# STOCKHOLM 1.0
#=GF ID ceN47
#=GF AC RF01637
#=GF DE Nematode snoRNA ceN47
#=GF AU Osuch I
#=GF GA 35.0
#=GF NC 34.5
#=GF TC 35.4
#=GF SE INFERNAL
#=GF SS Predicted;Osuch I;
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 18.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 17903271
#=GF RT Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap
#=GF RT structures in Caenorhabditis elegans.
#=GF RA Jia D, Cai L, He H, Skogerbo G, Li T, Aftab MN, Chen R
#=GF RL BMC Mol Biol. 2007;8:86.
#=GF WK Small_nucleolar_RNA
#=GF SQ 6

AY948630.1/1-155             ACGUAAAUGAAGAAAUACCAUCCUUGCUCUGCGA--GUCGUUGAGC--AAUCACUUGAGAACUCUGA-UGA-GGUAUUGUAGCAUCGGGUUACGGUAG-CCGAGUCAGUUGAUUCUCAUCAUGUGGCACUUCGACGGUGAACAGUUAUGGCCUCUGAUACGU
AAGD02001042.1/12284-12133   AUGUGCGUGAAGAAAUACCAUCCUUGCUCUGCGA--GGCGAUGGAC--ACACACUCGAGAACCCUGC-GGA-GGUACCGUAGCAACGGGUUACAGUAA-CCGAAGCAGUCGAUUCUC---UAGUGGUUCUUCGCCGGUGAACAGUUAUGGCCUCUGACACAU
CAAC02000522.1/191093-190937 CGUUAAAUGAAGAAAUACCAUCCUUGCUCUGCGAUGGCCGUCAAAC--AUACACUUGAGAAUUCUGUGUGAGGGUACUGUAGCAUCGGGUUACUGUACACCAAUCCAGACGAUUCUC---AGGUGGUUUGACGCCGGUGAACAGCUAUGGCCUCUGAUAACG
DQ789432.1/2-154             U---AAAUGAAGAAAUACCAUCCUUGCUCUGCGAUGGCCGUCGAACACAUACACUUGAGAAUUCUGAGUGAGGGUACUGUAGCAUCGGGUUACUGUACACCAAUCCAGACGAUUCUC---AGGUGGUUCGACGCCGGUGAACAGCUAUGGCCUCUGAU---A
DQ789547.1/1-149             U---AAAUGAAGAAAUACCAUCCUUGCUCUGCGA--GUCGUUGAGC--AAUCACUUGAGAACUCUGA-UGA-GGUAUUGUAGCAUCGGGUUACGGUAG-CCGAGUCAGUUGAUUCUCAUCAUGUGGCACUUCGACGGUGAACAGUUAUGGCCUCUGAU---A
ABLE03021199.1/11625-11773   UCGUAAAUGAUGAGAAAACAUCCUUGCUCUGCGA--GUCGUUUGGC--AAAUUGUUUUUCUGGAAAU-UGG-AAAUUUUAAACAUCGGGUUUA------UUAUUUCACUUGAUUCGGAAACUCAUG-GCUUCGACGGUGAACAGCGUUGGCCUCUGAUACGU
#=GC SS_cons                 :<<<______________________________..__________..___________________.___.__________________________.___________________________________________________________>>>:
#=GC RF                      ucgUAAAUGAAGAAAUAcCAUCCUUGCUCUGCGA..GuCGUUgaaC..AaaCAcUUGAGAAuucUGu.UGA.GGUAuUGUAGCAUCGGGUUAcuGUAa.CCaAuuCAguuGAUUCUcAuaaugUGGuuCuuCGaCGGUGAACAGuUAUGGCCUCUGAUAcgu
//
