INFERNAL1/a [1.1.5 | Sep 2023] NAME TB9Cs2H1 ACC RF01554 DESC Trypanosomatid snoRNA TB9Cs2H1 STATES 208 NODES 55 CLEN 68 W 86 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 18:32:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01554/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.769531 CKSUM 4049155147 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 58.30 NC 38.80 EFP7GF -7.7384 0.71908 ECMLC 0.62549 -6.53889 2.83152 1600000 421318 0.002848 ECMGC 0.41796 -16.64702 -3.65099 1600000 91429 0.004375 ECMLI 0.60088 -5.03911 4.05193 1600000 282852 0.004243 ECMGI 0.45298 -11.75096 -0.44709 1600000 66959 0.005974 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 107 -6.803 -8.048 -0.084 -4.502 IL 1 1 2 1 4 1 20 87 108 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 88 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 70 - A - - MR 3 2 3 5 3 1 22 86 107 -8.297 -0.019 -6.614 1.691 -2.247 -1.891 -1.777 D 4 2 3 5 3 0 15 84 105 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 21 86 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 69 - G - - MR 6 5 3 8 3 1 21 85 106 -8.297 -0.019 -6.614 -1.448 -2.647 1.691 -2.033 D 7 5 3 8 3 0 14 83 104 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 20 85 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 68 - A - - MR 9 8 3 11 3 1 21 84 105 -8.297 -0.019 -6.614 1.691 -2.247 -1.891 -1.777 D 10 8 3 11 3 0 14 82 103 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 19 84 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - a - - MR 12 11 3 14 5 1 21 83 104 -7.039 -0.041 -6.855 -7.067 -7.959 0.669 -1.347 0.511 -0.756 D 13 11 3 14 5 0 13 81 103 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 17 83 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 1 66 G C - - MP 15 14 3 19 6 2 21 82 103 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 16 14 3 19 6 1 15 80 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 14 80 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 9 78 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 16 81 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 17 81 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 65 G C - - MP 21 20 6 25 6 2 21 80 101 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 22 20 6 25 6 1 14 78 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 14 78 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 9 76 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 16 79 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 16 79 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 64 c g - - MP 27 26 6 31 6 2 20 78 99 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -2.519 -2.478 -2.639 1.352 -2.259 -3.428 2.255 -0.155 -2.663 1.110 -3.180 -0.683 1.347 -2.791 -0.126 -1.706 ML 28 26 6 31 6 1 13 76 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 13 76 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 8 74 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 15 77 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 16 77 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 63 C G - - MP 33 32 6 37 6 2 18 76 97 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 34 32 6 37 6 1 13 74 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 12 74 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 8 72 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 15 75 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 15 75 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 62 C G - - MP 39 38 6 43 6 2 17 74 95 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 40 38 6 43 6 1 12 72 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 11 72 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 8 70 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 14 73 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 14 73 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 61 A U - - MP 45 44 6 49 6 2 15 72 93 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -3.691 -2.749 -3.717 3.263 -4.006 -5.059 0.288 -3.765 -3.613 1.187 -4.156 -0.242 -0.130 -4.264 -1.654 -2.557 ML 46 44 6 49 6 1 11 71 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 10 71 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 7 69 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 13 71 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 13 71 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 60 C G - - MP 51 50 6 55 4 2 13 70 91 -6.881 -7.088 -0.056 -5.502 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 52 50 6 55 4 1 10 70 91 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 8 69 91 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 7 68 90 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 12 71 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 12 70 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - A - - - ML 57 56 6 59 3 1 12 68 89 -7.902 -0.022 -6.556 1.691 -2.247 -1.891 -1.777 D 58 56 6 59 3 0 6 66 87 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 11 69 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - U - - - ML 60 59 3 62 3 1 11 67 88 -7.902 -0.022 -6.556 -1.372 -1.388 -2.099 1.584 D 61 59 3 62 3 0 6 65 86 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 10 68 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - U - - - ML 63 62 3 65 3 1 11 66 87 -7.902 -0.022 -6.556 -1.372 -1.388 -2.099 1.584 D 64 62 3 65 3 0 5 64 85 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 9 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 66 65 3 68 3 1 10 64 86 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 67 65 3 68 3 0 5 63 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 9 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - G - - - ML 69 68 3 71 3 1 9 63 85 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 70 68 3 71 3 0 4 62 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 8 65 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 72 71 3 74 3 1 9 62 84 -7.902 -0.022 -6.556 1.691 -2.247 -1.891 -1.777 D 73 71 3 74 3 0 4 61 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 8 64 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 75 74 3 77 3 1 8 61 83 -7.902 -0.022 -6.556 -1.448 -2.647 1.691 -2.033 D 76 74 3 77 3 0 3 60 81 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 7 63 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - U - - - ML 78 77 3 80 3 1 7 60 82 -7.902 -0.022 -6.556 -1.372 -1.388 -2.099 1.584 D 79 77 3 80 3 0 3 59 80 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 62 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - U - - - ML 81 80 3 83 3 1 7 59 80 -8.297 -0.019 -6.614 -1.372 -1.388 -2.099 1.584 D 82 80 3 83 3 0 2 58 79 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 5 60 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 59 - C - - MR 84 83 3 86 3 1 6 58 79 -8.297 -0.019 -6.614 -1.591 1.581 -2.410 -1.036 D 85 83 3 86 3 0 1 57 78 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 5 59 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 58 - A - - MR 87 86 3 89 3 1 5 57 78 -8.297 -0.019 -6.614 1.144 -1.401 -0.224 -0.849 D 88 86 3 89 3 0 0 56 77 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 4 58 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 57 - C - - MR 90 89 3 92 3 1 5 56 77 -8.297 -0.019 -6.614 -1.591 1.581 -2.410 -1.036 D 91 89 3 92 3 0 0 55 76 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 4 57 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 56 - U - - MR 93 92 3 95 3 1 4 55 76 -8.297 -0.019 -6.614 -1.372 -1.388 -2.099 1.584 D 94 92 3 95 3 0 0 54 75 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 3 56 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 55 - C - - MR 96 95 3 98 3 1 4 54 75 -8.297 -0.019 -6.614 -1.591 1.581 -2.410 -1.036 D 97 95 3 98 3 0 0 53 74 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 3 55 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 54 - A - - MR 99 98 3 101 5 1 4 53 74 -7.039 -0.041 -6.855 -7.067 -7.959 1.691 -2.247 -1.891 -1.777 D 100 98 3 101 5 0 0 52 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 2 54 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 53 G C - - MP 102 101 3 106 6 2 5 52 73 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 103 101 3 106 6 1 1 51 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 51 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 48 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 52 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 52 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 52 U A - - MP 108 107 6 112 6 2 4 50 71 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.063 -3.884 -3.915 -0.188 -2.885 -4.491 1.441 -3.571 -3.921 0.085 -4.301 -1.787 3.264 -4.219 -0.564 -2.758 ML 109 107 6 112 6 1 1 49 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 49 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 46 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 50 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 50 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 51 G C - - MP 114 113 6 118 6 2 4 48 69 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 115 113 6 118 6 1 1 47 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 47 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 45 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 48 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 48 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 50 u g - - MP 120 119 6 124 4 2 2 46 67 -6.881 -7.088 -0.056 -5.502 -3.966 -3.881 -3.697 -0.228 -2.494 -4.142 1.789 -3.255 -3.736 -0.014 -4.041 -1.886 0.959 -4.063 2.922 -2.613 ML 121 119 6 124 4 1 1 46 68 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 46 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 45 66 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 48 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 47 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 21 - C - - - ML 126 125 6 128 3 1 1 44 65 -7.902 -0.022 -6.556 -1.591 1.581 -2.410 -1.036 D 127 125 6 128 3 0 0 43 64 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 46 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - u - - - ML 129 128 3 131 3 1 1 43 64 -7.902 -0.022 -6.556 -0.656 0.434 -1.428 0.716 D 130 128 3 131 3 0 0 42 63 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 45 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - U - - - ML 132 131 3 134 3 1 1 42 63 -8.297 -0.019 -6.614 -1.372 -1.388 -2.099 1.584 D 133 131 3 134 3 0 0 41 62 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 43 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 49 - U - - MR 135 134 3 137 3 1 1 41 62 -8.297 -0.019 -6.614 -1.372 -1.388 -2.099 1.584 D 136 134 3 137 3 0 0 39 60 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 42 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 48 - c - - MR 138 137 3 140 3 1 1 40 61 -8.297 -0.199 -2.993 -0.789 0.937 -1.589 0.232 D 139 137 3 140 3 0 0 38 60 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 41 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 47 - u - - MR 141 140 3 143 3 1 1 39 60 -8.120 -0.022 -6.438 -0.540 0.019 -1.277 0.915 D 142 140 3 143 3 0 0 38 59 -7.334 -0.609 -1.564 IR 143 143 3 143 3 1 1 40 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 46 - G - - MR 144 143 3 146 3 1 1 38 59 -8.297 -0.019 -6.614 -1.448 -2.647 1.691 -2.033 D 145 143 3 146 3 0 0 36 57 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 39 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 45 - U - - MR 147 146 3 149 3 1 1 37 58 -8.297 -0.019 -6.614 -1.372 -1.388 -2.099 1.584 D 148 146 3 149 3 0 0 35 57 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 38 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 44 - u - - MR 150 149 3 152 5 1 1 36 57 -7.039 -0.041 -6.855 -7.067 -7.959 -0.656 0.410 -1.426 0.735 D 151 149 3 152 5 0 0 35 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 152 152 3 152 5 1 1 36 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 24 43 G C - - MP 153 152 3 157 6 2 2 35 56 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 154 152 3 157 6 1 1 34 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 33 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 31 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 35 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 34 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 25 42 G C - - MP 159 158 6 163 6 2 2 33 54 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -4.624 -3.038 -4.713 0.278 -5.067 -4.647 -0.460 -4.947 -4.250 3.609 -4.595 -0.733 -0.849 -4.390 -2.491 -3.592 ML 160 158 6 163 6 1 1 32 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 32 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 29 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 33 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 32 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 26 41 c g - - MP 165 164 6 169 6 2 2 31 52 -9.082 -9.022 -0.021 -7.798 -8.078 -8.473 -2.856 -2.471 -2.953 1.472 -2.685 -3.769 2.111 -3.047 -2.966 1.587 -3.462 0.605 1.160 -3.089 -0.422 -1.925 ML 166 164 6 169 6 1 1 30 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 30 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 27 40 C G - - MP 171 170 6 175 4 2 2 29 50 -6.881 -7.088 -0.056 -5.502 -4.427 -4.322 -4.137 -0.565 -2.883 -4.565 3.511 -3.680 -4.183 -0.307 -4.456 -2.267 0.644 -4.504 -0.586 -3.027 ML 172 170 6 175 4 1 1 29 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 29 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 28 49 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 30 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 30 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 28 - u - - - ML 177 176 6 179 3 1 1 27 48 -7.902 -0.022 -6.556 -0.292 0.267 -0.410 0.296 D 178 176 6 179 3 0 0 25 46 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 29 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 29 - c - - - ML 180 179 3 182 3 1 1 26 47 -7.902 -0.022 -6.556 0.055 0.793 -1.276 -0.293 D 181 179 3 182 3 0 0 24 45 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 30 - A - - - ML 183 182 3 185 3 1 1 25 46 -2.939 -0.685 -2.013 1.126 -1.393 -0.190 -0.838 D 184 182 3 185 3 0 0 21 42 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 26 47 -1.267 -0.867 -4.785 0.000 0.000 0.000 0.000 [ MATL 47 ] 33 - u - - - ML 186 185 3 188 3 1 1 20 39 -7.512 -0.028 -6.166 -0.365 0.268 -1.095 0.633 D 187 185 3 188 3 0 0 18 37 -7.806 -3.319 -0.159 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 34 - U - - - ML 189 188 3 191 3 1 1 19 38 -7.512 -0.028 -6.166 -0.708 -0.856 -1.385 1.294 D 190 188 3 191 3 0 0 18 36 -7.806 -0.363 -2.198 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 35 - g - - - ML 192 191 3 194 3 1 1 18 36 -7.902 -0.022 -6.556 -0.483 -1.219 0.945 -0.105 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 36 - C - - - ML 195 194 3 197 3 1 1 16 35 -7.902 -0.022 -6.556 -1.591 1.581 -2.410 -1.036 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 37 - g - - - ML 198 197 3 200 3 1 1 15 33 -7.902 -0.022 -6.556 0.187 -0.903 0.327 0.102 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 38 - g - - - ML 201 200 3 203 3 1 1 13 32 -7.902 -0.022 -6.556 -0.490 -1.230 0.958 -0.122 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 39 - U - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -1.372 -1.388 -2.099 1.584 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB9Cs2H1 ACC RF01554 DESC Trypanosomatid snoRNA TB9Cs2H1 LENG 68 MAXL 153 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 16 18:32:46 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01554/CM NSEQ 4 EFFN 2.324219 CKSUM 4049155147 STATS LOCAL MSV -8.6498 0.71908 STATS LOCAL VITERBI -9.0411 0.71908 STATS LOCAL FORWARD -3.2439 0.71908 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.64959 1.30558 1.25785 1.37598 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 0.00000 * 1 2.57629 3.22724 0.17189 3.16513 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 2 2.57868 3.23006 0.17135 3.16905 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 3 1.63343 0.92296 1.74617 1.45689 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 4 3.18655 0.24250 2.96082 2.10170 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 5 3.18604 0.24256 2.96058 2.10161 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 6 0.34556 2.76138 1.82446 2.69316 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 7 3.18461 0.24272 2.95990 2.10136 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 8 0.15632 3.23115 2.95602 2.93417 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 9 2.60231 2.56758 3.11941 0.21692 9 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 10 2.60231 2.56758 3.11941 0.21692 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 11 2.69194 3.56866 0.14971 3.14418 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 12 2.69194 3.56866 0.14971 3.14418 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 13 0.15632 3.23115 2.95602 2.93417 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 14 2.69194 3.56866 0.14971 3.14418 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 15 2.60231 2.56758 3.11941 0.21692 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 16 2.60231 2.56758 3.11941 0.21692 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 17 2.57811 3.22938 0.17148 3.16811 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 18 2.95983 1.89594 2.70924 0.31278 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 19 2.58011 3.23175 0.17102 3.17140 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 20 2.93307 1.57245 2.72282 0.39521 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 21 2.83645 0.20339 3.41241 2.38118 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 22 1.95725 1.03145 2.50633 0.86584 22 u - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 23 2.60231 2.56758 3.11941 0.21692 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 24 2.57305 3.22342 0.17263 3.15982 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 25 2.57678 3.22782 0.17178 3.16594 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 26 1.58322 1.18896 1.24391 1.60002 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 27 3.18490 0.24269 2.96004 2.10141 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 28 1.65061 1.15441 1.66649 1.19102 28 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 29 1.37868 0.75167 2.40345 1.68144 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 30 0.55373 2.48565 1.51067 2.11062 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.61801 1.77963 1.23003 0.77512 0.61739 1.09861 0.40547 31 1.71049 1.15880 2.22726 0.92247 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05549 3.61240 3.61240 1.46634 0.26236 2.82675 0.06103 32 2.03558 2.10410 2.51916 0.40510 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05549 3.61240 3.61240 1.46634 0.26236 0.12603 2.13360 33 1.83400 2.35453 0.64927 1.50122 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 34 2.83645 0.20339 3.41241 2.38118 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 35 1.26954 2.07446 1.11418 1.32716 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 36 1.84005 2.36362 0.63993 1.51512 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 37 2.60231 2.56758 3.11941 0.21692 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 38 2.37931 3.12881 0.20939 2.94632 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 39 1.82846 1.64056 1.07461 1.19061 41 g - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 40 3.38093 0.20180 3.06900 2.28023 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 41 3.38581 0.20136 3.07113 2.28115 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 42 1.95665 1.04983 2.50457 0.85106 44 u - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 43 2.60231 2.56758 3.11941 0.21692 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 44 2.69194 3.56866 0.14971 3.14418 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.20542 3.93075 1.79536 1.46634 0.26236 1.09861 0.40547 45 1.85852 1.35602 2.37934 0.70562 47 u - - - 1.38629 1.38629 1.38629 1.38629 0.04708 3.77242 3.77242 1.46634 0.26236 0.21220 1.65444 46 2.07928 0.65681 2.65231 1.25180 48 C - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 47 2.60231 2.56758 3.11941 0.21692 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 48 2.11417 2.90087 0.28038 2.67666 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 49 3.38055 0.20184 3.06883 2.28015 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 50 0.35425 2.89635 1.73315 2.71286 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 51 3.39066 0.20093 3.07324 2.28206 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 52 0.15632 3.23115 2.95602 2.93417 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 53 2.83645 0.20339 3.41241 2.38118 55 C - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 54 2.60231 2.56758 3.11941 0.21692 56 U - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 55 2.83645 0.20339 3.41241 2.38118 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 56 0.54077 2.49277 1.53727 2.11984 58 A - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 57 2.83645 0.20339 3.41241 2.38118 59 C - - - 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 58 2.37813 3.12722 0.20973 2.94439 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 59 2.91974 2.11753 2.57341 0.28842 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 60 2.37910 3.12854 0.20944 2.94599 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 61 2.37979 3.12947 0.20924 2.94712 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 62 1.68871 1.91686 0.96147 1.25231 64 g - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 63 3.38343 0.20158 3.07009 2.28070 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 64 3.38892 0.20109 3.07248 2.28174 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 65 0.89466 2.44737 0.98060 2.04292 67 a - - : 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 66 0.15632 3.23115 2.95602 2.93417 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 67 2.69194 3.56866 0.14971 3.14418 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.04005 3.93075 3.93075 1.46634 0.26236 1.09861 0.40547 68 0.15632 3.23115 2.95602 2.93417 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.02023 3.91093 * 1.46634 0.26236 0.00000 * //