# STOCKHOLM 1.0
#=GF ID P5
#=GF AC RF01680
#=GF DE Pseudomonas sRNA P5
#=GF AU Osuch I
#=GF GA 60.0
#=GF NC 38.5
#=GF TC 101.7
#=GF SE INFERNAL
#=GF SS Predicted; WAR; Mafta_alifold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 31.70 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 16870723
#=GF RT Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of
#=GF RT sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool
#=GF RT sRNAPredict2.
#=GF RA Livny J, Brencic A, Lory S, Waldor MK
#=GF RL Nucleic Acids Res. 2006;34:3484-3493.
#=GF RN [2]
#=GF RM 18405392
#=GF RT Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas
#=GF RT species.
#=GF RA Gonzalez N, Heeb S, Valverde C, Kay E, Reimmann C, Junier T, Haas D
#=GF RL BMC Genomics. 2008;9:167.
#=GF CC Identified as IgRs 491 in [2].
#=GF WK Pseudomonas_sRNA
#=GF SQ 2

AE004091.2/912791-912861   GGUCUGCUCUUCUUCUUCCCGGGCACACCAGCCGCAGCGAAAUUCGCGGCCGAGCUGUCUGUGCCGCUCGU
CP000744.1/4813718-4813648 GGUCUGCUCUUCUUGUUCCCGGGCACACCAGCCGCAGCGAAAGGGGCGGCCGAGCUGUCUGUGCCGCGCGU
#=GC SS_cons               <<<-<<<<<___________>>>>>->>>:<<<<<__________>>>>><<<<<-<<____>>->>>>>:
#=GC RF                    GGUCUGCuCUUCUUgUUCCCGgGCACACCAGCCGCAGCGAAAuugGCGGCCGaGCUGuCUGUgCCGCuCGU
//
