# STOCKHOLM 1.0
#=GF ID ceN102
#=GF AC RF01608
#=GF DE Caenorhabditis snoRNA ceN80
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 46.6
#=GF TC 51.7
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold;
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 34.56 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 17903271
#=GF RT Systematic identification of non-coding RNA 2,2,7-trimethylguanosine cap
#=GF RT structures in Caenorhabditis elegans.
#=GF RA Jia D, Cai L, He H, Skogerbo G, Li T, Aftab MN, Chen R
#=GF RL BMC Mol Biol. 2007;8:86.
#=GF WK Small_nucleolar_RNA
#=GF SQ 4

AY948646.1/1-142           UAUCCAUGUUUACUACUACUUUUCAUCUCUUUUUCACUGAAAUGUCGAGUAUUUUUGCGAUGCAUGGUAAAGAAAU-------CAAGGUGACCAGGUUUCUUUUCAAUUUUCCCCCAU----AAUUGAAGAGUUACAAUGCCAUCUGACAAGG
AAGD02009255.1/32794-32653 AUCCCAUGUUUACUACUACUUGCUACCUCUAUA-AUUUGAGAUUUCGAGUAUUUUUGCGAUGCAUGGAAAAUAAAAG----ACUAAAAUGGCCAGGUUUCUUUUCAUA--UUCCAAAU----UGAUGAAAAGUUACAAUGUCAUUUCACAAAA
DQ789505.1/1-143           AAACCAUGUUUACUACUACUUGUCACCUCUCC--CCUUGAGAUUUCGAGUAUUUUUGCGAUGCAUGGAAAAUGAAAUUUCAAAAAAUCUGACCAGGUUUCUUUCUA----ACCCUUAU----AGCUAGAAAGUUACAAUGUUAGUUGACAAUU
ABLE03020925.1/355-491     CAUCCAUGUUUACUACUACUUG--AUCUCUGUUUUUGGAGUUUUUCGAGUAUU-UUGCGAUGCAUGGGAGAGAAA---------AUUGUGACCAGGUUUCUU--CAAAUUUCCCAAUUUCGGACUUGA--AGUUACAAUGUCAUUGUACAAUA
#=GC SS_cons               :::<<<<<<-------<<<<<<-----<<____.____>>----->>>>>>---------->>>>>>::::::::::....::::<<<<<<<---<<--<<<<<<<<_..________....__>>>>>>>>-->>--->>>>>>>:::::::
#=GC RF                    aauCCAUGuUUACUACUACUugucAuCuCUuUu.uuuuGagaUuUcgAGUAUUUUUGCGAUgCAUGGaAAAuAAAau....AauAaggUGaCCAGGUUUCUuuccAaa..ucCCaaaU....aauUggaaAGUUACAAUGuCAccuuACAAua
//
