INFERNAL1/a [1.1.4 | Dec 2020] NAME TB9Cs4H1 ACC RF01557 DESC Trypanosomatid snoRNA TB9Cs4H1 STATES 190 NODES 49 CLEN 62 W 90 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:27:41 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 2.652344 CKSUM 1590339889 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 47.90 NC 33.60 EFP7GF -9.7375 0.71986 ECMLC 0.60440 -6.69164 2.86625 1600000 387278 0.003099 ECMGC 0.43160 -16.69829 -3.64970 1600000 111666 0.003582 ECMLI 0.60634 -4.80876 4.22964 1600000 287917 0.004168 ECMGI 0.46213 -12.42756 -0.81140 1600000 85791 0.004662 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 90 124 -7.217 -7.424 -0.044 -5.838 IL 1 1 2 1 4 1 20 93 126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 92 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 20 90 124 -8.216 -0.017 -6.870 -0.917 0.497 -1.717 0.811 D 4 2 3 5 3 0 14 88 122 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 91 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 89 123 -8.216 -0.017 -6.870 0.103 -1.883 1.171 -1.307 D 7 5 3 8 3 0 14 88 121 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 90 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 18 88 122 -8.591 -0.016 -6.909 1.809 -2.882 -2.464 -2.477 D 10 8 3 11 3 0 13 87 120 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 17 89 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - G - - MR 12 11 3 14 3 1 17 87 121 -8.591 -0.016 -6.909 -2.109 -3.403 1.819 -2.789 D 13 11 3 14 3 0 11 85 119 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 88 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - A - - MR 15 14 3 17 3 1 17 86 120 -8.591 -0.016 -6.909 1.809 -2.882 -2.464 -2.477 D 16 14 3 17 3 0 10 84 118 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 87 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - G - - MR 18 17 3 20 5 1 16 85 119 -7.315 -0.033 -7.131 -7.343 -8.235 -2.109 -3.403 1.819 -2.789 D 19 17 3 20 5 0 9 84 117 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 13 85 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 64 G C - - MP 21 20 3 25 6 2 16 84 118 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -5.235 -3.333 -5.398 -0.139 -5.924 -4.880 -1.165 -5.663 -4.635 3.737 -4.939 -1.055 -1.538 -4.787 -3.232 -4.267 ML 22 20 3 25 6 1 11 83 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 10 82 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 6 79 113 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 84 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 83 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 63 G C - - MP 27 26 6 31 6 2 14 82 116 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -5.235 -3.333 -5.398 -0.139 -5.924 -4.880 -1.165 -5.663 -4.635 3.737 -4.939 -1.055 -1.538 -4.787 -3.232 -4.267 ML 28 26 6 31 6 1 10 81 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 80 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 77 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 11 82 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 81 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 62 U A - - MP 33 32 6 37 6 2 12 80 114 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -4.817 -4.653 -4.583 -0.908 -3.401 -5.087 0.936 -4.136 -4.583 -0.732 -4.924 -2.532 3.560 -4.940 -1.062 -3.334 ML 34 32 6 37 6 1 9 79 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 78 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 5 76 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 10 80 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 10 79 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 C G - - MP 39 38 6 43 6 2 10 78 112 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -4.131 -4.128 -3.909 -0.363 -2.689 -4.382 3.115 -3.458 -3.932 -0.182 -4.266 -2.150 0.906 -4.224 1.478 -2.786 ML 40 38 6 43 6 1 8 77 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 8 77 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 5 74 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 9 78 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 78 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 60 g c - - MP 45 44 6 49 6 2 8 76 110 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -3.138 -2.756 -3.173 0.821 -2.812 -3.920 1.482 -3.251 -3.253 2.326 -3.721 -0.665 1.583 -3.271 0.680 -2.146 ML 46 44 6 49 6 1 7 75 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 75 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 4 73 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 7 76 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 76 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 59 u a - - MP 51 50 6 55 4 2 6 74 108 -7.217 -7.424 -0.592 -1.625 -2.628 0.168 -2.747 0.755 -2.361 -3.545 2.060 -2.837 -2.777 1.008 -3.300 -0.823 2.066 -2.897 -0.223 -1.814 ML 52 50 6 55 4 1 6 74 107 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 5 74 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 4 72 106 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 6 75 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 6 74 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - C - - - ML 57 56 6 59 3 1 5 73 106 -7.725 -0.351 -2.245 -1.182 1.430 -1.979 -0.712 D 58 56 6 59 3 0 4 72 105 -8.235 -0.260 -2.627 IL 59 59 3 59 3 1 6 74 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - u - - - ML 60 59 3 62 3 1 6 72 105 -7.996 -0.020 -6.650 0.199 -0.856 -1.163 0.890 D 61 59 3 62 3 0 1 70 104 -7.530 -0.453 -1.921 IL 62 62 3 62 3 1 4 73 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - G - - - ML 63 62 3 65 3 1 5 71 104 -8.216 -0.017 -6.870 -2.109 -3.403 1.819 -2.789 D 64 62 3 65 3 0 0 69 102 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 72 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - U - - - ML 66 65 3 68 3 1 5 70 103 -8.216 -0.017 -6.870 -1.963 -1.877 -2.717 1.731 D 67 65 3 68 3 0 0 68 101 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 71 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 69 68 3 71 3 1 4 69 102 -8.216 -0.017 -6.870 -2.109 -3.403 1.819 -2.789 D 70 68 3 71 3 0 0 67 100 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 2 70 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - U - - - ML 72 71 3 74 3 1 3 68 101 -8.216 -0.017 -6.870 -1.963 -1.877 -2.717 1.731 D 73 71 3 74 3 0 0 66 99 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 69 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - A - - - ML 75 74 3 77 3 1 3 67 100 -8.591 -0.016 -6.909 1.809 -2.882 -2.464 -2.477 D 76 74 3 77 3 0 0 65 99 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 1 67 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 58 - a - - MR 78 77 3 80 3 1 2 66 99 -8.591 -0.016 -6.909 0.219 0.184 -0.178 -0.293 D 79 77 3 80 3 0 0 64 97 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 66 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - A - - MR 81 80 3 83 3 1 2 65 98 -8.591 -0.016 -6.909 1.167 -1.244 -1.320 -0.103 D 82 80 3 83 3 0 0 63 96 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 65 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - G - - MR 84 83 3 86 3 1 2 64 97 -8.591 -0.016 -6.909 0.103 -1.883 1.171 -1.307 D 85 83 3 86 3 0 0 62 95 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 64 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - G - - MR 87 86 3 89 3 1 1 63 96 -8.591 -0.016 -6.909 -2.109 -3.403 1.819 -2.789 D 88 86 3 89 3 0 0 61 94 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 63 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - U - - MR 90 89 3 92 3 1 1 62 95 -8.591 -0.016 -6.909 -1.963 -1.877 -2.717 1.731 D 91 89 3 92 3 0 0 60 93 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 62 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 53 - A - - MR 93 92 3 95 3 1 1 61 94 -8.591 -0.016 -6.909 1.809 -2.882 -2.464 -2.477 D 94 92 3 95 3 0 0 59 92 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 61 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 52 - A - - MR 96 95 3 98 5 1 1 60 93 -7.315 -0.033 -7.131 -7.343 -8.235 1.809 -2.882 -2.464 -2.477 D 97 95 3 98 5 0 0 58 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 60 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 51 C G - - MP 99 98 3 103 6 2 2 59 92 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -5.107 -5.060 -4.699 -1.250 -3.306 -5.037 3.692 -4.172 -4.773 -1.077 -4.968 -3.019 0.144 -5.137 -1.032 -3.595 ML 100 98 3 103 6 1 1 57 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 57 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 54 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 58 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 58 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 50 C G - - MP 105 104 6 109 6 2 2 57 90 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -5.107 -5.060 -4.699 -1.250 -3.306 -5.037 3.692 -4.172 -4.773 -1.077 -4.968 -3.019 0.144 -5.137 -1.032 -3.595 ML 106 104 6 109 6 1 1 55 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 55 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 52 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 56 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 56 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 49 C G - - MP 111 110 6 115 6 2 2 55 88 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -4.131 -4.128 -3.909 -0.363 -2.689 -4.382 3.115 -3.458 -3.932 -0.182 -4.266 -2.150 0.906 -4.224 1.478 -2.786 ML 112 110 6 115 6 1 1 53 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 53 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 50 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 54 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 54 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 48 C G - - MP 117 116 6 121 6 2 2 53 86 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -5.107 -5.060 -4.699 -1.250 -3.306 -5.037 3.692 -4.172 -4.773 -1.077 -4.968 -3.019 0.144 -5.137 -1.032 -3.595 ML 118 116 6 121 6 1 1 51 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 50 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 48 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 52 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 52 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 47 g c - - MP 123 122 6 127 4 2 2 51 84 -7.217 -1.721 -0.573 -5.838 -3.582 -2.500 -3.638 1.894 -4.332 -4.646 0.062 -3.935 -3.609 2.419 -4.079 1.949 -0.192 -3.858 -1.859 -2.511 ML 124 122 6 127 4 1 1 48 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 48 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 46 80 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 50 84 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 51 84 -0.794 -1.300 -5.873 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - U - - - ML 129 128 6 131 3 1 1 39 62 -8.216 -0.017 -6.870 -1.034 -0.138 -1.799 1.211 D 130 128 6 131 3 0 0 38 61 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 41 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - G - - - ML 132 131 3 134 3 1 1 38 61 -8.591 -0.016 -6.909 -2.109 -3.403 1.819 -2.789 D 133 131 3 134 3 0 0 37 60 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 39 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - c - - MR 135 134 3 137 3 1 1 37 60 -8.591 -0.016 -6.909 -0.412 0.315 -0.317 0.265 D 136 134 3 137 3 0 0 35 58 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 38 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 42 - A - - MR 138 137 3 140 3 1 1 36 59 -8.591 -0.016 -6.909 1.105 -1.190 -1.283 -0.001 D 139 137 3 140 3 0 0 35 58 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 37 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 41 - u - - MR 141 140 3 143 5 1 1 35 58 -7.315 -0.033 -7.131 -7.343 -8.235 -0.917 0.497 -1.717 0.811 D 142 140 3 143 5 0 0 34 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 35 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 24 40 C G - - MP 144 143 3 148 6 2 2 34 57 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -4.137 -4.134 -3.913 -0.366 -2.690 -4.385 3.132 -3.460 -3.936 -0.184 -4.270 -2.153 0.905 -4.229 1.428 -2.789 ML 145 143 3 148 6 1 1 33 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 32 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 33 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 25 39 G C - - MP 150 149 6 154 6 2 2 32 55 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -4.268 -2.852 -4.290 0.615 -5.104 -4.703 -0.441 -4.681 -4.141 3.364 -4.518 1.020 -0.716 -4.183 -2.437 -3.177 ML 151 149 6 154 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 31 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 31 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 26 38 c g - - MP 156 155 6 160 6 2 2 30 53 -9.216 -9.156 -0.020 -7.932 -8.212 -8.607 -3.680 -3.655 -3.608 0.072 -2.612 -4.228 2.680 -3.301 -3.609 0.255 -4.030 -1.664 1.853 -3.851 1.306 -2.498 ML 157 155 6 160 6 1 1 29 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 30 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 30 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 27 37 C G - - MP 162 161 6 166 4 2 2 28 51 -7.217 -7.424 -0.044 -5.838 -5.107 -5.060 -4.699 -1.250 -3.306 -5.037 3.692 -4.172 -4.773 -1.077 -4.968 -3.019 0.144 -5.137 -1.032 -3.595 ML 163 161 6 166 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 27 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 26 49 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 29 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 29 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - C - - - ML 168 167 6 170 3 1 1 26 49 -8.216 -0.017 -6.870 -1.102 1.086 -1.942 0.203 D 169 167 6 170 3 0 0 24 47 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 29 - c - - - ML 171 170 3 173 3 1 1 25 48 -1.821 -0.497 -6.870 -0.025 0.985 -1.584 -0.505 D 172 170 3 173 3 0 0 20 43 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 49 -1.158 -0.917 -5.490 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - C - - - ML 174 173 3 176 3 1 1 17 36 -8.216 -0.017 -6.870 -1.102 1.086 -1.942 0.203 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - U - - - ML 177 176 3 179 3 1 1 16 35 -8.216 -0.017 -6.870 -1.034 -0.138 -1.799 1.211 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - u - - - ML 180 179 3 182 3 1 1 15 33 -8.216 -0.017 -6.870 0.069 -0.140 -1.187 0.682 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - G - - - ML 183 182 3 185 3 1 1 13 31 -8.216 -0.017 -6.870 0.054 -1.910 1.201 -1.334 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - U - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 -1.963 -1.877 -2.717 1.731 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME TB9Cs4H1 ACC RF01557 DESC Trypanosomatid snoRNA TB9Cs4H1 LENG 62 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:27:41 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 4 EFFN 3.496094 CKSUM 1590339889 STATS LOCAL MSV -8.2261 0.71986 STATS LOCAL VITERBI -8.9019 0.71986 STATS LOCAL FORWARD -3.4839 0.71986 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59098 1.39657 1.12820 1.49070 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 2.18364 0.98715 2.75441 0.79610 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 1.33654 2.88819 0.51122 2.50338 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 0.09234 3.72461 3.40426 3.47862 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 2.90691 3.72239 0.11035 3.66292 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 2.90638 3.72164 0.11043 3.66191 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 3.57056 2.36841 3.38005 0.16938 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 3.03233 0.52185 2.82933 1.20623 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 2.07944 1.72267 0.97249 1.14485 8 g - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 1.62098 1.22688 1.89058 1.02693 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.42906 4.12713 1.10036 1.46634 0.26236 1.09861 0.40547 10 2.49642 0.28812 3.06405 2.10988 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.32133 3.74643 1.38145 1.46634 0.26236 0.09253 2.42615 11 1.25188 2.06921 2.28802 0.72097 11 u - - - 1.38629 1.38629 1.38629 1.38629 0.03895 3.95807 3.95807 1.46634 0.26236 0.17219 1.84402 12 3.18130 4.11623 0.08663 3.68300 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 3.07441 2.96196 3.60659 0.13362 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 3.18130 4.11623 0.08663 3.68300 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 3.07441 2.96196 3.60659 0.13362 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 0.09234 3.72461 3.40426 3.47862 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.71214 0.14384 3.54255 2.51816 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 3.71228 0.14383 3.54262 2.51819 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 3.03287 0.52179 2.82959 1.20622 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.70876 0.14405 3.54073 2.51752 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 1.34385 2.81465 0.49784 2.63957 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 2.28560 1.48179 2.82399 0.49153 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 3.18130 4.11623 0.08663 3.68300 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.03409 0.50990 2.83009 1.22991 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 2.33108 3.15859 0.20930 3.01243 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.65000 0.84013 2.42764 0.89295 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 3.70870 0.14406 3.54070 2.51751 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 2.34070 0.56074 2.94674 1.27139 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.43927 0.61778 2.66952 1.86773 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.41473 1.12902 4.12713 0.72815 0.65932 1.09861 0.40547 30 2.34070 0.56074 2.94674 1.27139 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 2.28560 1.48179 2.82399 0.49153 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 1.34595 1.47233 2.28851 0.89428 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.37523 2.90841 0.49014 2.52432 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 3.07441 2.96196 3.60659 0.13362 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 2.79980 3.70794 0.12355 3.47803 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 36 1.40172 2.59843 0.52683 2.41952 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 37 3.24633 0.38253 2.97800 1.47816 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 38 2.18151 2.99673 0.25318 2.79930 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 2.18364 0.98715 2.75441 0.79610 41 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 0.56809 2.32838 2.40034 1.40548 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 1.75487 1.11662 1.59307 1.21609 43 c - - - 1.38629 1.38629 1.38629 1.38629 0.41473 1.12902 4.12713 1.11209 0.39879 1.09861 0.40547 42 2.87109 1.07650 2.61685 0.63574 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 2.79982 3.70797 0.12354 3.47806 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 2.17865 2.99226 0.25432 2.79375 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.80434 3.71512 0.12275 3.48610 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 2.80816 3.72119 0.12209 3.49292 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 0.09234 3.72461 3.40426 3.47862 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 0.09234 3.72461 3.40426 3.47862 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 3.07441 2.96196 3.60659 0.13362 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.18130 4.11623 0.08663 3.68300 55 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 1.33654 2.88819 0.51122 2.50338 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 0.52337 2.37122 2.43389 1.48538 57 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 1.24309 1.21471 1.49104 1.66297 58 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 1.15837 1.58337 1.09946 1.91279 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 1.55358 1.05135 1.27087 1.84227 60 c - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 2.17795 2.99119 0.25460 2.79247 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 0.19199 3.57580 2.20447 3.31370 62 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 3.85194 0.13203 3.57462 2.59807 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 3.86483 0.13132 3.58078 2.60040 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 3.18130 4.11623 0.08663 3.68300 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 0.09234 3.72461 3.40426 3.47862 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 3.18130 4.11623 0.08663 3.68300 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //