# STOCKHOLM 1.0
#=GF ID TB9Cs1H2
#=GF AC RF01552
#=GF DE Trypanosomatid snoRNA TB9Cs1H2
#=GF AU Osuch I
#=GF GA 35.0
#=GF NC 34.5
#=GF TC 35.1
#=GF SE Predicted; WAR;
#=GF SS Predicted; WAR;
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.24 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 15840815
#=GF RT A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in
#=GF RT Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA
#=GF RT modification.
#=GF RA Liang XH, Uliel S, Hury A, Barth S, Doniger T, Unger R, Michaeli S
#=GF RL RNA. 2005;11:619-645.
#=GF WK Trypanosome_H/ACA_box_snoRNAs
#=GF SQ 5

AAHK01002462.1/4028-3959 CACGGGGCAAUCCGAGGUGCCCGUGCGCUGU---------------GCUCUGCCGCGGUGGUGCCUUCUGGUAGUCCCGGAGAUG-
FR796458.1/633802-633887 AACGGGGCAAUCCGAGGUGCACGUGGCUUGCGCCCGCUCGCGGGACUCUGUGCCGUGGUGCGACCUUCUGGUAGCGCCGGAGAGCC
FN554972.1/374434-374365 CACGGGGCAAUCCGAGGUCAGUGAGC-----UUCA----------CUUCGUGCCGCAUGA-UGCCUUCUGGUGGCUCCGGAGAAGC
FR798998.1/764012-763927 AACGGGGCAAUCCGAGGUGCACGUGGCUUGCGCCCGCUCGCGGGGCUCGGUGCCGUGGUGCGACCUUCUGGUAGCACCGGAGAGCC
FR796422.1/673006-673091 AACGGGGCAAUCCGAGGUGCACGUGGCUUGCGCCCGCUCGCGGGACUGUGUGCCGUGGUGCGACCUUCUGGUAGCGCCGGAGAGCC
#=GC SS_cons             ::<<<-<<------<<<______________________________________________>>>------->>->>>:::::::
#=GC RF                  aACGGGGCAAUCCGAGGUgcacGUGgcuUGcgcCcGCUCGCGGGaCUcuGUGCCGuGGuGcgaCCUUCUGGUAGCuCCGGAGAgcC
//
