# STOCKHOLM 1.0
#=GF ID ceN40
#=GF AC RF01630
#=GF DE Nematode snoRNA ceN40
#=GF AU Osuch I
#=GF GA 35.0
#=GF NC 34.9
#=GF TC 35.6
#=GF SE INFERNAL
#=GF SS Predicted; Osuch I
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 21.75 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 17903271
#=GF RT Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap
#=GF RT structures in Caenorhabditis elegans.
#=GF RA Jia D, Cai L, He H, Skogerbo G, Li T, Aftab MN, Chen R
#=GF RL BMC Mol Biol. 2007;8:86.
#=GF WK Small_nucleolar_RNA
#=GF SQ 4

AY948677.1/1-122           CAGCGGUGAUCGAUGACUUGUGCAGUGGCCGAGGCGAUCGGAUUGUGAUGUCGCCUGAA-AAGGCGG-GACCCAACGUCGCGCCUUUCGCCAGAAGAUGGAAAU--AUGCGCAACGUCUGAGCUGA
DQ789544.1/1-118           ---CGGUGAUCGAUGACUUGUGCAGUGGCCGAGGCGAUCGGAUUGUGAUGUCGCCUGAA-AAGGCGG-GACCCAACGUCGCGCCUUUCGCCAGAAGAUGGAAAU--AUGCGCAACGUCUGAGCUG-
DQ789456.1/1-123           GGGCGAUGAUCGAAAUCUUGUGCAGCGGCCGAGGCGUUUGUGCUG-GACGUGGCCUGAAUAAGGCUGUAACCCAACGUUCCGCCUUUCGCCAGAAGAUGGAUGC-UUUGCGCAAUGUCUGAGCC-U
ABEG02001388.1/25733-25610 UGGCGAUGAUAGAAAUCUUGUGCAACGGCCGAGGCGAUCGGAUUGCGACGUCGCCUGAG-AAGGCGG-GACCCAACGUCGCGCCUUUCGCCAGACGAUGGAUACUCUUGCACAGUGUCUGAGCUCC
#=GC SS_cons               :<<<_______________________________________________________._______.____________________________________.________________>>>::
#=GC RF                    ugGCGaUGAUcGAaauCUUGUGCAguGGCCGAGGCGaUcGgAUUGuGAuGUcGCCUGAA.AAGGCgG.gACCCAACGUcgCGCCUUUCGCCAGAaGAUGGAuAu.uuUGCgCAAuGUCUGAGCcgu
//
