INFERNAL1/a [1.1.5 | Sep 2023] NAME P35 ACC RF01677 DESC Pseudomonas sRNA P35 STATES 195 NODES 45 CLEN 62 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 6 01:10:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01677/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.308594 CKSUM 3975236515 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 96.40 NC 48.30 EFP7GF -5.1746 0.72425 ECMLC 0.51061 -10.09817 2.12163 1600000 615170 0.001951 ECMGC 0.41280 -16.46490 -2.21095 1600000 143700 0.002784 ECMLI 0.47555 -9.17356 3.56982 1600000 514128 0.002334 ECMGI 0.43929 -11.69548 0.79757 1600000 96715 0.004136 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 3 0 1 78 97 -4.779 -15.249 -0.054 IL 1 1 2 1 3 1 13 101 144 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 2 2 3 2 2 1 12 80 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 1 ] - - - - - - B 3 2 3 4 51 0 11 78 97 [ BEGL 2 ] - - - - - - S 4 3 1 5 4 0 0 29 48 -0.049 -6.699 -6.106 -6.746 [ MATP 3 ] 1 15 G C - - MP 5 4 1 9 6 2 2 29 48 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.243 -2.860 -4.310 0.520 -4.531 -4.488 -0.014 -4.507 -3.983 3.491 -4.359 -0.546 -0.416 -4.136 -2.028 -3.195 ML 6 4 1 9 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 7 4 1 9 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 8 4 1 9 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 9 9 5 9 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 10 10 6 10 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 14 C G - - MP 11 10 6 15 4 2 2 27 46 -6.609 -7.855 -0.097 -4.308 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 12 10 6 15 4 1 1 27 45 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 13 10 6 15 4 1 1 26 45 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 14 10 6 15 4 0 0 24 43 -12.737 -14.007 -2.036 -0.404 IL 15 15 5 15 4 1 1 27 45 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 16 16 6 16 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 13 - A - - MR 17 16 6 19 5 1 1 25 44 -6.871 -0.046 -6.686 -6.899 -7.790 1.581 -1.861 -1.544 -1.357 D 18 16 6 19 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 19 19 3 19 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 12 C G - - MP 20 19 3 24 6 2 2 24 43 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 21 19 3 24 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 3 24 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 3 24 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 11 G C - - MP 26 25 6 30 4 2 2 22 41 -6.668 -6.875 -0.065 -5.289 -4.243 -2.860 -4.310 0.520 -4.531 -4.488 -0.014 -4.507 -3.983 3.491 -4.359 -0.546 -0.416 -4.136 -2.028 -3.195 ML 27 25 6 30 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 29 25 6 30 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 30 30 5 30 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 5 - G - - - ML 32 31 6 34 3 1 1 19 38 -7.706 -0.025 -6.361 -1.033 -2.157 1.558 -1.542 D 33 31 6 34 3 0 0 18 37 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 6 - u - - - ML 35 34 3 37 3 1 1 18 36 -7.706 -0.025 -6.361 -0.507 0.359 -1.259 0.674 D 36 34 3 37 3 0 0 17 36 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 7 - G - - - ML 38 37 3 40 3 1 1 16 35 -7.706 -0.025 -6.361 -1.033 -2.157 1.558 -1.542 D 39 37 3 40 3 0 0 16 34 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 8 - G - - - ML 41 40 3 43 3 1 1 15 33 -7.706 -0.025 -6.361 -1.033 -2.157 1.558 -1.542 D 42 40 3 43 3 0 0 15 33 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - A - - - ML 44 43 3 46 3 1 1 13 32 -7.706 -0.025 -6.361 1.581 -1.861 -1.544 -1.357 D 45 43 3 46 3 0 0 13 32 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - A - - - ML 47 46 3 49 2 1 1 1 1 * 0.000 1.581 -1.861 -1.544 -1.357 D 48 46 3 49 2 0 0 0 0 * 0.000 IL 49 49 3 49 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 14 ] - - - - - - E 50 49 3 -1 0 0 0 0 0 [ BEGR 15 ] - - - - - - S 51 3 1 52 5 0 0 62 81 -6.871 -0.046 -6.686 -6.899 -7.790 IL 52 52 2 52 5 1 1 63 82 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 16 62 g u - - MP 53 52 2 57 6 2 2 62 81 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -3.307 -2.213 -3.444 1.303 -3.904 -4.650 0.425 -3.514 -3.201 1.772 -3.709 2.658 0.063 -3.910 -1.513 -2.219 ML 54 52 2 57 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 2 57 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 2 57 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 17 61 G C - - MP 59 58 6 63 6 2 2 60 79 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.243 -2.860 -4.310 0.520 -4.531 -4.488 -0.014 -4.507 -3.983 3.491 -4.359 -0.546 -0.416 -4.136 -2.028 -3.195 ML 60 58 6 63 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 18 60 C G - - MP 65 64 6 69 6 2 2 58 77 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 66 64 6 69 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 58 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 19 59 C G - - MP 71 70 6 75 6 2 2 56 75 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 72 70 6 75 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 20 58 C G - - MP 77 76 6 81 6 2 2 54 73 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 78 76 6 81 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 21 57 U A - - MP 83 82 6 87 6 2 2 52 71 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -3.699 -3.499 -3.588 0.165 -2.643 -4.194 1.671 -3.301 -3.599 0.511 -3.995 -1.412 3.025 -3.865 -0.332 -2.466 ML 84 82 6 87 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 22 56 C G - - MP 89 88 6 93 6 2 2 50 69 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 90 88 6 93 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 23 55 C G - - MP 95 94 6 99 6 2 2 48 67 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 96 94 6 99 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 54 G C - - MP 101 100 6 105 6 2 2 46 65 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.243 -2.860 -4.310 0.520 -4.531 -4.488 -0.014 -4.507 -3.983 3.491 -4.359 -0.546 -0.416 -4.136 -2.028 -3.195 ML 102 100 6 105 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 53 u g - - MP 107 106 6 111 6 2 2 44 63 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -3.592 -3.488 -3.406 0.126 -2.333 -3.916 1.937 -3.053 -3.442 0.411 -3.787 -1.504 1.166 -3.721 2.600 -2.340 ML 108 106 6 111 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 26 52 C G - - MP 113 112 6 117 6 2 2 42 61 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 114 112 6 117 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 27 51 U A - - MP 119 118 6 123 6 2 2 40 59 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -3.699 -3.499 -3.588 0.165 -2.643 -4.194 1.671 -3.301 -3.599 0.511 -3.995 -1.412 3.025 -3.865 -0.332 -2.466 ML 120 118 6 123 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 28 50 G C - - MP 125 124 6 129 6 2 2 38 57 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.243 -2.860 -4.310 0.520 -4.531 -4.488 -0.014 -4.507 -3.983 3.491 -4.359 -0.546 -0.416 -4.136 -2.028 -3.195 ML 126 124 6 129 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 36 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 29 49 C G - - MP 131 130 6 135 6 2 2 36 55 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 132 130 6 135 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 30 48 G C - - MP 137 136 6 141 4 2 2 34 53 -6.668 -6.875 -0.065 -5.289 -4.243 -2.860 -4.310 0.520 -4.531 -4.488 -0.014 -4.507 -3.983 3.491 -4.359 -0.546 -0.416 -4.136 -2.028 -3.195 ML 138 136 6 141 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 141 141 5 141 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 143 142 6 145 3 1 1 31 50 -7.706 -0.025 -6.361 -1.140 1.411 -1.935 -0.679 D 144 142 6 145 3 0 0 30 49 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 146 145 3 148 3 1 1 30 49 -8.115 -0.022 -6.433 -1.033 -2.157 1.558 -1.542 D 147 145 3 148 3 0 0 29 48 -5.620 -0.734 -1.403 IL 148 148 3 148 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 47 - U - - MR 149 148 3 151 3 1 1 29 48 -8.115 -0.022 -6.433 -1.027 -1.108 -1.732 1.456 D 150 148 3 151 3 0 0 27 46 -6.390 -1.568 -0.620 IR 151 151 3 151 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 46 - U - - MR 152 151 3 154 5 1 1 28 47 -6.871 -0.046 -6.686 -6.899 -7.790 -1.027 -1.108 -1.732 1.456 D 153 151 3 154 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 154 154 3 154 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 45 u g - - MP 155 154 3 159 6 2 2 27 46 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -3.592 -3.488 -3.406 0.126 -2.333 -3.916 1.937 -3.053 -3.442 0.411 -3.787 -1.504 1.166 -3.721 2.600 -2.340 ML 156 154 3 159 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 3 159 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 3 159 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 44 C G - - MP 161 160 6 165 6 2 2 25 44 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 162 160 6 165 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 35 43 C G - - MP 167 166 6 171 6 2 2 23 42 -9.007 -8.946 -0.023 -7.723 -8.003 -8.398 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 168 166 6 171 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 36 42 C G - - MP 173 172 6 177 4 2 2 21 40 -6.668 -6.875 -0.065 -5.289 -4.047 -3.901 -3.817 -0.187 -2.658 -4.293 3.358 -3.415 -3.854 0.143 -4.164 -1.844 0.901 -4.146 -0.356 -2.713 ML 174 172 6 177 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 6 177 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - U - - - ML 179 178 6 181 3 1 1 18 36 -7.706 -0.025 -6.361 -1.027 -1.108 -1.732 1.456 D 180 178 6 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - U - - - ML 182 181 3 184 3 1 1 16 35 -7.706 -0.025 -6.361 -1.027 -1.108 -1.732 1.456 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - C - - - ML 185 184 3 187 3 1 1 15 33 -7.706 -0.025 -6.361 -1.140 1.411 -1.935 -0.679 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - C - - - ML 188 187 3 190 3 1 1 13 32 -7.706 -0.025 -6.361 -1.140 1.411 -1.935 -0.679 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 41 - U - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -1.027 -1.108 -1.732 1.456 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME P35 ACC RF01677 DESC Pseudomonas sRNA P35 LENG 62 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 6 01:10:33 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01677/CM NSEQ 2 EFFN 1.652344 CKSUM 3975236515 STATS LOCAL MSV -7.8182 0.72425 STATS LOCAL VITERBI -9.0676 0.72425 STATS LOCAL FORWARD -3.0737 0.72425 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.88888 1.20076 1.07049 1.58497 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.36172 2.86460 0.23725 2.81433 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.84639 0.34597 2.56868 1.84656 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81645 0.35085 2.55636 1.84196 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.35023 2.85341 0.24070 2.79801 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.31963 3.13879 0.23319 2.71280 5 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.81568 1.09550 2.34728 0.89827 6 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.31963 3.13879 0.23319 2.71280 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.31963 3.13879 0.23319 2.71280 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23082 2.87791 2.63811 2.54632 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23082 2.87791 2.63811 2.54632 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 3.02391 0.27932 2.68929 2.06231 11 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.11948 2.73264 0.30058 2.59738 12 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23082 2.87791 2.63811 2.54632 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.11708 2.72987 0.30158 2.59371 14 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 3.00819 0.28142 2.68305 2.05923 15 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 1.77362 2.53109 0.41175 2.42789 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.36043 2.86334 0.23764 2.81249 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.84590 0.34605 2.56848 1.84648 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.84444 0.34629 2.56788 1.84626 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.84314 0.34650 2.56735 1.84606 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.60110 1.63818 2.30326 0.45959 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.84108 0.34683 2.56651 1.84575 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.84030 0.34695 2.56619 1.84563 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.35629 2.85932 0.23888 2.80661 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.60917 1.41361 2.35288 0.53095 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.83867 0.34722 2.56552 1.84538 26 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.59835 1.63819 2.30228 0.46007 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.35542 2.85846 0.23914 2.80537 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.83776 0.34736 2.56515 1.84524 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.35518 2.85823 0.23921 2.80503 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.41133 0.31532 2.97533 2.04241 31 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.31963 3.13879 0.23319 2.71280 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.60615 1.41380 2.35171 0.53144 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.83922 0.34713 2.56575 1.84547 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.84064 0.34690 2.56633 1.84568 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.84085 0.34686 2.56641 1.84571 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.27791 2.30009 2.77872 0.30770 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.27791 2.30009 2.77872 0.30770 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.41133 0.31532 2.97533 2.04241 39 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.41133 0.31532 2.97533 2.04241 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.27791 2.30009 2.77872 0.30770 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.12004 2.73329 0.30034 2.59825 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.12058 2.73391 0.30012 2.59908 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.12123 2.73466 0.29985 2.60008 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 1.90812 2.52668 0.38904 2.36438 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.27791 2.30009 2.77872 0.30770 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.27791 2.30009 2.77872 0.30770 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 3.01988 0.27985 2.68769 2.06152 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.11806 2.73100 0.30117 2.59522 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 3.02055 0.27976 2.68796 2.06165 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.52394 2.47895 1.47481 2.35217 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.11847 2.73148 0.30100 2.59584 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.90580 2.52392 0.39038 2.36074 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.02304 0.27943 2.68894 2.06214 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.11922 2.73234 0.30069 2.59699 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.11958 2.73276 0.30053 2.59755 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.52347 2.48026 1.47477 2.35402 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.12060 2.73393 0.30011 2.59910 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.12130 2.73473 0.29982 2.60017 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.12218 2.73576 0.29945 2.60153 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.03785 0.27749 2.69476 2.06501 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.65488 1.60995 2.33889 0.45671 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //