INFERNAL1/a [1.1.5 | Sep 2023] NAME ceN108 ACC RF01611 DESC Caenorhabditis snoRNA ceN108 STATES 214 NODES 68 CLEN 70 W 98 ALPH RNA RF no CONS yes MAP yes DATE Sat Jul 13 03:18:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01611/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.760742 CKSUM 111647812 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 53.00 NC 47.60 EFP7GF -8.1851 0.71875 ECMLC 0.70291 -5.22068 3.05531 1600000 403274 0.002976 ECMGC 0.38394 -17.41130 -2.71930 1600000 112679 0.003550 ECMLI 0.66809 -3.62016 4.68792 1600000 308863 0.003885 ECMGI 0.43673 -10.84601 1.26716 1600000 79351 0.005041 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 98 133 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 IL 1 1 2 1 6 1 25 100 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 25 99 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 75 G C - - MP 3 2 3 7 6 2 27 98 133 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 4 2 3 7 6 1 22 96 132 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 22 96 131 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 17 93 128 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 24 98 133 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 24 97 133 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 74 U A - - MP 9 8 6 13 6 2 26 96 131 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.056 -3.876 -3.908 -0.181 -2.880 -4.485 1.445 -3.566 -3.915 0.093 -4.295 -1.780 3.260 -4.212 -0.559 -2.752 ML 10 8 6 13 6 1 22 95 130 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 20 94 130 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 17 92 127 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 23 96 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 23 95 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 73 G C - - MP 15 14 6 19 6 2 24 94 129 -9.081 -9.020 -0.022 -7.797 -8.076 -8.471 -4.617 -3.035 -4.706 0.282 -5.057 -4.645 -0.452 -4.939 -4.245 3.607 -4.591 -0.729 -0.841 -4.386 -2.483 -3.584 ML 16 14 6 19 6 1 21 93 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 19 92 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 16 90 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 22 94 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 22 93 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 72 C G - - MP 21 20 6 25 4 2 22 92 127 -6.877 -7.084 -0.056 -5.498 -4.420 -4.314 -4.131 -0.558 -2.878 -4.560 3.509 -3.675 -4.176 -0.298 -4.451 -2.259 0.649 -4.497 -0.582 -3.021 ML 22 20 6 25 4 1 20 91 127 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 17 91 126 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 16 90 125 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 21 93 128 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 21 92 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 27 26 6 29 3 1 21 90 125 -7.899 -0.022 -6.553 0.330 -1.455 0.869 -0.858 D 28 26 6 29 3 0 15 88 123 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 20 91 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 30 29 3 32 3 1 20 89 124 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 31 29 3 32 3 0 14 87 122 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 19 90 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 19 88 123 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 34 32 3 35 3 0 14 86 121 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 18 89 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 18 87 122 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 37 35 3 38 3 0 13 85 120 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 18 88 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 18 86 121 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 40 38 3 41 3 0 12 84 119 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 17 87 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 42 41 3 44 3 1 17 85 120 -7.899 -0.022 -6.553 0.251 0.619 -1.180 -0.263 D 43 41 3 44 3 0 11 83 118 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 16 86 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 45 44 3 47 3 1 16 84 119 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 46 44 3 47 3 0 11 82 117 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 15 85 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 48 47 3 50 3 1 15 83 118 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 49 47 3 50 3 0 10 81 116 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 15 84 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 51 50 3 53 3 1 15 82 117 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 52 50 3 53 3 0 9 80 115 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 14 83 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - c - - - ML 54 53 3 56 3 1 14 81 116 -7.899 -0.022 -6.553 -0.715 0.775 -1.505 0.409 D 55 53 3 56 3 0 8 79 114 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 13 82 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 57 56 3 59 3 1 13 80 115 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 58 56 3 59 3 0 8 78 113 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 12 81 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 60 59 3 62 3 1 13 79 114 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 61 59 3 62 3 0 7 77 112 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 12 80 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - G - - - ML 63 62 3 65 3 1 12 78 113 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 64 62 3 65 3 0 6 76 111 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 11 79 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - G - - - ML 66 65 3 68 3 1 11 77 112 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 67 65 3 68 3 0 5 75 110 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 10 78 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 69 68 3 71 3 1 10 76 111 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 70 68 3 71 3 0 5 74 109 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 9 77 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 72 71 3 74 3 1 10 75 110 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 73 71 3 74 3 0 4 73 108 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 9 76 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 75 74 3 77 3 1 9 74 109 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 76 74 3 77 3 0 3 72 107 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 8 75 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 78 77 3 80 3 1 8 73 108 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 79 77 3 80 3 0 2 71 106 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 7 74 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 81 80 3 83 3 1 8 72 107 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 82 80 3 83 3 0 2 70 105 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 6 73 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 84 83 3 86 3 1 7 71 106 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 85 83 3 86 3 0 1 69 104 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 6 72 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 87 86 3 89 3 1 6 70 105 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 88 86 3 89 3 0 0 68 103 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 5 71 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 90 89 3 92 3 1 6 69 104 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 91 89 3 92 3 0 0 67 102 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 4 70 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 93 92 3 95 3 1 5 68 103 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 94 92 3 95 3 0 0 66 101 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 4 69 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 96 95 3 98 3 1 5 67 102 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 97 95 3 98 3 0 0 65 100 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 3 68 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - G - - - ML 99 98 3 101 3 1 4 66 101 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 100 98 3 101 3 0 0 64 99 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 3 67 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 102 101 3 104 3 1 4 65 100 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 103 101 3 104 3 0 0 63 98 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 2 66 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 105 104 3 107 3 1 3 64 99 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 106 104 3 107 3 0 0 62 97 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 2 65 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 108 107 3 110 3 1 3 63 98 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 109 107 3 110 3 0 0 61 96 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 64 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - A - - - ML 111 110 3 113 3 1 2 62 97 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 112 110 3 113 3 0 0 60 95 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 63 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - a - - - ML 114 113 3 116 3 1 2 61 96 -7.899 -0.022 -6.553 0.863 -0.920 -1.033 0.219 D 115 113 3 116 3 0 0 59 94 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 62 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 117 116 3 119 3 1 2 60 95 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 118 116 3 119 3 0 0 58 93 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 61 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - c - - - ML 120 119 3 122 3 1 1 59 94 -7.899 -0.022 -6.553 0.260 0.610 -1.177 -0.262 D 121 119 3 122 3 0 0 57 92 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 60 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - u - - - ML 123 122 3 125 3 1 1 58 93 -7.899 -0.022 -6.553 -0.383 -0.844 -0.151 0.828 D 124 122 3 125 3 0 0 56 91 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 59 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - U - - - ML 126 125 3 128 3 1 1 57 92 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 127 125 3 128 3 0 0 54 90 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 58 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - a - - - ML 129 128 3 131 3 1 1 56 91 -2.595 -0.280 -6.553 0.374 -0.198 -0.039 -0.219 D 130 128 3 131 3 0 0 50 86 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 59 94 -0.754 -1.382 -5.424 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - u - - - ML 132 131 3 134 3 1 1 43 62 -7.899 -0.022 -6.553 -0.383 -0.844 -0.151 0.828 D 133 131 3 134 3 0 0 41 61 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - U - - - ML 135 134 3 137 3 1 1 42 61 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 136 134 3 137 3 0 0 40 60 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - G - - - ML 138 137 3 140 3 1 1 41 60 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 139 137 3 140 3 0 0 39 59 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - A - - - ML 141 140 3 143 3 1 1 39 59 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 142 140 3 143 3 0 0 38 58 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - - - ML 144 143 3 146 3 1 1 38 58 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 145 143 3 146 3 0 0 37 57 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - G - - - ML 147 146 3 149 3 1 1 37 57 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 148 146 3 149 3 0 0 36 55 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - C - - - ML 150 149 3 152 3 1 1 36 55 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 151 149 3 152 3 0 0 35 54 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - C - - - ML 153 152 3 155 3 1 1 35 54 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 154 152 3 155 3 0 0 34 53 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - A - - - ML 156 155 3 158 3 1 1 34 53 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 157 155 3 158 3 0 0 33 52 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - A - - - ML 159 158 3 161 3 1 1 33 52 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 160 158 3 161 3 0 0 32 51 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - C - - - ML 162 161 3 164 3 1 1 32 51 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 163 161 3 164 3 0 0 31 50 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - U - - - ML 165 164 3 167 3 1 1 31 50 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 166 164 3 167 3 0 0 30 49 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 56 - U - - - ML 168 167 3 170 3 1 1 30 49 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 169 167 3 170 3 0 0 29 48 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - U - - - ML 171 170 3 173 3 1 1 29 48 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 172 170 3 173 3 0 0 27 47 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - U - - - ML 174 173 3 176 3 1 1 27 46 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 175 173 3 176 3 0 0 26 45 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - a - - - ML 177 176 3 179 3 1 1 26 45 -7.899 -0.022 -6.553 0.325 -0.817 -0.030 0.263 D 178 176 3 179 3 0 0 25 44 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - A - - - ML 180 179 3 182 3 1 1 25 44 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.769 D 181 179 3 182 3 0 0 24 43 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - a - - - ML 183 182 3 185 3 1 1 24 43 -7.899 -0.022 -6.553 0.990 -1.344 0.049 -0.773 D 184 182 3 185 3 0 0 23 42 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - a - - - ML 186 185 3 188 3 1 1 23 42 -7.899 -0.022 -6.553 0.863 -0.920 -1.033 0.219 D 187 185 3 188 3 0 0 22 41 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 63 - A - - - ML 189 188 3 191 3 1 1 22 40 -2.595 -0.280 -6.553 1.689 -2.240 -1.885 -1.769 D 190 188 3 191 3 0 0 20 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.883 -0.541 -4.583 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - u - - - ML 192 191 3 194 3 1 1 20 39 -7.899 -0.022 -6.553 -0.687 0.062 -1.440 0.976 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - - - ML 195 194 3 197 3 1 1 19 37 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 196 194 3 197 3 0 0 18 37 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - G - - - ML 198 197 3 200 3 1 1 18 36 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 199 197 3 200 3 0 0 17 36 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - C - - - ML 201 200 3 203 3 1 1 16 35 -7.899 -0.022 -6.553 -1.583 1.579 -2.401 -1.029 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - U - - - ML 204 203 3 206 3 1 1 15 33 -7.899 -0.022 -6.553 -1.365 -1.383 -2.093 1.582 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - G - - - ML 207 206 3 209 3 1 1 13 32 -7.899 -0.022 -6.553 -1.440 -2.638 1.689 -2.024 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 71 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.689 -2.240 -1.885 -1.769 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME ceN108 ACC RF01611 DESC Caenorhabditis snoRNA ceN108 LENG 70 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Jul 13 03:18:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01611/CM NSEQ 3 EFFN 1.883789 CKSUM 111647812 STATS LOCAL MSV -8.0406 0.71875 STATS LOCAL VITERBI -9.0852 0.71875 STATS LOCAL FORWARD -3.5855 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29555 1.67669 1.40250 1.22663 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 0.00000 * 1 2.45437 3.01543 0.20626 2.96742 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 2 2.73784 1.72388 2.44882 0.39970 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 3 2.44343 3.00390 0.20918 2.95084 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 4 2.97140 0.30389 2.71107 1.93543 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 5 1.15862 2.42677 0.76712 2.01432 5 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 6 0.20012 3.00578 2.75311 2.68624 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 7 2.39384 2.39525 2.90122 0.27100 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 8 2.45611 3.29781 0.19758 2.87262 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 9 0.20012 3.00578 2.75311 2.68624 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 10 1.21366 0.93926 2.23044 1.58723 10 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 11 2.39384 2.39525 2.90122 0.27100 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 12 2.45611 3.29781 0.19758 2.87262 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 13 0.20012 3.00578 2.75311 2.68624 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 14 1.91145 0.83122 2.46339 1.10421 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 15 2.39384 2.39525 2.90122 0.27100 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 16 2.39384 2.39525 2.90122 0.27100 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 17 2.45611 3.29781 0.19758 2.87262 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 18 2.45611 3.29781 0.19758 2.87262 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 19 0.20012 3.00578 2.75311 2.68624 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 20 2.39384 2.39525 2.90122 0.27100 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 21 0.20012 3.00578 2.75311 2.68624 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 22 0.20012 3.00578 2.75311 2.68624 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 23 2.45611 3.29781 0.19758 2.87262 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 24 2.39384 2.39525 2.90122 0.27100 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 25 2.39384 2.39525 2.90122 0.27100 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 26 2.39384 2.39525 2.90122 0.27100 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 27 2.56393 0.26849 3.13403 2.16351 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 28 2.45611 3.29781 0.19758 2.87262 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 29 2.45611 3.29781 0.19758 2.87262 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 30 2.56393 0.26849 3.13403 2.16351 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 31 2.39384 2.39525 2.90122 0.27100 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 32 2.45611 3.29781 0.19758 2.87262 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 33 0.20012 3.00578 2.75311 2.68624 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 34 0.77827 2.04030 2.12101 1.23477 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 35 0.20012 3.00578 2.75311 2.68624 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 36 1.20735 0.94512 2.22769 1.58668 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 37 1.67018 1.98967 1.48849 0.79999 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 38 2.39384 2.39525 2.90122 0.27100 38 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 39 1.12631 1.51978 1.40638 1.55125 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.24833 1.61570 3.85616 1.39184 0.28584 1.09861 0.40547 40 1.67018 1.98967 1.48849 0.79999 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 41 2.39384 2.39525 2.90122 0.27100 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 42 2.45611 3.29781 0.19758 2.87262 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 43 0.20012 3.00578 2.75311 2.68624 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 44 2.39384 2.39525 2.90122 0.27100 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 45 2.45611 3.29781 0.19758 2.87262 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 46 2.56393 0.26849 3.13403 2.16351 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 47 2.56393 0.26849 3.13403 2.16351 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 48 0.20012 3.00578 2.75311 2.68624 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 49 0.20012 3.00578 2.75311 2.68624 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 50 2.56393 0.26849 3.13403 2.16351 54 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 51 2.39384 2.39525 2.90122 0.27100 55 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 52 2.39384 2.39525 2.90122 0.27100 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 53 2.39384 2.39525 2.90122 0.27100 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 54 2.39384 2.39525 2.90122 0.27100 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 55 1.16019 1.96454 1.40150 1.20356 59 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 56 0.20012 3.00578 2.75311 2.68624 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 57 0.68861 2.34636 1.34681 1.95235 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 58 0.77827 2.04030 2.12101 1.23477 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 59 0.20012 3.00578 2.75311 2.68624 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.24833 1.61570 3.85616 0.20072 1.70453 1.09861 0.40547 60 1.89016 1.33864 2.41467 0.69845 65 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 61 2.39384 2.39525 2.90122 0.27100 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 62 2.45611 3.29781 0.19758 2.87262 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 63 2.56393 0.26849 3.13403 2.16351 68 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 64 2.39384 2.39525 2.90122 0.27100 69 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 65 2.45611 3.29781 0.19758 2.87262 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 66 0.20012 3.00578 2.75311 2.68624 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 67 2.21293 2.87910 0.26269 2.72635 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 68 3.17334 0.24554 2.83619 2.14382 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 69 0.45492 2.62978 1.56058 2.48422 74 A - - > 1.38629 1.38629 1.38629 1.38629 0.04322 3.85616 3.85616 1.46634 0.26236 1.09861 0.40547 70 3.20037 0.24254 2.84713 2.14891 75 C - - > 1.38629 1.38629 1.38629 1.38629 0.02184 3.83478 * 1.46634 0.26236 0.00000 * //