INFERNAL1/a [1.1.5 | Sep 2023] NAME P36 ACC RF01679 DESC Pseudomonas sRNA P36 STATES 192 NODES 46 CLEN 61 W 77 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 11 04:13:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01679/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.363281 CKSUM 1070952013 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.60 NC 35.90 EFP7GF -5.8821 0.72500 ECMLC 0.60150 -9.65640 0.85805 1600000 669690 0.001792 ECMGC 0.44207 -16.42030 -3.50359 1600000 120755 0.003312 ECMLI 0.55892 -8.73518 1.92633 1600000 464643 0.002583 ECMGI 0.50285 -11.16665 -0.52810 1600000 84211 0.004750 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 97 -6.695 -6.902 -0.064 -5.316 IL 1 1 2 1 4 1 15 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 13 77 97 -7.731 -0.024 -6.385 -1.194 1.436 -1.993 -0.722 D 4 2 3 5 3 0 11 76 96 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 13 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 12 76 96 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 7 5 3 8 3 0 10 75 95 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 12 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 11 75 95 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 10 8 3 11 3 0 10 74 94 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 12 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 2 1 10 74 94 -8.072 -0.005 -1.194 1.436 -1.993 -0.722 D 13 11 3 14 2 0 9 73 93 -8.445 -0.004 IL 14 14 3 14 2 1 11 75 95 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 5 ] - - - - - - B 15 14 3 16 102 0 9 73 93 [ BEGL 6 ] - - - - - - S 16 15 1 17 4 0 0 43 62 -0.049 -6.711 -6.119 -6.759 [ MATP 7 ] 5 32 C G - - MP 17 16 1 21 6 2 2 43 62 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 18 16 1 21 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 1 21 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 1 21 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 31 U A - - MP 23 22 6 27 6 2 2 41 60 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 24 22 6 27 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 26 22 6 27 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 27 27 5 27 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 28 28 6 28 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 30 G C - - MP 29 28 6 33 6 2 2 39 58 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 30 28 6 33 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 31 28 6 33 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 32 28 6 33 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 33 33 5 33 6 1 1 38 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 34 34 6 34 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 29 U A - - MP 35 34 6 39 6 2 2 37 56 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 36 34 6 39 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 37 34 6 39 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 38 34 6 39 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 39 39 5 39 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 40 40 6 40 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 28 U A - - MP 41 40 6 45 6 2 2 35 54 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 42 40 6 45 6 1 1 33 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 6 45 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 6 45 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 34 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 10 27 A U - - MP 47 46 6 51 6 2 2 33 52 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.436 -2.565 -3.476 3.036 -3.641 -4.679 0.638 -3.538 -3.387 1.466 -3.916 -0.106 0.218 -3.924 -1.306 -2.335 ML 48 46 6 51 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 32 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 11 26 C G - - MP 53 52 6 57 4 2 2 31 50 -6.695 -6.902 -0.064 -5.316 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 54 52 6 57 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 56 52 6 57 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 57 57 5 57 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 58 58 6 58 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - C - - - ML 59 58 6 61 5 1 1 28 47 -6.892 -0.045 -6.708 -6.920 -7.811 -1.194 1.436 -1.993 -0.722 D 60 58 6 61 5 0 0 27 45 -4.959 -0.803 -4.221 -2.596 -2.508 IL 61 61 3 61 5 1 1 28 47 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 25 G C - - MP 62 61 3 66 6 2 2 27 46 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 63 61 3 66 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 3 66 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 3 66 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 24 C G - - MP 68 67 6 72 6 2 2 25 44 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 69 67 6 72 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 23 G C - - MP 74 73 6 78 6 2 2 23 42 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 75 73 6 78 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 22 G C - - MP 80 79 6 84 4 2 2 21 40 -6.695 -6.902 -0.064 -5.316 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 81 79 6 84 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 83 79 6 84 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 86 85 6 88 3 1 1 18 36 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 87 85 6 88 3 0 0 17 36 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - C - - - ML 89 88 3 91 3 1 1 16 35 -7.731 -0.024 -6.385 -1.194 1.436 -1.993 -0.722 D 90 88 3 91 3 0 0 16 34 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - G - - - ML 92 91 3 94 3 1 1 15 33 -7.731 -0.024 -6.385 -1.084 -2.219 1.577 -1.603 D 93 91 3 94 3 0 0 15 33 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - U - - - ML 95 94 3 97 3 1 1 13 32 -7.731 -0.024 -6.385 -1.069 -1.142 -1.777 1.474 D 96 94 3 97 3 0 0 13 32 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - a - - - ML 98 97 3 100 2 1 1 1 1 * 0.000 0.658 -1.204 0.415 -0.609 D 99 97 3 100 2 0 0 0 0 * 0.000 IL 100 100 3 100 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 24 ] - - - - - - E 101 100 3 -1 0 0 0 0 0 [ BEGR 25 ] - - - - - - S 102 15 1 103 3 0 0 44 63 -7.731 -0.024 -6.385 IL 103 103 2 103 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 33 - A - - - ML 104 103 2 106 3 1 1 44 63 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 105 103 2 106 3 0 0 43 62 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 34 - A - - - ML 107 106 3 109 3 1 1 43 62 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 108 106 3 109 3 0 0 41 61 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 35 - A - - - ML 110 109 3 112 3 1 1 42 61 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 111 109 3 112 3 0 0 40 60 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 36 - C - - - ML 113 112 3 115 5 1 1 41 60 -6.892 -0.045 -6.708 -6.920 -7.811 -1.194 1.436 -1.993 -0.722 D 114 112 3 115 5 0 0 39 58 -4.959 -0.803 -4.221 -2.596 -2.508 IL 115 115 3 115 5 1 1 41 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 37 61 C G - - MP 116 115 3 120 6 2 2 40 59 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 117 115 3 120 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 3 120 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 3 120 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 38 60 G C - - MP 122 121 6 126 6 2 2 38 57 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 123 121 6 126 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 39 59 G C - - MP 128 127 6 132 6 2 2 36 55 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 129 127 6 132 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 40 58 G C - - MP 134 133 6 138 6 2 2 34 53 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 135 133 6 138 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 41 57 U A - - MP 140 139 6 144 6 2 2 32 51 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 141 139 6 144 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 42 56 U A - - MP 146 145 6 150 6 2 2 30 49 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.740 -3.544 -3.625 0.125 -2.670 -4.228 1.645 -3.331 -3.635 0.461 -4.030 -1.455 3.057 -3.905 -0.358 -2.500 ML 147 145 6 150 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 29 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 43 55 C G - - MP 152 151 6 156 4 2 2 28 47 -6.695 -6.902 -0.064 -5.316 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 153 151 6 156 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 156 156 5 156 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 44 - A - - - ML 158 157 6 160 5 1 1 25 44 -6.892 -0.045 -6.708 -6.920 -7.811 1.596 -1.908 -1.587 -1.409 D 159 157 6 160 5 0 0 24 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 160 160 3 160 5 1 1 25 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 45 54 u g - - MP 161 160 3 165 6 2 2 24 43 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -3.636 -3.535 -3.440 0.084 -2.352 -3.943 1.921 -3.076 -3.477 0.360 -3.817 -1.550 1.142 -3.762 2.645 -2.372 ML 162 160 3 165 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 3 165 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 3 165 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 46 53 C G - - MP 167 166 6 171 6 2 2 22 41 -9.016 -8.955 -0.022 -7.732 -8.012 -8.407 -4.092 -3.952 -3.856 -0.232 -2.684 -4.326 3.379 -3.446 -3.893 0.088 -4.200 -1.895 0.871 -4.189 -0.383 -2.750 ML 168 166 6 171 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 47 52 G C - - MP 173 172 6 177 4 2 2 20 39 -6.695 -6.902 -0.064 -5.316 -4.291 -2.882 -4.359 0.491 -4.597 -4.509 -0.070 -4.562 -4.018 3.508 -4.390 -0.569 -0.470 -4.168 -2.086 -3.244 ML 174 172 6 177 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 48 - G - - - ML 179 178 6 181 3 1 1 16 35 -7.731 -0.024 -6.385 -1.084 -2.219 1.577 -1.603 D 180 178 6 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - U - - - ML 182 181 3 184 3 1 1 15 33 -7.731 -0.024 -6.385 -1.069 -1.142 -1.777 1.474 D 183 181 3 184 3 0 0 15 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 50 - A - - - ML 185 184 3 187 3 1 1 13 32 -7.731 -0.024 -6.385 1.596 -1.908 -1.587 -1.409 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 51 - A - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 1.596 -1.908 -1.587 -1.409 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME P36 ACC RF01679 DESC Pseudomonas sRNA P36 LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 11 04:13:34 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01679/CM NSEQ 2 EFFN 1.636719 CKSUM 1070952013 STATS LOCAL MSV -8.0274 0.72500 STATS LOCAL VITERBI -9.1830 0.72500 STATS LOCAL FORWARD -3.3169 0.72500 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41015 1.25267 1.26559 1.67088 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.40084 0.31888 2.96435 2.03410 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23314 2.86904 2.63013 2.53664 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23314 2.86904 2.63013 2.53664 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.40084 0.31888 2.96435 2.03410 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.84142 0.34851 2.56032 1.84112 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.59614 1.63257 2.29497 0.46323 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.35315 2.85200 0.24025 2.80063 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.59334 1.63259 2.29398 0.46372 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.59248 1.63259 2.29368 0.46387 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.52843 2.35437 1.53494 2.30211 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.83142 0.35013 2.55626 1.83961 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.40084 0.31888 2.96435 2.03410 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.35003 2.84898 0.24119 2.79622 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.83135 0.35014 2.55623 1.83960 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.35099 2.84991 0.24090 2.79758 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.35090 2.84982 0.24093 2.79745 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23314 2.86904 2.63013 2.53664 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.40084 0.31888 2.96435 2.03410 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.31012 3.12764 0.23594 2.70159 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.26993 2.29356 2.77025 0.31044 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.91324 2.28591 1.06752 1.87577 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 3.01070 0.28224 2.67794 2.05614 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 3.00816 0.28258 2.67694 2.05565 23 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.10951 2.71834 0.30494 2.58298 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.99216 0.28476 2.67059 2.05249 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.11272 2.72201 0.30358 2.58787 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53253 1.78807 2.16991 0.44774 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.52862 2.46983 1.46919 2.34477 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.52865 2.46973 1.46919 2.34464 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 3.01198 0.28207 2.67845 2.05640 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.52912 2.46843 1.46924 2.34281 31 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.10844 2.71712 0.30539 2.58135 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23314 2.86904 2.63013 2.53664 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23314 2.86904 2.63013 2.53664 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23314 2.86904 2.63013 2.53664 35 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.40084 0.31888 2.96435 2.03410 36 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.83396 0.34972 2.55729 1.84000 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.35241 2.85128 0.24048 2.79958 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.35220 2.85108 0.24054 2.79928 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.35184 2.85073 0.24065 2.79878 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.59215 1.63259 2.29356 0.46392 41 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.59165 1.63260 2.29338 0.46401 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.83129 0.35015 2.55620 1.83959 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23314 2.86904 2.63013 2.53664 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.60056 1.41005 2.34344 0.53505 45 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.83135 0.35014 2.55623 1.83960 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.35099 2.84991 0.24090 2.79758 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.31012 3.12764 0.23594 2.70159 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.26993 2.29356 2.77025 0.31044 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.23314 2.86904 2.63013 2.53664 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.23314 2.86904 2.63013 2.53664 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 3.00815 0.28258 2.67693 2.05565 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.10951 2.71834 0.30494 2.58297 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 1.89645 2.50937 0.39625 2.34612 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.11277 2.72208 0.30356 2.58796 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.52860 2.46987 1.46919 2.34484 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.52856 2.47000 1.46918 2.34502 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 3.01507 0.28166 2.67966 2.05700 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.01465 0.28171 2.67950 2.05692 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.01282 0.28196 2.67878 2.05656 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.11114 2.72021 0.30425 2.58547 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //