# STOCKHOLM 1.0
#=GF ID RUF4
#=GF AC RF01582
#=GF DE RNA of unknown function RUF4
#=GF AU Osuch I
#=GF GA 55.0
#=GF NC 54.5
#=GF TC 55.4
#=GF SE INFERNAL
#=GF SS Predicted; WAR; Clustal_alifold;
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.48 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 17901154
#=GF RT Structural RNAs of known and unknown function identified in malaria
#=GF RT parasites by comparative genomics and RNA analysis.
#=GF RA Chakrabarti K, Pearson M, Grate L, Sterne-Weiler T, Deans J, Donohue JP,
#=GF RA Ares M Jr
#=GF RL RNA. 2007;13:1923-1939.
#=GF WK Plasmodium_RUF4_RNA
#=GF SQ 2

ABHA01003077.1/889-1165  AUUUAUAUUUAUUUAUUUGUAGUCCCUUUUUGAAGGGAAAGAAAUUAUGUAUACACCUCAUGUGUAUAUAGACAAUUUUUUUUCCCAUAUAUUCACUUGUAAAAAGGGUAAAUAAAUUUUAUAAUUUAAUCACAUGUGUAUUUUUAUUUUAUUUAUAAGUUUUUUAUGAAUAAAAUUAGUAGUAAAUAUACAUGCUUCGU
AE014187.2/982251-982525 AUUUAUAUUUAUUUAUUUGUAGUCCCUUUUUGAAGGGAAAGAAAUUAUGUAUACACCUCAUGUGUAUAUAGACAAUUUUUUUUCCCAUAUAUUCACUUGUAAAAAGGGUAAAUAAAUUUUAUAAUUUAAUCACAUGUGUAUUUUUAUUUUAUUUAUAAGUUUUUUAUGAAUAAAAUUAGUAGUA-AUAUACAUGCUUCGU
#=GC SS_cons             ::(((((---(((((((((----(((((((,,,,<<<<<<<<<<---<<<<<<<<<_____>>>>>>>>>------>>>>>>>>>>,<<<<______>>>>))))))))))))))))--)))))::::(((,,<<<<<<<<<---<<<<<<<<<<<<<<___>>>>>>>>>>>>>>------->->>>>>>>><<_____
#=GC RF                  AUuuauaUUUauuuauuugUAGUCCCuuuuUGAAGGGaaagaaaUUAuguauaCaCCUCAUGuGuauacaGACAAUuuucuuuCCCAuacaUUCACUuguaaaaaGGGcaaauaaauUUuauaaUUUAauCACauGuguauuUUUauuuuauucauaagUUUcuuaugaauaaaauUAGUAGUaAauacaCauGCUUCGU

ABHA01003077.1/889-1165  GCGAUAAAGACAUUUAAAAAAGAGAUGAACCAAAAAAUCUUCAUAAGCGAUAUAUACGUUAGAUAUGUAAUAGACAU
AE014187.2/982251-982525 GCGAUAAAGACAUUUAA-AAAGAAAUGAACAAAAAAAUGUGCAUAUGUAAUAUAUAUGUUAUAUAUGUAAUACAUAU
#=GC SS_cons             >>))):::::<<<<<_______>>>>>::::::::::<<<-<<<<<<<<<<______>>>>>>>>>>---->>>:::
#=GC RF                  GCGauAAAGACaucuAAAAAAGagauGAACaAAAAAAuguuCauaugcgacAUAUAugucgcauauGUAAUacauAU
//
