INFERNAL1/a [1.1.4 | Dec 2020] NAME TB9Cs1H3 ACC RF01553 DESC Trypanosomatid snoRNA TB9Cs1H3 STATES 199 NODES 56 CLEN 65 W 82 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:27:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.416992 CKSUM 2090961366 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.80 NC 32.20 EFP7GF -8.0357 0.72220 ECMLC 0.63770 -6.55088 2.55961 1600000 400260 0.002998 ECMGC 0.45412 -16.56476 -4.23615 1600000 108022 0.003703 ECMLI 0.65331 -4.67723 3.58197 1600000 264584 0.004535 ECMGI 0.46846 -12.58493 -1.23503 1600000 81502 0.004908 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -7.135 -7.342 -0.047 -5.756 IL 1 1 2 1 4 1 21 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 21 82 102 -8.139 -0.018 -6.793 -1.815 -1.754 -2.563 1.700 D 4 2 3 5 3 0 15 80 100 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 20 81 100 -8.139 -0.018 -6.793 -1.950 -3.223 1.795 -2.611 D 7 5 3 8 3 0 15 79 99 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 19 80 99 -8.139 -0.018 -6.793 0.391 0.608 -1.310 -0.393 D 10 8 3 11 3 0 14 78 98 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 1 18 79 98 -8.139 -0.018 -6.793 -0.503 0.585 0.052 -0.400 D 13 11 3 14 3 0 13 77 97 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 18 78 97 -8.518 -0.017 -6.836 1.785 -2.726 -2.323 -2.304 D 16 14 3 17 3 0 12 76 96 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 16 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 67 - A - - MR 18 17 3 20 3 1 17 77 96 -8.518 -0.017 -6.836 1.785 -2.726 -2.323 -2.304 D 19 17 3 20 3 0 10 75 95 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 66 - G - - MR 21 20 3 23 3 1 17 76 95 -8.518 -0.017 -6.836 -1.950 -3.223 1.795 -2.611 D 22 20 3 23 3 0 10 74 94 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 65 - A - - MR 24 23 3 26 3 1 16 75 94 -8.518 -0.017 -6.836 1.785 -2.726 -2.323 -2.304 D 25 23 3 26 3 0 9 73 93 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 64 - G - - MR 27 26 3 29 5 1 16 74 93 -7.247 -0.035 -7.062 -7.274 -8.166 -1.950 -3.223 1.795 -2.611 D 28 26 3 29 5 0 8 72 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 12 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 63 A U - - MP 30 29 3 34 6 2 17 73 92 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.116 -3.068 -4.106 3.507 -4.612 -5.710 -0.290 -4.126 -3.989 0.728 -4.552 -0.495 -0.706 -4.840 -2.229 -2.924 ML 31 29 3 34 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 9 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 5 69 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 11 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 12 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 62 C G - - MP 36 35 6 40 6 2 16 71 90 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.934 -4.873 -4.558 -1.074 -3.197 -4.919 3.654 -4.045 -4.622 -0.883 -4.839 -2.828 0.275 -4.977 -0.915 -3.450 ML 37 35 6 40 6 1 9 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 9 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 4 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 11 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 61 G C - - MP 42 41 6 46 6 2 15 69 88 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.009 -2.709 -4.037 0.796 -4.793 -4.650 -0.214 -4.390 -3.940 3.181 -4.349 1.429 -0.488 -4.045 -2.190 -2.917 ML 43 41 6 46 6 1 9 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 8 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 4 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 10 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 11 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 60 C G - - MP 48 47 6 52 6 2 14 67 86 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.934 -4.873 -4.558 -1.074 -3.197 -4.919 3.654 -4.045 -4.622 -0.883 -4.839 -2.828 0.275 -4.977 -0.915 -3.450 ML 49 47 6 52 6 1 8 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 8 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 4 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 10 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 10 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 59 g c - - MP 54 53 6 58 6 2 13 65 84 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -3.518 -2.467 -3.538 1.866 -4.159 -4.416 0.250 -3.892 -3.591 2.692 -4.036 1.304 -0.014 -3.659 -1.678 -2.454 ML 55 53 6 58 6 1 8 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 7 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 3 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 9 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 9 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 58 C G - - MP 60 59 6 64 6 2 11 63 82 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.934 -4.873 -4.558 -1.074 -3.197 -4.919 3.654 -4.045 -4.622 -0.883 -4.839 -2.828 0.275 -4.977 -0.915 -3.450 ML 61 59 6 64 6 1 7 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 5 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 3 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 8 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 8 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 57 U G - - MP 66 65 6 70 4 2 9 61 80 -7.135 -7.342 -0.047 -5.756 -4.454 -4.388 -4.073 -0.689 -2.725 -4.439 1.569 -3.529 -4.117 -0.557 -4.371 -2.379 0.672 -4.503 3.207 -2.970 ML 67 65 6 70 4 1 6 61 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 4 60 80 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 3 59 79 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 8 62 82 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 7 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 72 71 6 74 3 1 8 58 78 -8.139 -0.018 -6.793 1.785 -2.726 -2.323 -2.304 D 73 71 6 74 3 0 2 57 76 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - U - - - ML 75 74 3 77 3 1 7 57 77 -8.139 -0.018 -6.793 -1.815 -1.754 -2.563 1.700 D 76 74 3 77 3 0 1 56 75 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 6 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - U - - - ML 78 77 3 80 3 1 6 56 76 -2.176 -0.378 -6.793 -1.815 -1.754 -2.563 1.700 D 79 77 3 80 3 0 1 54 73 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 56 76 -2.093 -0.455 -4.793 0.000 0.000 0.000 0.000 [ MATL 20 ] 17 - G - - - ML 81 80 3 83 3 1 6 54 74 -8.139 -0.018 -6.793 -1.950 -3.223 1.795 -2.611 D 82 80 3 83 3 0 0 53 73 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 18 - C - - - ML 84 83 3 86 3 1 5 53 73 -8.139 -0.018 -6.793 -2.170 1.722 -3.001 -1.498 D 85 83 3 86 3 0 0 52 72 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 4 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - - - ML 87 86 3 89 3 1 4 52 72 -8.518 -0.017 -6.836 -1.815 -1.754 -2.563 1.700 D 88 86 3 89 3 0 0 51 70 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 3 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 56 - A - - MR 90 89 3 92 3 1 4 51 71 -8.518 -0.017 -6.836 1.785 -2.726 -2.323 -2.304 D 91 89 3 92 3 0 0 50 69 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 2 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 55 - G - - MR 93 92 3 95 3 1 3 50 70 -8.518 -0.017 -6.836 -1.950 -3.223 1.795 -2.611 D 94 92 3 95 3 0 0 49 68 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 2 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 54 - U - - MR 96 95 3 98 3 1 3 49 69 -8.518 -0.017 -6.836 -1.815 -1.754 -2.563 1.700 D 97 95 3 98 3 0 0 48 67 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 53 - C - - MR 99 98 3 101 3 1 2 48 68 -8.518 -0.017 -6.836 -2.170 1.722 -3.001 -1.498 D 100 98 3 101 3 0 0 47 66 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 52 - C - - MR 102 101 3 104 3 1 2 47 67 -8.518 -0.017 -6.836 -2.170 1.722 -3.001 -1.498 D 103 101 3 104 3 0 0 46 65 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 48 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 51 - U - - MR 105 104 3 107 3 1 2 46 66 -8.518 -0.017 -6.836 -1.815 -1.754 -2.563 1.700 D 106 104 3 107 3 0 0 45 64 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 50 - u - - MR 108 107 3 110 5 1 1 45 65 -7.247 -0.035 -7.062 -7.274 -8.166 0.120 -0.950 -1.284 0.989 D 109 107 3 110 5 0 0 44 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 49 C G - - MP 111 110 3 115 6 2 2 44 64 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -3.996 -3.990 -3.798 -0.249 -2.618 -4.290 3.028 -3.375 -3.821 -0.060 -4.167 -2.022 0.981 -4.101 1.574 -2.685 ML 112 110 3 115 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 48 C G - - MP 117 116 6 121 6 2 2 42 62 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.934 -4.873 -4.558 -1.074 -3.197 -4.919 3.654 -4.045 -4.622 -0.883 -4.839 -2.828 0.275 -4.977 -0.915 -3.450 ML 118 116 6 121 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 47 C G - - MP 123 122 6 127 6 2 2 40 60 -9.182 -9.121 -0.020 -7.898 -8.177 -8.572 -4.934 -4.873 -4.558 -1.074 -3.197 -4.919 3.654 -4.045 -4.622 -0.883 -4.839 -2.828 0.275 -4.977 -0.915 -3.450 ML 124 122 6 127 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 46 G C - - MP 129 128 6 133 4 2 2 38 58 -7.135 -7.342 -0.047 -5.756 -3.815 -2.639 -3.820 1.898 -4.418 -4.537 0.110 -4.162 -3.817 3.072 -4.237 -0.252 -0.188 -3.867 -1.865 -2.717 ML 130 128 6 133 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 38 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 37 57 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 40 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 24 - c - - - ML 135 134 6 137 3 1 1 36 55 -8.139 -0.018 -6.793 0.391 0.608 -1.310 -0.393 D 136 134 6 137 3 0 0 35 54 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 25 - u - - - ML 138 137 3 140 3 1 1 35 54 -8.139 -0.018 -6.793 -0.867 0.245 -1.645 0.961 D 139 137 3 140 3 0 0 34 53 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 26 - G - - - ML 141 140 3 143 3 1 1 34 53 -8.139 -0.018 -6.793 -1.950 -3.223 1.795 -2.611 D 142 140 3 143 3 0 0 33 52 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 27 - c - - - ML 144 143 3 146 3 1 1 33 52 -8.139 -0.378 -2.140 -0.503 0.585 0.052 -0.400 D 145 143 3 146 3 0 0 32 51 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - u - - - ML 147 146 3 149 3 1 1 32 51 -7.784 -0.023 -6.439 -0.279 -0.847 0.282 0.489 D 148 146 3 149 3 0 0 31 50 -7.885 -0.341 -2.276 IL 149 149 3 149 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - G - - - ML 150 149 3 152 3 1 1 31 50 -8.139 -0.018 -6.793 -1.950 -3.223 1.795 -2.611 D 151 149 3 152 3 0 0 29 49 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - c - - - ML 153 152 3 155 3 1 1 29 48 -8.139 -0.018 -6.793 -0.895 0.787 -1.708 0.517 D 154 152 3 155 3 0 0 28 47 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 31 - g - - - ML 156 155 3 158 3 1 1 28 47 -8.139 -0.018 -6.793 0.475 -1.630 0.850 -1.045 D 157 155 3 158 3 0 0 27 46 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 32 - U - - - ML 159 158 3 161 3 1 1 27 46 -8.139 -0.018 -6.793 -1.815 -1.754 -2.563 1.700 D 160 158 3 161 3 0 0 26 45 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 33 - G - - - ML 162 161 3 164 3 1 1 26 45 -8.139 -0.018 -6.793 -1.950 -3.223 1.795 -2.611 D 163 161 3 164 3 0 0 25 44 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 34 - a - - - ML 165 164 3 167 3 1 1 25 44 -8.139 -0.018 -6.793 0.359 -0.020 -1.083 0.333 D 166 164 3 167 3 0 0 24 43 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - C - - - ML 168 167 3 170 3 1 1 24 43 -8.139 -0.018 -6.793 -2.170 1.722 -3.001 -1.498 D 169 167 3 170 3 0 0 23 42 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - g - - - ML 171 170 3 173 3 1 1 23 41 -8.139 -0.018 -6.793 -0.512 -1.167 0.727 0.260 D 172 170 3 173 3 0 0 22 41 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - a - - - ML 174 173 3 176 3 1 1 22 40 -8.139 -0.018 -6.793 0.970 -1.546 0.252 -0.977 D 175 173 3 176 3 0 0 21 40 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - u - - - ML 177 176 3 179 3 1 1 20 39 -8.139 -0.018 -6.793 -0.867 0.245 -1.645 0.961 D 178 176 3 179 3 0 0 20 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - g - - - ML 180 179 3 182 3 1 1 19 38 -8.139 -0.018 -6.793 -0.512 -1.167 0.727 0.260 D 181 179 3 182 3 0 0 19 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - u - - - ML 183 182 3 185 3 1 1 18 36 -8.139 -0.018 -6.793 0.194 0.001 -1.114 0.479 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 41 - g - - - ML 186 185 3 188 3 1 1 16 35 -8.139 -0.018 -6.793 -0.474 -0.083 0.724 -0.547 D 187 185 3 188 3 0 0 16 35 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 42 - C - - - ML 189 188 3 191 3 1 1 15 33 -2.176 -0.378 -6.793 -2.170 1.722 -3.001 -1.498 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 15 33 -2.093 -0.455 -4.793 0.000 0.000 0.000 0.000 [ MATL 53 ] 44 - a - - - ML 192 191 3 194 3 1 1 13 31 -8.139 -0.018 -6.793 0.895 0.008 -1.219 -0.504 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 45 - g - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -0.512 -1.167 0.727 0.260 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME TB9Cs1H3 ACC RF01553 DESC Trypanosomatid snoRNA TB9Cs1H3 LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:27:31 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.475586 CKSUM 2090961366 STATS LOCAL MSV -8.6151 0.72220 STATS LOCAL VITERBI -9.2965 0.72220 STATS LOCAL FORWARD -3.3926 0.72220 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.61021 1.38114 1.18871 1.40957 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.67010 2.62387 3.18988 0.20205 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.76586 3.65257 0.13752 3.22788 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 1.11404 0.95911 2.30509 1.66715 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 1.74464 0.97440 1.34697 1.67212 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.14458 3.30327 3.02111 3.01376 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.31665 2.84986 1.88781 2.77801 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.26184 0.22494 3.04418 2.15867 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.06741 2.78501 0.30011 2.64475 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.26148 0.22497 3.04401 2.15861 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 1.38095 2.46684 0.56989 2.32057 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.25946 0.22518 3.04303 2.15825 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.99624 1.60794 2.79612 0.37298 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.14458 3.30327 3.02111 3.01376 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.67010 2.62387 3.18988 0.20205 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.67010 2.62387 3.18988 0.20205 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.30242 1.41990 3.95124 0.15215 1.95801 1.09861 0.40547 16 2.76586 3.65257 0.13752 3.22788 17 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.92395 0.18641 3.50027 2.45160 18 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.67010 2.62387 3.18988 0.20205 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.71152 0.63807 2.48907 1.13238 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.26107 0.22501 3.04381 2.15853 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.26167 0.22495 3.04410 2.15864 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 1.37246 2.57054 0.53849 2.44881 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 1.11404 0.95911 2.30509 1.66715 24 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 1.99908 1.21356 2.53977 0.71638 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.76586 3.65257 0.13752 3.22788 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 1.74464 0.97440 1.34697 1.67212 27 c - - _ 1.38629 1.38629 1.38629 1.38629 0.30242 3.95124 1.41990 1.46634 0.26236 1.09861 0.40547 27 1.58493 1.97899 1.18686 1.04511 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05073 3.69956 3.69956 1.46634 0.26236 0.14765 1.98584 28 2.76586 3.65257 0.13752 3.22788 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.01913 0.83473 2.58432 1.02781 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 1.05569 2.52996 0.79192 2.12518 31 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.67010 2.62387 3.18988 0.20205 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.76586 3.65257 0.13752 3.22788 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 1.13643 1.39818 2.14293 1.15620 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.92395 0.18641 3.50027 2.45160 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 1.74982 2.20478 0.87579 1.20602 36 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.70990 2.47096 1.20867 2.07778 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 1.99908 1.21356 2.53977 0.71638 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 1.74982 2.20478 0.87579 1.20602 39 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 1.25185 1.38356 2.16464 1.05398 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 1.72450 1.44200 0.87716 1.77598 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.92395 0.18641 3.50027 2.45160 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.30242 1.41990 3.95124 0.15215 1.95801 1.09861 0.40547 42 0.76154 1.37792 2.24121 1.74512 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 1.74982 2.20478 0.87579 1.20602 45 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.68631 0.61432 2.38486 1.20813 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.43855 3.21398 0.19370 3.02388 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 2.43996 3.21594 0.19332 3.02622 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 1.95561 2.65580 0.35006 2.48129 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 1.30416 2.05302 2.28542 0.69611 50 u - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.67010 2.62387 3.18988 0.20205 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.92395 0.18641 3.50027 2.45160 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 2.92395 0.18641 3.50027 2.45160 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 2.67010 2.62387 3.18988 0.20205 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 2.76586 3.65257 0.13752 3.22788 55 G - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 0.14458 3.30327 3.02111 3.01376 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 2.15684 2.97439 0.26327 2.73809 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.43611 3.21058 0.19437 3.01983 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 2.55836 0.86439 2.27534 0.92005 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 2.43759 3.21264 0.19396 3.02228 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 2.87821 0.54283 2.59878 1.24376 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 2.44010 3.21614 0.19328 3.02645 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 61 3.01599 2.19088 2.66590 0.26182 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 62 2.76586 3.65257 0.13752 3.22788 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 63 0.14458 3.30327 3.02111 3.01376 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 64 2.76586 3.65257 0.13752 3.22788 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 65 0.14458 3.30327 3.02111 3.01376 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //