# STOCKHOLM 1.0
#=GF ID P6
#=GF AC RF01683
#=GF DE Pseudomonas sRNA P6
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 44.3
#=GF TC 53.6
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 20.64 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 16870723
#=GF RT Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of
#=GF RT sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool
#=GF RT sRNAPredict2.
#=GF RA Livny J, Brencic A, Lory S, Waldor MK
#=GF RL Nucleic Acids Res. 2006;34:3484-3493.
#=GF WK Pseudomonas_sRNA
#=GF SQ 3

CP000744.1/4747485-4747994 UCGAAGGGGAUAGCAUCGAUUGGCAGGAGAAAUAGAACCUUGCCCAGGCCGCCGACGGAUAUGCGUGUU-CACCGGCUCUUGCGCAGGGACGCCUUCUCGUGGAAAGGGCGCCAGCUGGGGUGAGCGGCAUUCUAGCGACAGGCCGGAAGUGGUUAUUUCUUCAAUGCGACAACUAAUUAUAAAAGCACCGAAGAGGGCU
AF012537.1/624-115         UCGAAGGGGAUGGCAUCGAUUGGCAGGAGAAAUAGAACCUUGCCCAGGCUGCCGACGGAUAUGCGUGAUCCACCGGCUCUUGCGCAUGG-CGCCUUCUCGUGGACAGGGCGCCAGCUGGGGUGAGCGGCAUUCUAGCGACAGGCCGAAAGUGGUUAUUUCUUCAAUGCGACAACUAAUUAUAAAAGCACCGAAGAGGGCA
AE004091.2/972154-971645   UCGAAGGGGAUGGCAUCGAUUGGCAGGAGAAAUAGAACCUUGCCCAGGCUGCCGACGGAUAUGCGUGAU-CACCGGCUCUUGCGCAUGG-CGCCUUCUCGUGGACAGGGCGCCAGCUGGGGUGAGCGGCAUUCUAGCGACAGGCCGAAAGUGGUUAUUUCUUCAAUGCGACAACUAAUUAUAAAAGCACCGAAGAGGGCA
#=GC SS_cons               {{{{-{{{{{-{{{-{{{{,,<<<<<<-<________>>>>>>>,,{{{{{{,,,{{{--{{{{<<<__.>>>,,{{-{{{{{{{{{<<.<<<<<<-<<___>>->>>>>>>>,,,[[[[[[[[[-[[-------[[-[[,,<<<<<<-<<-----<<<<<<<--<<<_________________>>>-->>>>>>>>>-
#=GC RF                    cCGaAGgGGaUgGCAuCGaUUGGCagGAGAAAUAGAACCcuGCCCAGGCcGCCGACGGAUauGCGuGaU.CaCCGGCUCcuGCGCauGG.CGCCcuCuCGUGGaaagGGCGCCAGCuGGGGcGaGCGGCAUUCUAGCGaCAGGCCGaaAGcGGUUAccuCuuCAAuGCGACAACUAAUUAUAAAAGCaCCGaaGagggCa

CP000744.1/4747485-4747994 UUCGGCGAUAUUGACAGGCAGCUGCAUUUGUGCCCGGAAAGCGCGAAGUGUAAUCAAUGAGUAAAGCAAAUCUCAAGCCAUAAAUUGGUAAUUCCUUCUUCUUCAACGGUUUGGACGAGCCGACUCGCUUCGCCUGCUACCCCGUGUCGCACCCUCACGGUGCGUGGCGUUUCCUCUCGCCCCAAUUAUGCGCAGGCGCG
AF012537.1/624-115         UUCGGCGAUAUUGACAGGCAGCGACAUUUGUGCCCGGAAAGCGCGAAGUGUAAUCAAUGAGUAAAGCAAAUCUCAAGCCAUAAAUUGCCAAUUCCUUCUCCUUCAAUGGCUUGCCCGCUACGACUCGCCUCGACUGCUACCCCGUGUCGCACCUUGGCUGUGCGUGGCGUUUCCUCUCGCCCCAAUUAUGCGCAGGCGCG
AE004091.2/972154-971645   UUCGGCGAUAUUGACAGGCAGCGACAUUUGUGCCCGGAAAGCGCGAAGUGUAAUCAAUGAGUAAAGCAAAUCUCAAGCCAUAAAUUGCCAAUUCCUUCUCCUUCAAUGGCUUGCCCGCUACGACUCGCCUCGACUGCUACCCCGUGUCGCACCUUGGCUGUGCGUGGCGUUUCCUCUCGCCCCAAUUAUGCGCAGGCGCG
#=GC SS_cons               >>>>>>(((((-(---(((((((<<<<<<<<<<_______>>>>->>>>>>,,,,,,,<<<<--<<<------<<<<<<<<________________________>>>>>>>>--->>>--->>>>,,,,))-)))))---)-)))))<<<<_______>>>>]]-]]----]]-]]]]]]]]],,,}}}}}}}}}-}}}
#=GC RF                    uuCGGCGacacUGACAgGCaGCgaCacuuGcGCCCGGAAAGCgCGaaguGuAAUCAAUGaGuAAagCAAAUCUCaagCCguAAAUUGccAAUUCCUUCUcCUUCAacGGcuuGcaCGcuaCGaCuCGCcUcGaCuGCcACCCCguguCGCaCCuUggCuGuGCGuGGCGUUUCCUCuCgCCCCaAUUauGCGCagGCGCG

CP000744.1/4747485-4747994 CAUCACCGAAGUGUUACCGCCCACGCAUUCCC-GCGCGCGCCCAUUCGGCACGCCCUCCUCCUCGACCCGCGCCAAAUGAAAGACCCCGCGCAGCUCGCACCGCGCGGGGUC
AF012537.1/624-115         CAUCACCGAAGUGUUACCGCCGCCCCAUUCCCGGCGCGAGCCCAUUCGAAACGCCCUCCUCCUCGGCCCGCGCCAAAUGAAAGAC-CCGCGCGGCUCGCACCGCGCGGGGUC
AE004091.2/972154-971645   CAUCACCGAAGUGUUACCGCCGCCCCAUUCCCGGCGCGAGCCCAUUCGAAACGCCCUCCUCCUCGGCCCGCGCCAAAUGAAAGACCCCGCGCGGCUCGCACCGCGCGGGGUC
#=GC SS_cons               }}}--}}},,,,,,,,,,<<<<_________>>>>}}}-}}},,,}}}}---}}}-}}}}}-}}}}::::::::::::::::<<<<<<<<<<<<______>>>>>>>>>>>>
#=GC RF                    CauCACCGAAGUGUUACCGCcgaCcCAUUCCcgGCGCgaGCCCAUuCGaaACGCcCuCCcCCuCGgCCCGCGCCAAAUGAAAGaCcCCGCGCgGCUCGCACcGCGCGGgGuC
//
