INFERNAL1/a [1.1.5 | Sep 2023] NAME TB9Cs3H1 ACC RF01555 DESC Trypanosomatid snoRNA TB9Cs3H1 STATES 208 NODES 54 CLEN 68 W 91 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 20:24:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01555/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.733398 CKSUM 1914403156 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.60 NC 40.40 EFP7GF -10.4930 0.71900 ECMLC 0.62457 -5.87732 3.25496 1600000 360001 0.003333 ECMGC 0.42054 -16.49447 -3.54161 1600000 92838 0.004309 ECMLI 0.60578 -4.35760 4.52888 1600000 261266 0.004593 ECMGI 0.46700 -11.19061 -0.26706 1600000 65696 0.006089 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 91 119 -7.245 -7.452 -0.043 -5.866 IL 1 1 2 1 4 1 27 94 122 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 26 93 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 26 91 119 -8.616 -0.016 -6.933 1.078 -0.210 -1.327 -0.675 D 4 2 3 5 3 0 21 90 118 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 25 92 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 73 - G - - MR 6 5 3 8 3 1 26 90 118 -8.616 -0.016 -6.933 -2.161 -3.461 1.826 -2.847 D 7 5 3 8 3 0 19 89 117 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 24 91 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 72 - A - - MR 9 8 3 11 3 1 25 89 117 -8.616 -0.016 -6.933 1.816 -2.934 -2.511 -2.534 D 10 8 3 11 3 0 18 88 116 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 23 90 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 71 - a - - MR 12 11 3 14 5 1 25 88 116 -7.338 -0.033 -7.154 -7.366 -8.258 0.670 -0.658 0.104 -0.514 D 13 11 3 14 5 0 17 87 115 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 21 89 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 2 70 G C - - MP 15 14 3 19 6 2 25 87 115 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -5.285 -3.357 -5.455 -0.174 -5.992 -4.898 -1.221 -5.722 -4.664 3.745 -4.966 -1.083 -1.593 -4.818 -3.291 -4.324 ML 16 14 3 19 6 1 19 86 114 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 19 85 114 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 14 83 111 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 21 87 115 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 21 87 115 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 3 69 C G - - MP 21 20 6 25 6 2 24 85 113 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -4.219 -4.172 -3.987 -0.345 -2.742 -4.464 3.223 -3.512 -4.001 -0.139 -4.335 -2.121 1.689 -4.304 -0.401 -2.834 ML 22 20 6 25 6 1 18 84 112 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 18 83 112 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 13 81 109 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 20 85 113 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 20 85 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 68 A U - - MP 27 26 6 31 6 2 23 83 111 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -3.582 -3.119 -3.605 3.308 -3.705 -4.719 0.233 -0.149 -3.664 0.562 -4.206 -0.893 -0.121 -3.991 -1.579 -2.652 ML 28 26 6 31 6 1 18 82 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 17 81 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 13 79 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 19 83 111 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 20 83 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 67 c g - - MP 33 32 6 37 6 2 21 81 109 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -3.402 -3.005 -3.449 0.570 -2.844 -4.203 2.686 -3.328 -3.402 0.939 -3.862 1.274 1.001 -3.652 -0.517 -2.333 ML 34 32 6 37 6 1 17 80 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 17 80 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 13 77 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 19 81 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 19 81 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 66 g c - - MP 39 38 6 43 6 2 19 79 107 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -3.698 -2.625 -3.732 2.574 -4.323 -4.728 0.112 -4.008 -3.710 2.608 -4.189 -0.187 -0.178 -3.947 -1.838 -2.602 ML 40 38 6 43 6 1 16 78 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 16 78 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 12 75 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 17 79 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 17 79 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 65 A U - - MP 45 44 6 49 6 2 17 77 105 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -4.316 -3.224 -4.283 3.587 -4.901 -6.026 -0.565 -4.289 -4.168 0.510 -4.740 -0.625 -0.979 -5.117 -2.503 -3.096 ML 46 44 6 49 6 1 15 76 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 14 76 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 12 74 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 16 77 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 16 77 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 64 U G - - MP 51 50 6 55 4 2 15 75 103 -7.245 -7.452 -0.043 -5.866 -4.659 -4.601 -4.232 -0.886 -2.832 -4.567 1.464 -3.652 -4.279 -0.787 -4.513 -2.588 0.543 -4.688 3.301 -3.123 ML 52 50 6 55 4 1 14 75 103 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 13 74 102 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 12 73 101 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 15 76 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 15 75 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 9 - U - - - ML 57 56 6 59 3 1 14 73 101 -8.242 -0.017 -6.896 -0.380 -1.146 -1.620 1.296 D 58 56 6 59 3 0 11 72 100 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 74 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - a - - - ML 60 59 3 62 3 1 13 72 100 -8.242 -0.502 -1.783 0.656 -0.996 -1.194 0.572 D 61 59 3 62 3 0 10 71 99 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 14 74 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - A - - - ML 63 62 3 65 3 1 13 72 100 -7.763 -0.024 -6.417 1.616 -1.971 -1.643 -1.477 D 64 62 3 65 3 0 10 70 98 -8.232 -0.261 -2.623 IL 65 65 3 65 3 1 12 73 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - A - - - ML 66 65 3 68 3 1 12 71 99 -8.242 -0.017 -6.896 1.816 -2.934 -2.511 -2.534 D 67 65 3 68 3 0 7 69 97 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 11 72 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - C - - - ML 69 68 3 71 3 1 12 70 98 -8.242 -0.017 -6.896 -2.422 1.766 -3.252 -1.702 D 70 68 3 71 3 0 6 68 96 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 11 71 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 72 71 3 74 3 1 11 69 97 -8.242 -0.017 -6.896 1.816 -2.934 -2.511 -2.534 D 73 71 3 74 3 0 6 67 95 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 10 70 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - C - - - ML 75 74 3 77 3 1 10 68 96 -8.616 -0.016 -6.933 -2.422 1.766 -3.252 -1.702 D 76 74 3 77 3 0 5 66 94 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 9 68 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 63 - U - - MR 78 77 3 80 3 1 9 67 95 -8.616 -0.016 -6.933 -2.012 -1.918 -2.768 1.740 D 79 77 3 80 3 0 3 65 93 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 8 67 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 62 - G - - MR 81 80 3 83 3 1 9 66 94 -8.616 -0.016 -6.933 -2.161 -3.461 1.826 -2.847 D 82 80 3 83 3 0 3 64 92 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 7 66 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 61 - A - - MR 84 83 3 86 3 1 8 65 93 -8.616 -0.016 -6.933 1.816 -2.934 -2.511 -2.534 D 85 83 3 86 3 0 2 63 91 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 7 65 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 60 - C - - MR 87 86 3 89 3 1 8 64 92 -8.616 -0.016 -6.933 -2.422 1.766 -3.252 -1.702 D 88 86 3 89 3 0 2 62 90 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 6 64 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 59 - C - - MR 90 89 3 92 3 1 7 63 91 -8.616 -0.016 -6.933 -2.422 1.766 -3.252 -1.702 D 91 89 3 92 3 0 1 61 89 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 5 63 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 58 - G - - MR 93 92 3 95 5 1 7 62 90 -7.338 -0.033 -7.154 -7.366 -8.258 -2.161 -3.461 1.826 -2.847 D 94 92 3 95 5 0 0 60 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 4 62 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 16 57 G C - - MP 96 95 3 100 6 2 8 61 89 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -5.285 -3.357 -5.455 -0.174 -5.992 -4.898 -1.221 -5.722 -4.664 3.745 -4.966 -1.083 -1.593 -4.818 -3.291 -4.324 ML 97 95 3 100 6 1 2 59 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 2 59 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 56 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 3 60 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 3 60 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 56 G C - - MP 102 101 6 106 6 2 7 59 87 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -5.285 -3.357 -5.455 -0.174 -5.992 -4.898 -1.221 -5.722 -4.664 3.745 -4.966 -1.083 -1.593 -4.818 -3.291 -4.324 ML 103 101 6 106 6 1 2 57 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 2 57 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 54 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 3 58 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 3 58 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 55 A U - - MP 108 107 6 112 6 2 5 57 85 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -4.316 -3.224 -4.283 3.587 -4.901 -6.026 -0.565 -4.289 -4.168 0.510 -4.740 -0.625 -0.979 -5.117 -2.503 -3.096 ML 109 107 6 112 6 1 2 55 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 2 55 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 53 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 2 56 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 2 56 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 54 u a - - MP 114 113 6 118 4 2 4 55 83 -7.245 -3.144 -0.212 -5.866 -3.975 -3.923 -3.822 -0.137 -2.694 -4.371 2.466 -3.426 -3.829 0.073 -4.205 -1.884 2.728 -4.103 -0.359 -2.685 ML 115 113 6 118 4 1 1 54 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 53 81 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 117 113 6 118 4 0 0 52 80 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 2 55 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 2 54 82 -1.803 -0.579 -4.503 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - c - - - ML 120 119 6 122 3 1 3 52 80 -8.242 -0.017 -6.896 -0.003 0.299 -0.489 0.084 D 121 119 6 122 3 0 0 51 79 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 53 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - c - - - ML 123 122 3 125 3 1 2 51 79 -8.616 -0.016 -6.933 -0.236 0.777 -1.450 0.099 D 124 122 3 125 3 0 0 50 78 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 52 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 52 - u - - MR 126 125 3 128 3 1 2 50 78 -8.616 -0.016 -6.933 -0.012 0.040 -0.481 0.338 D 127 125 3 128 3 0 0 48 76 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 51 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 51 - u - - MR 129 128 3 131 3 1 1 49 77 -8.616 -0.016 -6.933 0.063 -0.372 -0.113 0.331 D 130 128 3 131 3 0 0 48 76 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 50 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 50 - G - - MR 132 131 3 134 5 1 1 48 76 -7.338 -0.033 -7.154 -7.366 -8.258 -2.161 -3.461 1.826 -2.847 D 133 131 3 134 5 0 0 47 75 -5.352 -0.707 -2.978 -4.409 -2.404 IR 134 134 3 134 5 1 1 48 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 22 49 a u - - MP 135 134 3 139 6 2 2 47 75 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -3.540 -2.525 -3.601 2.370 -4.252 -4.679 0.074 -3.889 -3.577 2.216 -4.072 1.618 -0.173 -3.856 -1.828 -2.483 ML 136 134 3 139 6 1 1 46 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 3 139 6 1 1 46 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 3 139 6 0 0 44 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 47 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 46 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 23 48 C G - - MP 141 140 6 145 4 2 2 45 73 -7.245 -7.452 -0.043 -5.866 -5.164 -5.122 -4.746 -1.310 -3.343 -5.076 3.704 -4.215 -4.823 -1.142 -5.011 -3.084 0.100 -5.191 -1.072 -3.644 ML 142 140 6 145 4 1 1 45 73 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 44 72 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 43 71 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 46 74 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 45 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - c - - - ML 147 146 6 149 3 1 1 43 71 -8.242 -0.350 -2.239 -0.587 0.743 -0.668 0.045 D 148 146 6 149 3 0 0 42 70 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 44 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - u - - - ML 150 149 3 152 3 1 1 42 70 -7.914 -0.021 -6.568 -0.276 0.196 -0.311 0.290 D 151 149 3 152 3 0 0 41 69 -7.888 -0.340 -2.280 IL 152 152 3 152 3 1 1 43 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - u - - - ML 153 152 3 155 3 1 1 41 69 -8.616 -0.016 -6.933 -0.158 -0.309 -1.310 0.921 D 154 152 3 155 3 0 0 40 68 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 42 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 47 - g - - MR 156 155 3 158 5 1 1 40 68 -7.338 -0.033 -7.154 -7.366 -8.258 -0.061 -0.681 0.835 -0.659 D 157 155 3 158 5 0 0 39 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 41 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 27 46 g c - - MP 159 158 3 163 6 2 2 39 67 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -3.312 -2.395 -3.310 1.144 -3.817 -4.101 0.492 -3.730 -3.482 2.869 -3.900 0.767 0.226 -3.352 -1.400 -0.033 ML 160 158 3 163 6 1 1 38 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 37 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 35 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 39 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 39 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 28 45 g c - - MP 165 164 6 169 6 2 2 37 65 -9.228 -9.167 -0.019 -7.944 -8.224 -8.619 -3.435 -0.240 -3.437 1.829 -4.007 -4.174 0.299 -3.875 -3.577 2.872 -3.989 -0.170 0.046 -3.456 -1.583 -2.428 ML 166 164 6 169 6 1 1 35 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 35 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 33 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 37 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 37 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 29 44 c g - - MP 171 170 6 175 4 2 2 35 63 -2.328 -7.452 -0.362 -5.866 -3.255 -3.292 -3.270 0.205 -2.506 -3.948 2.838 0.253 -3.288 0.325 -3.747 -1.480 1.108 -3.481 0.775 -2.264 ML 172 170 6 175 4 1 1 33 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 32 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 31 59 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 36 64 -0.948 -4.210 -1.259 -6.695 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 33 - a - - - ML 177 176 6 179 3 1 1 24 42 -8.242 -0.017 -6.896 0.385 -0.213 0.083 -0.372 D 178 176 6 179 3 0 0 23 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 34 - U - - - ML 180 179 3 182 3 1 1 23 41 -8.242 -0.017 -6.896 -0.380 -1.146 -1.620 1.296 D 181 179 3 182 3 0 0 22 40 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - A - - - ML 183 182 3 185 3 1 1 21 40 -8.242 -0.017 -6.896 1.347 -1.457 -1.484 -0.444 D 184 182 3 185 3 0 0 20 39 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - c - - - ML 186 185 3 188 3 1 1 20 39 -3.155 -0.186 -6.896 -0.215 0.812 -1.464 0.030 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 39 -1.828 -0.567 -4.528 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - u - - - ML 189 188 3 191 3 1 1 19 37 -8.242 -0.017 -6.896 -0.943 0.573 -1.749 0.761 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 39 - U - - - ML 192 191 3 194 3 1 1 17 36 -8.242 -0.017 -6.896 -2.012 -1.918 -2.768 1.740 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 40 - u - - - ML 195 194 3 197 3 1 1 16 35 -8.242 -0.017 -6.896 -0.944 0.594 -1.752 0.743 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - a - - - ML 198 197 3 200 3 1 1 15 33 -8.242 -0.017 -6.896 0.758 -1.659 0.605 -1.083 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 42 - G - - - ML 201 200 3 203 3 1 1 13 31 -8.242 -0.017 -6.896 -0.452 -2.247 1.457 -1.678 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 43 - U - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -1.163 -0.420 -1.919 1.346 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB9Cs3H1 ACC RF01555 DESC Trypanosomatid snoRNA TB9Cs3H1 LENG 68 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 20:24:27 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01555/CM NSEQ 6 EFFN 3.952148 CKSUM 1914403156 STATS LOCAL MSV -8.2923 0.71900 STATS LOCAL VITERBI -9.0568 0.71900 STATS LOCAL FORWARD -3.7701 0.71900 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44975 1.36286 1.32657 1.41035 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 0.00000 * 1 0.56202 1.50700 2.51350 2.06054 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 2 3.01505 3.87385 0.09628 3.81808 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 3 3.07261 0.43337 2.85283 1.39553 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 4 0.33149 2.07246 2.30549 2.87242 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 5 2.43907 0.73756 1.25972 1.89216 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 6 0.81143 2.89151 0.83165 2.73404 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 7 0.15732 3.59755 2.43519 3.48676 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 8 3.47155 1.91572 3.33348 0.24076 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 9 1.73872 2.39484 2.74957 0.40180 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 10 0.88691 2.21767 2.35299 0.95678 10 a - - - 1.38629 1.38629 1.38629 1.38629 0.42928 4.22589 1.09539 1.46634 0.26236 1.09861 0.40547 11 0.17894 3.10726 2.84441 2.79770 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.04391 3.84053 3.84053 1.46634 0.26236 0.08378 2.52114 12 0.07839 3.88110 3.54838 3.64992 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 13 3.60815 0.09606 4.15526 3.01989 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 14 0.07839 3.88110 3.54838 3.64992 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 15 3.60815 0.09606 4.15526 3.01989 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 16 3.01315 3.87105 0.09654 3.81428 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 17 3.01251 3.87011 0.09663 3.81301 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 18 0.15702 3.60047 2.43592 3.49052 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 19 2.92606 1.01257 2.70118 0.66168 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 20 1.42272 1.11820 1.73157 1.36623 20 c - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 21 1.61855 0.75603 2.57939 1.36075 21 c - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 22 0.96825 2.92792 0.68889 2.73934 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 23 3.88644 0.12118 3.73384 2.66346 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 24 1.95330 0.77607 1.87460 1.40827 24 c - - - 1.38629 1.38629 1.38629 1.38629 0.30517 4.22589 1.39277 1.46634 0.26236 1.09861 0.40547 25 1.66114 1.19223 1.58390 1.19945 25 c - - - 1.38629 1.38629 1.38629 1.38629 0.03889 3.95961 3.95961 1.46634 0.26236 0.11123 2.25121 26 1.53587 1.61272 2.42907 0.69862 26 u - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 27 1.92290 2.54791 0.47875 1.85782 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 28 1.16440 2.64396 0.62864 2.48298 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 29 2.71393 0.48620 2.53190 1.43021 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.26728 1.51446 4.22589 0.94348 0.49310 1.09861 0.40547 30 1.11479 1.50468 1.28321 1.75571 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 31 1.73872 2.39484 2.74957 0.40180 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 32 0.37904 2.59861 2.63726 1.77464 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 33 1.60127 0.73083 2.59289 1.41861 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.16745 1.96918 4.22589 0.19765 1.71844 1.09861 0.40547 34 2.26859 0.91211 2.85227 0.82747 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 35 3.22700 3.09099 3.76267 0.11469 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 36 2.26981 0.89659 2.85495 0.84129 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 37 0.81306 2.80156 0.89928 2.41997 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 38 1.80181 3.24668 0.30155 2.87477 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 39 2.47112 1.71959 3.00236 0.37586 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 40 2.07133 2.70097 0.45922 1.74258 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 41 2.73655 0.60201 2.45204 1.19938 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 42 2.65212 0.66704 2.35747 1.13440 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 43 1.50358 1.88629 0.70444 2.02761 47 g - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 44 2.95077 3.90579 0.10317 3.66521 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 45 2.97784 1.25447 2.73079 0.51299 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 46 3.32877 4.27827 0.07391 3.83787 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 47 1.36302 1.65140 1.43617 1.15679 51 u - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 48 1.42308 1.32236 1.72169 1.15912 52 u - - - 1.38629 1.38629 1.38629 1.38629 0.15514 2.04720 4.22589 0.21278 1.65199 1.09861 0.40547 49 0.73254 2.86943 0.93017 2.68688 54 a - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 50 3.71212 2.80359 3.40846 0.12569 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 51 3.99363 0.11599 3.72952 2.70189 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 52 4.00897 0.11527 3.73705 2.70464 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 53 3.32877 4.27827 0.07391 3.83787 58 G - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 54 3.60815 0.09606 4.15526 3.01989 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 55 3.60815 0.09606 4.15526 3.01989 60 C - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 56 0.07839 3.88110 3.54838 3.64992 61 A - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 57 3.32877 4.27827 0.07391 3.83787 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 58 3.22700 3.09099 3.76267 0.11469 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 59 2.51028 3.51843 0.16416 3.20646 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 60 3.70023 2.80148 3.40297 0.12637 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 61 2.96660 0.93045 2.69668 0.72007 66 u - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 62 2.13651 2.32783 0.67830 1.28392 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 63 3.10298 2.60036 2.76324 0.20120 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 64 1.54432 3.02000 0.38751 2.83024 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 65 4.01108 0.11517 3.73808 2.70502 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 66 0.88813 1.86546 1.27185 1.87445 71 a - - : 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 67 0.07839 3.88110 3.54838 3.64992 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.02966 4.22589 4.22589 1.46634 0.26236 1.09861 0.40547 68 3.32877 4.27827 0.07391 3.83787 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.01494 4.21117 * 1.46634 0.26236 0.00000 * //