INFERNAL1/a [1.1.5 | Sep 2023] NAME TB9Cs4H1 ACC RF01557 DESC Trypanosomatid snoRNA TB9Cs4H1 STATES 190 NODES 49 CLEN 62 W 90 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 19:01:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01557/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.667969 CKSUM 1590339889 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 48.00 NC 34.30 EFP7GF -9.7179 0.71994 ECMLC 0.60798 -6.63313 2.87059 1600000 387764 0.003095 ECMGC 0.42687 -16.92372 -3.72548 1600000 111909 0.003574 ECMLI 0.60290 -4.88852 4.20842 1600000 289129 0.004150 ECMGI 0.45402 -12.72485 -0.89753 1600000 85932 0.004655 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 123 -7.223 -7.430 -0.044 -5.844 IL 1 1 2 1 4 1 20 92 126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 92 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 90 123 -8.221 -0.017 -6.875 -0.923 0.444 -1.719 0.854 D 4 2 3 5 3 0 14 88 121 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 91 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 89 122 -8.221 -0.017 -6.875 0.138 -1.870 1.149 -1.293 D 7 5 3 8 3 0 14 87 120 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 90 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 18 88 121 -8.596 -0.016 -6.914 1.810 -2.892 -2.473 -2.488 D 10 8 3 11 3 0 13 87 120 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 17 88 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - G - - MR 12 11 3 14 3 1 17 87 120 -8.596 -0.016 -6.914 -2.119 -3.414 1.821 -2.801 D 13 11 3 14 3 0 11 85 118 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 87 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - A - - MR 15 14 3 17 3 1 17 86 119 -8.596 -0.016 -6.914 1.810 -2.892 -2.473 -2.488 D 16 14 3 17 3 0 10 84 117 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 86 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - G - - MR 18 17 3 20 5 1 16 85 118 -7.320 -0.033 -7.135 -7.347 -8.239 -2.119 -3.414 1.821 -2.801 D 19 17 3 20 5 0 9 83 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 13 85 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 64 G C - - MP 21 20 3 25 6 2 16 84 117 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -5.245 -3.338 -5.409 -0.146 -5.937 -4.884 -1.176 -5.675 -4.640 3.739 -4.944 -1.061 -1.549 -4.793 -3.243 -4.278 ML 22 20 3 25 6 1 11 82 115 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 10 82 115 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 6 79 112 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 83 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 83 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 63 G C - - MP 27 26 6 31 6 2 14 82 115 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -5.245 -3.338 -5.409 -0.146 -5.937 -4.884 -1.176 -5.675 -4.640 3.739 -4.944 -1.061 -1.549 -4.793 -3.243 -4.278 ML 28 26 6 31 6 1 10 80 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 80 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 77 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 11 81 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 81 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 62 U A - - MP 33 32 6 37 6 2 12 80 113 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -4.830 -4.666 -4.595 -0.921 -3.410 -5.098 0.927 -4.146 -4.594 -0.746 -4.935 -2.545 3.564 -4.952 -1.071 -3.344 ML 34 32 6 37 6 1 9 78 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 78 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 5 75 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 10 79 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 10 79 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 C G - - MP 39 38 6 43 6 2 10 78 111 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -4.135 -4.134 -3.912 -0.369 -2.692 -4.385 3.105 -3.461 -3.936 -0.189 -4.270 -2.157 0.901 -4.227 1.518 -2.790 ML 40 38 6 43 6 1 8 76 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 8 76 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 5 74 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 9 77 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 77 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 60 g c - - MP 45 44 6 49 6 2 8 76 109 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -3.162 -2.748 -3.190 0.831 -2.851 -3.933 1.452 -3.279 -3.277 2.378 -3.740 -0.643 1.540 -3.283 0.637 -2.162 ML 46 44 6 49 6 1 7 75 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 75 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 4 73 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 7 75 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 75 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 59 c g - - MP 51 50 6 55 4 2 6 74 107 -7.223 -7.430 -0.598 -1.613 -2.632 0.238 -2.751 0.751 -2.364 -3.547 2.073 -2.841 -2.780 1.004 -3.302 -0.825 2.040 -2.900 -0.227 -1.818 ML 52 50 6 55 4 1 6 74 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 5 73 106 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 4 72 105 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 6 75 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 6 74 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - C - - - ML 57 56 6 59 3 1 5 72 105 -7.725 -0.333 -2.311 -1.181 1.430 -1.978 -0.711 D 58 56 6 59 3 0 4 71 104 -8.249 -0.258 -2.641 IL 59 59 3 59 3 1 6 73 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - u - - - ML 60 59 3 62 3 1 6 71 105 -8.013 -0.020 -6.667 0.224 -0.863 -1.164 0.876 D 61 59 3 62 3 0 1 70 103 -7.487 -0.469 -1.879 IL 62 62 3 62 3 1 4 72 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - G - - - ML 63 62 3 65 3 1 5 70 104 -8.221 -0.017 -6.875 -2.119 -3.414 1.821 -2.801 D 64 62 3 65 3 0 0 68 102 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 71 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - U - - - ML 66 65 3 68 3 1 5 69 103 -8.221 -0.017 -6.875 -1.972 -1.885 -2.726 1.733 D 67 65 3 68 3 0 0 67 101 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 70 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 69 68 3 71 3 1 4 68 102 -8.221 -0.017 -6.875 -2.119 -3.414 1.821 -2.801 D 70 68 3 71 3 0 0 66 100 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 2 69 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - U - - - ML 72 71 3 74 3 1 3 67 101 -8.221 -0.017 -6.875 -1.972 -1.885 -2.726 1.733 D 73 71 3 74 3 0 0 66 99 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 68 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 75 74 3 77 3 1 3 66 100 -8.596 -0.016 -6.914 1.810 -2.892 -2.473 -2.488 D 76 74 3 77 3 0 0 65 98 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 67 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 58 - a - - MR 78 77 3 80 3 1 2 65 99 -8.596 -0.016 -6.914 0.247 0.134 -0.145 -0.300 D 79 77 3 80 3 0 0 63 97 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 66 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - A - - MR 81 80 3 83 3 1 2 64 98 -8.596 -0.016 -6.914 1.199 -1.276 -1.345 -0.156 D 82 80 3 83 3 0 0 62 96 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 65 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - G - - MR 84 83 3 86 3 1 2 63 97 -8.596 -0.016 -6.914 0.138 -1.870 1.149 -1.293 D 85 83 3 86 3 0 0 61 95 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 64 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - G - - MR 87 86 3 89 3 1 1 62 96 -8.596 -0.016 -6.914 -2.119 -3.414 1.821 -2.801 D 88 86 3 89 3 0 0 60 94 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 63 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - U - - MR 90 89 3 92 3 1 1 61 95 -8.596 -0.016 -6.914 -1.972 -1.885 -2.726 1.733 D 91 89 3 92 3 0 0 59 93 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 62 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 53 - A - - MR 93 92 3 95 3 1 1 60 94 -8.596 -0.016 -6.914 1.810 -2.892 -2.473 -2.488 D 94 92 3 95 3 0 0 59 92 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 61 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 52 - A - - MR 96 95 3 98 5 1 1 59 93 -7.320 -0.033 -7.135 -7.347 -8.239 1.810 -2.892 -2.473 -2.488 D 97 95 3 98 5 0 0 58 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 60 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 51 C G - - MP 99 98 3 103 6 2 2 58 92 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -5.118 -5.072 -4.708 -1.262 -3.314 -5.045 3.694 -4.180 -4.782 -1.089 -4.976 -3.032 0.136 -5.148 -1.039 -3.605 ML 100 98 3 103 6 1 1 57 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 56 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 53 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 58 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 58 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 50 C G - - MP 105 104 6 109 6 2 2 56 90 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -5.118 -5.072 -4.708 -1.262 -3.314 -5.045 3.694 -4.180 -4.782 -1.089 -4.976 -3.032 0.136 -5.148 -1.039 -3.605 ML 106 104 6 109 6 1 1 55 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 54 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 51 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 56 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 56 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 49 C G - - MP 111 110 6 115 6 2 2 54 88 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -4.135 -4.134 -3.912 -0.369 -2.692 -4.385 3.105 -3.461 -3.936 -0.189 -4.270 -2.157 0.901 -4.227 1.518 -2.790 ML 112 110 6 115 6 1 1 53 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 52 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 49 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 54 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 54 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 48 C G - - MP 117 116 6 121 6 2 2 52 86 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -5.118 -5.072 -4.708 -1.262 -3.314 -5.045 3.694 -4.180 -4.782 -1.089 -4.976 -3.032 0.136 -5.148 -1.039 -3.605 ML 118 116 6 121 6 1 1 50 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 50 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 47 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 52 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 52 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 47 g c - - MP 123 122 6 127 4 2 2 50 84 -7.223 -1.784 -0.545 -5.844 -3.581 -2.503 -3.632 1.907 -4.321 -4.624 0.075 -3.938 -3.616 2.451 -4.083 1.880 -0.179 -3.838 -1.846 -2.510 ML 124 122 6 127 4 1 1 48 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 47 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 46 79 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 50 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 51 84 -0.801 -1.292 -5.832 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - U - - - ML 129 128 6 131 3 1 1 39 62 -8.221 -0.017 -6.875 -1.026 -0.095 -1.793 1.191 D 130 128 6 131 3 0 0 38 60 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 41 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - G - - - ML 132 131 3 134 3 1 1 38 61 -8.596 -0.016 -6.914 -2.119 -3.414 1.821 -2.801 D 133 131 3 134 3 0 0 37 60 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 39 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - u - - MR 135 134 3 137 3 1 1 37 60 -8.596 -0.016 -6.914 -0.404 0.268 -0.285 0.286 D 136 134 3 137 3 0 0 35 58 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 38 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 42 - A - - MR 138 137 3 140 3 1 1 36 59 -8.596 -0.016 -6.914 1.085 -1.177 -1.275 0.032 D 139 137 3 140 3 0 0 34 57 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 37 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 41 - u - - MR 141 140 3 143 5 1 1 35 58 -7.320 -0.033 -7.135 -7.347 -8.239 -0.923 0.444 -1.719 0.854 D 142 140 3 143 5 0 0 34 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 35 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 24 40 C G - - MP 144 143 3 148 6 2 2 34 57 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -4.139 -4.137 -3.915 -0.371 -2.693 -4.387 3.118 -3.463 -3.939 -0.190 -4.272 -2.158 0.901 -4.231 1.481 -2.792 ML 145 143 3 148 6 1 1 33 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 32 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 25 39 G C - - MP 150 149 6 154 6 2 2 32 55 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -4.258 -2.847 -4.280 0.623 -5.097 -4.706 -0.437 -4.670 -4.135 3.353 -4.514 1.063 -0.710 -4.180 -2.431 -3.166 ML 151 149 6 154 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 30 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 31 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 26 38 c g - - MP 156 155 6 160 6 2 2 30 53 -9.219 -9.158 -0.020 -7.934 -8.214 -8.609 -3.692 -3.667 -3.617 0.060 -2.616 -4.234 2.683 -3.308 -3.618 0.242 -4.037 -1.677 1.830 -3.861 1.347 -2.507 ML 157 155 6 160 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 29 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 27 37 C G - - MP 162 161 6 166 4 2 2 28 51 -7.223 -7.430 -0.044 -5.844 -5.118 -5.072 -4.708 -1.262 -3.314 -5.045 3.694 -4.180 -4.782 -1.089 -4.976 -3.032 0.136 -5.148 -1.039 -3.605 ML 163 161 6 166 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 27 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 26 49 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 29 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 28 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - C - - - ML 168 167 6 170 3 1 1 26 49 -8.221 -0.017 -6.875 -1.092 1.067 -1.932 0.232 D 169 167 6 170 3 0 0 24 47 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 29 - c - - - ML 171 170 3 173 3 1 1 25 48 -1.885 -0.473 -6.875 0.021 0.954 -1.561 -0.497 D 172 170 3 173 3 0 0 20 43 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 48 -1.162 -0.915 -5.455 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - C - - - ML 174 173 3 176 3 1 1 17 36 -8.221 -0.017 -6.875 -1.092 1.067 -1.932 0.232 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - U - - - ML 177 176 3 179 3 1 1 16 35 -8.221 -0.017 -6.875 -1.026 -0.095 -1.793 1.191 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - u - - - ML 180 179 3 182 3 1 1 15 33 -8.221 -0.017 -6.875 0.097 -0.173 -1.180 0.680 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - G - - - ML 183 182 3 185 3 1 1 13 31 -8.221 -0.017 -6.875 0.102 -1.889 1.173 -1.313 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - U - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.972 -1.885 -2.726 1.733 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB9Cs4H1 ACC RF01557 DESC Trypanosomatid snoRNA TB9Cs4H1 LENG 62 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 19:01:44 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01557/CM NSEQ 4 EFFN 3.496094 CKSUM 1590339889 STATS LOCAL MSV -8.2036 0.71994 STATS LOCAL VITERBI -8.8979 0.71994 STATS LOCAL FORWARD -3.4814 0.71994 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58727 1.40082 1.12841 1.48910 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 2.18448 1.02842 2.75190 0.76339 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 1.30815 2.87376 0.52738 2.48840 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 0.09234 3.72461 3.40426 3.47862 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 2.90691 3.72239 0.11035 3.66292 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 2.90638 3.72164 0.11043 3.66191 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 3.57056 2.36841 3.38005 0.16938 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 3.03216 0.53087 2.82952 1.18858 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 2.07194 1.74521 0.93754 1.17811 8 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 1.60160 1.21716 1.89150 1.04551 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.42844 4.12713 1.10158 1.46634 0.26236 1.09861 0.40547 10 2.48886 0.29042 3.05620 2.10387 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.30792 3.74702 1.42115 1.46634 0.26236 0.09264 2.42504 11 1.23185 2.07234 2.28588 0.73257 11 u - - - 1.38629 1.38629 1.38629 1.38629 0.03864 3.96584 3.96584 1.46634 0.26236 0.17848 1.81120 12 3.18130 4.11623 0.08663 3.68300 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 3.07441 2.96196 3.60659 0.13362 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 3.18130 4.11623 0.08663 3.68300 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 3.07441 2.96196 3.60659 0.13362 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 0.09234 3.72461 3.40426 3.47862 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.71215 0.14384 3.54255 2.51816 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 3.71228 0.14383 3.54262 2.51819 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 3.03271 0.53080 2.82978 1.18857 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.70876 0.14405 3.54073 2.51752 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 1.33408 2.79412 0.50635 2.62087 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.27392 1.44757 2.81401 0.50752 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 3.18130 4.11623 0.08663 3.68300 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.03341 0.52170 2.82985 1.20625 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 2.32182 3.15006 0.21144 3.00307 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.65744 0.83883 2.43563 0.89131 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 3.70870 0.14406 3.54070 2.51751 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 2.32778 0.57590 2.93287 1.24811 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.40045 0.64184 2.64569 1.85640 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.39427 1.17216 4.12713 0.72970 0.65788 1.09861 0.40547 30 2.32778 0.57590 2.93287 1.24811 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 2.27392 1.44757 2.81401 0.50752 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 1.32406 1.49872 2.28114 0.89560 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.33661 2.88823 0.51119 2.50342 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 3.07441 2.96196 3.60659 0.13362 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 2.79980 3.70794 0.12354 3.47803 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 1.41926 2.60624 0.51754 2.42692 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.23730 0.39141 2.96901 1.45556 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 2.18140 2.99645 0.25326 2.79875 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 2.18448 1.02842 2.75190 0.76339 41 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 0.58368 2.31492 2.38998 1.37931 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.74524 1.15306 1.56901 1.19906 43 c - - - 1.38629 1.38629 1.38629 1.38629 0.39427 1.17216 4.12713 1.11270 0.39850 1.09861 0.40547 42 2.85389 1.04907 2.59680 0.65854 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 2.79982 3.70797 0.12354 3.47806 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.17877 2.99242 0.25430 2.79369 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.80434 3.71512 0.12275 3.48610 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 2.80816 3.72119 0.12209 3.49292 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 0.09234 3.72461 3.40426 3.47862 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 0.09234 3.72461 3.40426 3.47862 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.07441 2.96197 3.60659 0.13362 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.18130 4.11623 0.08663 3.68300 55 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 1.30815 2.87376 0.52738 2.48840 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 0.50204 2.39409 2.45202 1.52635 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 1.22141 1.25320 1.46674 1.66643 58 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 1.17937 1.56408 1.09109 1.91463 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 1.58678 1.01503 1.29795 1.83300 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 2.17806 2.99135 0.25457 2.79241 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 0.19199 3.57580 2.20447 3.31370 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 3.85194 0.13203 3.57462 2.59807 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 3.86483 0.13132 3.58078 2.60040 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 3.18130 4.11623 0.08663 3.68300 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 0.09234 3.72461 3.40426 3.47862 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 3.18130 4.11623 0.08663 3.68300 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //