INFERNAL1/a [1.1.5 | Sep 2023] NAME rox1 ACC RF01667 DESC Drosophila rox1 ncRNA STATES 181 NODES 38 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 18:36:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01667/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.772461 CKSUM 2073611753 NULL 0.000 0.000 0.000 0.000 GA 58.00 TC 59.20 NC 57.60 EFP7GF -8.6306 0.71935 ECMLC 0.65730 -5.09727 3.69143 1600000 387274 0.003099 ECMGC 0.47795 -14.03260 -1.10025 1600000 193395 0.002068 ECMLI 0.63834 -4.12484 4.60242 1600000 315230 0.003807 ECMGI 0.53172 -9.40341 1.58632 1600000 137987 0.002899 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 74 94 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 IL 1 1 2 1 6 1 3 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 3 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 59 U A - - MP 3 2 3 7 6 2 6 74 94 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.065 -3.886 -3.917 -0.190 -2.886 -4.493 1.439 -3.573 -3.923 0.083 -4.303 -1.789 3.265 -4.221 -0.566 -2.760 ML 4 2 3 7 6 1 2 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 2 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 71 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 3 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 3 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 58 U A - - MP 9 8 6 13 6 2 5 72 92 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.065 -3.886 -3.917 -0.190 -2.886 -4.493 1.439 -3.573 -3.923 0.083 -4.303 -1.789 3.265 -4.221 -0.566 -2.760 ML 10 8 6 13 6 1 2 72 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 2 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 2 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 2 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 57 C G - - MP 15 14 6 19 4 2 3 70 90 -6.882 -7.089 -0.056 -5.503 -4.429 -4.324 -4.139 -0.567 -2.884 -4.567 3.512 -3.682 -4.185 -0.309 -4.458 -2.270 0.642 -4.506 -0.588 -3.029 ML 16 14 6 19 4 1 1 71 90 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 4 1 1 70 90 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 0 69 89 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 2 72 92 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 1 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 21 20 6 23 3 1 2 68 87 -8.298 -0.019 -6.616 -1.450 -2.649 1.692 -2.036 D 22 20 6 23 3 0 0 67 86 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 1 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - G - - MR 24 23 3 26 5 1 1 67 86 -7.040 -0.041 -6.856 -7.068 -7.960 -1.450 -2.649 1.692 -2.036 D 25 23 3 26 5 0 0 66 85 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 55 u g - - MP 27 26 3 31 6 2 3 66 85 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.968 -3.884 -3.698 -0.231 -2.495 -4.144 1.789 -3.256 -3.738 -0.016 -4.043 -1.889 0.957 -4.065 2.923 -2.615 ML 28 26 3 31 6 1 1 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 0 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 54 g u - - MP 33 32 6 37 6 2 2 64 83 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.540 -2.339 -3.701 1.179 -4.354 -5.080 0.025 -3.734 -3.384 1.460 -3.901 2.999 -0.335 -4.303 -1.916 -2.417 ML 34 32 6 37 6 1 1 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 53 U A - - MP 39 38 6 43 6 2 2 62 81 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.065 -3.886 -3.917 -0.190 -2.886 -4.493 1.439 -3.573 -3.923 0.083 -4.303 -1.789 3.265 -4.221 -0.566 -2.760 ML 40 38 6 43 6 1 1 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 52 U A - - MP 45 44 6 49 6 2 2 60 79 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.065 -3.886 -3.917 -0.190 -2.886 -4.493 1.439 -3.573 -3.923 0.083 -4.303 -1.789 3.265 -4.221 -0.566 -2.760 ML 46 44 6 49 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 51 U A - - MP 51 50 6 55 6 2 2 58 77 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.065 -3.886 -3.917 -0.190 -2.886 -4.493 1.439 -3.573 -3.923 0.083 -4.303 -1.789 3.265 -4.221 -0.566 -2.760 ML 52 50 6 55 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 50 C G - - MP 57 56 6 61 6 2 2 56 75 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.429 -4.324 -4.139 -0.567 -2.884 -4.567 3.512 -3.682 -4.185 -0.309 -4.458 -2.270 0.642 -4.506 -0.588 -3.029 ML 58 56 6 61 6 1 1 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 49 G C - - MP 63 62 6 67 6 2 2 54 73 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.626 -3.039 -4.715 0.276 -5.070 -4.648 -0.463 -4.949 -4.251 3.609 -4.597 -0.734 -0.852 -4.392 -2.494 -3.594 ML 64 62 6 67 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 48 G C - - MP 69 68 6 73 6 2 2 52 71 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.626 -3.039 -4.715 0.276 -5.070 -4.648 -0.463 -4.949 -4.251 3.609 -4.597 -0.734 -0.852 -4.392 -2.494 -3.594 ML 70 68 6 73 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 47 A U - - MP 75 74 6 79 6 2 2 50 69 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 76 74 6 79 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 46 A U - - MP 81 80 6 85 6 2 2 48 67 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 82 80 6 85 6 1 1 46 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 45 A U - - MP 87 86 6 91 6 2 2 46 65 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 88 86 6 91 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 44 A U - - MP 93 92 6 97 6 2 2 44 63 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 94 92 6 97 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 43 C G - - MP 99 98 6 103 6 2 2 42 61 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -4.429 -4.324 -4.139 -0.567 -2.884 -4.567 3.512 -3.682 -4.185 -0.309 -4.458 -2.270 0.642 -4.506 -0.588 -3.029 ML 100 98 6 103 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 42 G C - - MP 105 104 6 109 4 2 2 40 59 -6.882 -7.089 -0.056 -5.503 -4.626 -3.039 -4.715 0.276 -5.070 -4.648 -0.463 -4.949 -4.251 3.609 -4.597 -0.734 -0.852 -4.392 -2.494 -3.594 ML 106 104 6 109 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 40 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 39 58 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 42 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - C - - - ML 111 110 6 113 3 1 1 37 56 -7.903 -0.022 -6.557 -1.594 1.582 -2.413 -1.038 D 112 110 6 113 3 0 0 36 55 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 114 113 3 116 3 1 1 36 55 -8.298 -0.019 -6.616 0.866 -0.923 -1.036 0.216 D 115 113 3 116 3 0 0 35 54 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 41 - U - - MR 117 116 3 119 3 1 1 35 54 -8.298 -0.019 -6.616 -1.374 -1.390 -2.102 1.585 D 118 116 3 119 3 0 0 33 52 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 40 - A - - MR 120 119 3 122 5 1 1 34 53 -7.040 -0.041 -6.856 -7.068 -7.960 1.691 -2.249 -1.893 -1.780 D 121 119 3 122 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 21 39 u a - - MP 123 122 3 127 6 2 2 33 52 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.258 -3.319 -3.202 0.157 1.922 -3.806 1.839 -3.004 -3.245 0.303 -3.660 -1.545 2.004 -3.450 -0.110 -2.212 ML 124 122 3 127 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 22 38 u a - - MP 129 128 6 133 6 2 2 31 50 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.377 -3.346 -3.325 0.274 -2.431 -3.955 1.849 -3.093 -3.347 0.511 -3.772 -1.415 2.532 -3.558 1.311 -2.265 ML 130 128 6 133 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 23 37 A U - - MP 135 134 6 139 6 2 2 29 48 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 136 134 6 139 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 24 36 A U - - MP 141 140 6 145 6 2 2 27 46 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 142 140 6 145 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 25 35 A U - - MP 147 146 6 151 6 2 2 25 44 -9.083 -9.022 -0.021 -7.799 -8.078 -8.473 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 148 146 6 151 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 26 34 A U - - MP 153 152 6 157 4 2 2 23 42 -6.882 -7.089 -0.056 -5.503 -3.693 -2.750 -3.719 3.264 -4.008 -5.062 0.285 -3.767 -3.615 1.185 -4.158 -0.243 -0.133 -4.266 -1.656 -2.559 ML 154 152 6 157 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 27 - G - - - ML 159 158 6 161 3 1 1 20 39 -7.903 -0.022 -6.557 -1.450 -2.649 1.692 -2.036 D 160 158 6 161 3 0 0 19 38 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 28 - G - - - ML 162 161 3 164 3 1 1 19 37 -7.903 -0.022 -6.557 -1.450 -2.649 1.692 -2.036 D 163 161 3 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 29 - C - - - ML 165 164 3 167 3 1 1 18 36 -7.903 -0.022 -6.557 -1.594 1.582 -2.413 -1.038 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 30 - G - - - ML 168 167 3 170 3 1 1 16 35 -7.903 -0.022 -6.557 -1.450 -2.649 1.692 -2.036 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - u - - - ML 171 170 3 173 3 1 1 15 33 -7.903 -0.022 -6.557 -0.690 0.069 -1.443 0.973 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - A - - - ML 174 173 3 176 3 1 1 13 32 -7.903 -0.022 -6.557 1.691 -2.249 -1.893 -1.780 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - a - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 0.987 -1.347 0.057 -0.776 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME rox1 ACC RF01667 DESC Drosophila rox1 ncRNA LENG 59 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 18:36:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01667/CM NSEQ 3 EFFN 2.651367 CKSUM 2073611753 STATS LOCAL MSV -7.9402 0.71935 STATS LOCAL VITERBI -8.5306 0.71935 STATS LOCAL FORWARD -3.4346 0.71935 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.32338 1.65097 1.33911 1.27359 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 0.00000 * 1 3.17410 2.03101 2.92180 0.25731 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 2 3.15852 2.02993 2.91465 0.25884 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 3 3.36158 0.20535 3.14531 2.22652 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 4 2.84736 3.74455 0.12536 3.31927 4 G - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 5 3.07133 1.64844 2.87926 0.34939 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 6 1.98700 3.04650 0.27358 2.90558 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 7 3.13807 2.02850 2.90517 0.26089 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 8 3.13708 2.02843 2.90471 0.26100 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 9 3.13599 2.02835 2.90420 0.26111 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 10 3.34290 0.20709 3.13607 2.22319 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 11 2.67716 3.38397 0.14940 3.32141 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 12 2.67671 3.38340 0.14949 3.32063 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 13 0.28730 2.94983 1.96006 2.87330 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 14 0.28735 2.94960 1.96001 2.87298 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 15 0.28739 2.94941 1.95997 2.87272 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 16 0.28742 2.94926 1.95994 2.87250 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 17 3.33781 0.20757 3.13354 2.22227 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 18 2.67522 3.38153 0.14979 3.31805 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 19 3.02139 0.16932 3.59714 2.53043 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 20 0.72355 2.14197 2.23050 1.23762 20 a - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 21 2.77830 0.63234 2.60285 1.10128 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 22 2.57827 1.52663 2.35527 0.49109 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 23 0.28689 2.95172 1.96045 2.87595 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 24 0.28695 2.95143 1.96039 2.87555 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 25 0.28704 2.95105 1.96031 2.87502 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 26 0.28712 2.95067 1.96023 2.87448 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 27 2.84736 3.74455 0.12536 3.31927 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 28 2.84736 3.74455 0.12536 3.31927 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 29 3.02139 0.16932 3.59714 2.53043 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 30 2.84736 3.74455 0.12536 3.31927 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 31 2.05407 1.30544 2.59228 0.64267 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 32 0.13260 3.38372 3.09384 3.10260 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 33 0.63195 2.52206 1.30833 2.13806 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 34 3.09868 2.27115 2.76100 0.23766 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 35 3.10018 2.27136 2.76160 0.23750 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 36 3.10211 2.27163 2.76237 0.23729 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 37 3.10464 2.27198 2.76338 0.23702 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 38 0.84260 2.52297 0.93140 2.35189 38 a - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 39 0.48739 2.76780 1.40457 2.55747 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 40 0.13260 3.38372 3.09384 3.10260 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 41 2.74627 2.68724 3.26882 0.18667 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 42 3.50918 0.17811 3.21861 2.37285 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 43 2.49941 3.30005 0.17919 3.10017 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 44 3.09431 2.27054 2.75925 0.23813 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 45 3.09475 2.27060 2.75942 0.23809 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 46 3.09528 2.27068 2.75964 0.23803 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 47 3.09594 2.27077 2.75990 0.23796 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 48 3.51412 0.17772 3.22087 2.37379 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 49 3.51572 0.17759 3.22160 2.37409 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 50 2.50182 3.30349 0.17859 3.10422 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 51 0.29605 3.09148 1.86518 2.88339 51 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 52 0.29586 3.09252 1.86531 2.88462 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 53 0.29562 3.09390 1.86549 2.88623 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 54 3.11993 2.02866 2.84477 0.26634 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 55 2.21105 3.06498 0.24339 2.81689 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 56 2.84736 3.74455 0.12536 3.31927 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 57 2.50977 3.31490 0.17660 3.11765 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 58 0.29386 3.10400 1.86678 2.89809 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04109 3.90571 3.90571 1.46634 0.26236 1.09861 0.40547 59 0.29259 3.11133 1.86771 2.90671 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02075 3.88538 * 1.46634 0.26236 0.00000 * //