INFERNAL1/a [1.1.4 | Dec 2020] NAME P37 ACC RF01678 DESC Pseudomonas sRNA P37 STATES 195 NODES 45 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:35:06 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.542969 CKSUM 47760244 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 91.10 NC 43.80 EFP7GF -4.7109 0.72593 ECMLC 0.57010 -9.44470 1.45435 1600000 599396 0.002002 ECMGC 0.49352 -14.76620 -2.14137 1600000 203230 0.001968 ECMLI 0.55968 -8.01957 2.69708 1600000 483075 0.002484 ECMGI 0.51130 -10.56996 0.47872 1600000 113620 0.003521 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 77 97 -6.711 -7.956 -0.090 -4.410 IL 1 1 2 1 4 1 7 79 98 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 62 - U - - MR 3 2 3 5 2 1 6 77 97 -8.169 -0.005 -1.205 -1.252 -1.923 1.527 D 4 2 3 5 2 0 5 77 96 -4.432 -0.068 IR 5 5 3 5 2 1 7 78 98 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 2 ] - - - - - - B 6 5 3 7 48 0 5 76 96 [ BEGL 3 ] - - - - - - S 7 6 1 8 4 0 0 27 46 -0.047 -6.751 -6.159 -6.799 [ MATP 4 ] 1 13 C G - - MP 8 7 1 12 6 2 2 27 46 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 9 7 1 12 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 10 7 1 12 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 11 7 1 12 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 12 12 5 12 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 13 13 6 13 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 12 G C - - MP 14 13 6 18 6 2 2 25 44 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 15 13 6 18 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 6 18 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 6 18 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 11 A U - - MP 20 19 6 24 6 2 2 23 42 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 21 19 6 24 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 6 24 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 10 C G - - MP 26 25 6 30 4 2 2 21 40 -6.780 -6.987 -0.060 -5.401 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 27 25 6 30 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 29 25 6 30 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 30 30 5 30 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 5 - C - - - ML 32 31 6 34 3 1 1 18 36 -7.809 -0.023 -6.463 -1.372 1.507 -2.181 -0.862 D 33 31 6 34 3 0 0 17 36 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 6 - U - - - ML 35 34 3 37 3 1 1 16 35 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 36 34 3 37 3 0 0 16 34 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 7 - G - - - ML 38 37 3 40 3 1 1 15 33 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 39 37 3 40 3 0 0 15 33 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - u - - - ML 41 40 3 43 3 1 1 13 32 -7.809 -0.023 -6.463 -0.585 0.401 -1.347 0.695 D 42 40 3 43 3 0 0 13 32 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - C - - - ML 44 43 3 46 2 1 1 1 1 * 0.000 -1.372 1.507 -2.181 -0.862 D 45 43 3 46 2 0 0 0 0 * 0.000 IL 46 46 3 46 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 13 ] - - - - - - E 47 46 3 -1 0 0 0 0 0 [ BEGR 14 ] - - - - - - S 48 6 1 49 3 0 0 62 82 -7.809 -0.023 -6.463 IL 49 49 2 49 3 1 1 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - C - - - ML 50 49 2 52 3 1 1 62 81 -7.809 -0.023 -6.463 -1.372 1.507 -2.181 -0.862 D 51 49 2 52 3 0 0 61 80 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - C - - - ML 53 52 3 55 3 1 1 61 80 -7.809 -0.023 -6.463 -1.372 1.507 -2.181 -0.862 D 54 52 3 55 3 0 0 60 79 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - U - - - ML 56 55 3 58 3 1 1 60 79 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 57 55 3 58 3 0 0 59 78 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - C - - - ML 59 58 3 61 3 1 1 59 78 -7.809 -0.023 -6.463 -1.372 1.507 -2.181 -0.862 D 60 58 3 61 3 0 0 58 77 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 62 61 3 64 3 1 1 58 77 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 63 61 3 64 3 0 0 57 76 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - U - - - ML 65 64 3 67 5 1 1 57 76 -6.959 -0.043 -6.775 -6.987 -7.878 -1.205 -1.252 -1.923 1.527 D 66 64 3 67 5 0 0 56 74 -4.959 -0.803 -4.221 -2.596 -2.508 IL 67 67 3 67 5 1 1 57 76 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 61 G C - - MP 68 67 3 72 6 2 2 56 75 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 69 67 3 72 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 3 72 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 3 72 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 56 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 60 A U - - MP 74 73 6 78 6 2 2 54 73 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 75 73 6 78 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 54 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 22 59 C G - - MP 80 79 6 84 6 2 2 52 71 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 81 79 6 84 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 52 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 23 58 G C - - MP 86 85 6 90 6 2 2 50 69 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 87 85 6 90 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 50 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 24 57 A U - - MP 92 91 6 96 6 2 2 48 67 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 93 91 6 96 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 95 91 6 96 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 96 96 5 96 6 1 1 48 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 97 97 6 97 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 25 56 A U - - MP 98 97 6 102 6 2 2 46 65 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 99 97 6 102 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 100 97 6 102 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 101 97 6 102 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 102 102 5 102 6 1 1 46 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 103 103 6 103 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 26 55 A U - - MP 104 103 6 108 6 2 2 44 63 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.546 -2.644 -3.581 3.145 -3.799 -4.842 0.486 -3.637 -3.485 1.344 -4.020 -0.163 0.067 -4.070 -1.457 -2.431 ML 105 103 6 108 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 6 108 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 6 108 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 44 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 27 54 C G - - MP 110 109 6 114 6 2 2 42 61 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 111 109 6 114 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 42 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 28 53 u g - - MP 116 115 6 120 6 2 2 40 59 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.782 -3.689 -3.554 -0.055 -2.413 -4.031 1.864 -3.155 -3.592 0.193 -3.917 -1.699 1.062 -3.895 2.779 -2.479 ML 117 115 6 120 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 40 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 29 52 C G - - MP 122 121 6 126 6 2 2 38 57 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 123 121 6 126 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 38 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 30 51 g c - - MP 128 127 6 132 6 2 2 36 55 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.535 -2.440 -3.596 1.071 -4.095 -4.372 0.311 -3.870 -3.518 2.921 -3.966 1.495 0.018 -3.706 -1.639 -2.485 ML 129 127 6 132 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 31 50 C G - - MP 134 133 6 138 6 2 2 34 53 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 135 133 6 138 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 32 49 u g - - MP 140 139 6 144 6 2 2 32 51 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.782 -3.689 -3.554 -0.055 -2.413 -4.031 1.864 -3.155 -3.592 0.193 -3.917 -1.699 1.062 -3.895 2.779 -2.479 ML 141 139 6 144 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 33 48 a u - - MP 146 145 6 150 6 2 2 30 49 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -2.808 1.198 -2.945 2.163 -3.207 -3.915 0.727 -3.182 -2.895 1.799 -3.406 0.098 0.466 -3.179 -1.057 -1.928 ML 147 145 6 150 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 34 47 G C - - MP 152 151 6 156 6 2 2 28 47 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.442 -2.953 -4.519 0.395 -4.811 -4.573 -0.248 -4.736 -4.125 3.557 -4.485 -0.642 -0.643 -4.270 -2.270 -3.401 ML 153 151 6 156 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 35 46 U A - - MP 158 157 6 162 6 2 2 26 45 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 159 157 6 162 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 36 45 C G - - MP 164 163 6 168 6 2 2 24 42 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -4.241 -4.117 -3.981 -0.380 -2.771 -4.433 3.443 -3.550 -4.022 -0.090 -4.314 -2.061 0.772 -4.329 -0.472 -2.873 ML 165 163 6 168 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 37 44 g u - - MP 170 169 6 174 6 2 2 22 40 -9.046 -8.985 -0.022 -7.762 -8.041 -8.436 -3.425 -2.272 -3.574 1.244 -4.133 -4.865 0.222 -3.626 -3.292 1.615 -3.804 2.848 -0.139 -4.108 -1.718 -2.319 ML 171 169 6 174 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 38 43 U A - - MP 176 175 6 180 4 2 2 20 38 -6.780 -6.987 -0.060 -5.401 -3.879 -3.692 -3.750 -0.011 -2.762 -4.342 1.558 -3.435 -3.759 0.295 -4.147 -1.600 3.155 -4.041 -0.446 -2.612 ML 177 175 6 180 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 179 175 6 180 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 180 180 5 180 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 181 181 6 181 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - U - - - ML 182 181 6 184 3 1 1 16 35 -7.809 -0.023 -6.463 -1.205 -1.252 -1.923 1.527 D 183 181 6 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - A - - - ML 185 184 3 187 3 1 1 15 33 -7.809 -0.023 -6.463 1.643 -2.061 -1.725 -1.575 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - G - - - ML 188 187 3 190 3 1 1 13 32 -7.809 -0.023 -6.463 -1.249 -2.414 1.634 -1.799 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - C - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -1.372 1.507 -2.181 -0.862 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME P37 ACC RF01678 DESC Pseudomonas sRNA P37 LENG 62 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:35:06 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 2 EFFN 1.792969 CKSUM 47760244 STATS LOCAL MSV -8.0155 0.72593 STATS LOCAL VITERBI -9.2047 0.72593 STATS LOCAL FORWARD -2.9811 0.72593 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.75450 1.24820 1.28495 1.33438 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.92550 0.31914 2.65702 1.90094 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.40902 2.94761 0.22028 2.89428 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.47784 2.44724 1.60001 2.39199 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.91739 0.32033 2.65358 1.89966 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.50473 0.28562 3.07268 2.11647 5 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.34885 2.35825 2.85379 0.28461 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.40357 3.23680 0.21049 2.81130 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.84627 1.08003 2.38186 0.89108 8 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.50473 0.28562 3.07268 2.11647 9 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.17322 2.81866 0.27793 2.67139 10 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.61881 1.86215 2.26052 0.40425 11 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 3.09591 0.26037 2.77156 2.10836 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.16867 2.81318 0.27970 2.66430 13 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.50473 0.28562 3.07268 2.11647 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.50473 0.28562 3.07268 2.11647 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.34885 2.35825 2.85379 0.28461 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.50473 0.28562 3.07268 2.11647 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.34885 2.35825 2.85379 0.28461 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.34885 2.35825 2.85379 0.28461 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.40678 2.94531 0.22091 2.89097 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.47800 2.44683 1.59998 2.39135 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.91695 0.32040 2.65340 1.89959 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.40621 2.94472 0.22107 2.89013 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.47819 2.44633 1.59994 2.39056 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.47826 2.44616 1.59993 2.39028 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.47832 2.44600 1.59992 2.39004 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.91354 0.32090 2.65194 1.89905 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.67960 1.44643 2.43437 0.49701 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.91271 0.32103 2.65159 1.89892 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.90058 2.50619 0.39133 2.37746 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.91214 0.32111 2.65135 1.89883 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.67873 1.44647 2.43401 0.49714 32 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.73317 2.20411 1.27009 2.05212 33 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.40381 2.94227 0.22175 2.88660 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.67112 1.68951 2.38673 0.42421 35 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.91139 0.32122 2.65103 1.89871 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.80018 2.60683 0.38765 2.49722 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.67094 1.68951 2.38666 0.42424 38 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.34885 2.35825 2.85379 0.28461 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.21141 2.95638 2.70868 2.63211 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.40357 3.23680 0.21049 2.81130 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.50473 0.28562 3.07268 2.11647 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.48257 2.56480 1.52626 2.42447 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.71264 1.67317 2.41141 0.42114 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.17204 2.81724 0.27839 2.66955 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.48255 2.56488 1.52626 2.42459 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 3.09831 0.26008 2.77254 2.10883 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.27388 0.97405 2.00782 0.95384 48 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.94956 2.60626 0.36281 2.42890 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.17237 2.81764 0.27826 2.67006 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.60497 0.69749 2.31861 1.10911 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.17261 2.81792 0.27817 2.67043 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.94990 2.60668 0.36263 2.42944 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.17293 2.81831 0.27805 2.67093 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.61957 1.86220 2.26077 0.40412 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.61991 1.86222 2.26088 0.40406 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.62018 1.86224 2.26096 0.40401 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 3.10282 0.25953 2.77437 2.10971 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.17327 2.81872 0.27791 2.67146 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.61851 1.86213 2.26043 0.40430 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.09394 0.26061 2.77075 2.10798 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.34885 2.35825 2.85379 0.28461 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //