INFERNAL1/a [1.1.5 | Sep 2023] NAME TB8Cs2H1 ACC RF01549 DESC Trypanosomatid snoRNA TB8Cs2H1 STATES 199 NODES 49 CLEN 65 W 79 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 11:39:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01549/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 3.641602 CKSUM 10972746 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.30 NC 38.30 EFP7GF -11.2221 0.71910 ECMLC 0.59064 -7.53919 2.56936 1600000 470042 0.002553 ECMGC 0.41982 -17.50771 -3.74901 1600000 129013 0.003100 ECMLI 0.60577 -5.95161 3.56284 1600000 382172 0.003140 ECMGI 0.44727 -13.19430 -1.06553 1600000 90790 0.004406 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 99 -7.520 -7.727 -0.036 -6.141 IL 1 1 2 1 4 1 17 84 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 83 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 79 99 -8.863 -0.013 -7.180 1.396 -2.074 -0.324 -1.590 D 4 2 3 5 3 0 10 78 97 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 15 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 67 - A - - MR 6 5 3 8 3 1 16 78 98 -8.863 -0.013 -7.180 1.874 -3.448 -2.980 -3.101 D 7 5 3 8 3 0 8 77 96 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 66 - G - - MR 9 8 3 11 3 1 15 77 97 -8.863 -0.013 -7.180 -2.661 -4.017 1.882 -3.389 D 10 8 3 11 3 0 7 76 95 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - A - - MR 12 11 3 14 3 1 14 76 96 -8.863 -0.013 -7.180 1.874 -3.448 -2.980 -3.101 D 13 11 3 14 3 0 6 75 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 64 - A - - MR 15 14 3 17 5 1 14 75 95 -7.573 -0.028 -7.388 -7.600 -8.492 1.175 -1.960 0.157 -1.432 D 16 14 3 17 5 0 6 74 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 10 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 63 C G - - MP 18 17 3 22 6 2 15 74 94 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -5.749 -5.755 -5.221 -1.924 -3.729 -5.473 3.799 -4.662 -5.339 -1.806 -5.442 -3.750 -0.371 -5.734 -1.494 -4.149 ML 19 17 3 22 6 1 8 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 7 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 4 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 9 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 9 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 62 C G - - MP 24 23 6 28 6 2 14 72 92 -3.765 -9.292 -0.127 -8.069 -8.349 -8.744 -4.040 -4.059 0.762 -0.497 -2.978 -4.515 3.303 -3.681 -3.979 -0.358 -4.363 -2.192 0.543 -4.218 -0.734 -2.915 ML 25 23 6 28 6 1 7 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 7 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 4 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 10 71 91 -3.457 -3.720 -0.364 -5.376 -6.152 -5.812 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 61 U A - - MP 30 29 6 34 6 2 13 70 89 -9.353 -4.144 -0.100 -8.069 -8.349 -8.744 -5.621 -5.463 -5.289 -1.689 -3.976 -5.717 0.358 -4.753 -5.286 -1.589 -5.589 -3.327 3.737 -5.696 -1.619 -3.901 ML 31 29 6 34 6 1 7 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 7 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 3 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 9 69 88 -2.882 -0.339 -6.393 -4.561 -5.666 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 59 c g - - MP 36 35 6 40 6 2 12 68 87 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -2.289 -2.306 -2.468 0.808 -2.220 -3.256 2.216 -2.642 -0.317 0.867 -3.005 0.301 1.255 -2.599 0.742 -1.597 ML 37 35 6 40 6 1 6 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 6 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 3 64 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 8 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 58 C G - - MP 42 41 6 46 6 2 11 66 85 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -5.749 -5.755 -5.221 -1.924 -3.729 -5.473 3.799 -4.662 -5.339 -1.806 -5.442 -3.750 -0.371 -5.734 -1.494 -4.149 ML 43 41 6 46 6 1 6 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 6 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 3 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 57 g u - - MP 48 47 6 52 6 2 9 64 83 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -4.134 -2.869 -4.308 2.347 -5.600 -6.222 -1.168 -4.393 -3.964 0.729 -4.547 2.946 -1.335 -5.120 -3.066 -2.985 ML 49 47 6 52 6 1 6 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 2 62 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 6 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 6 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 56 C G - - MP 54 53 6 58 4 2 7 62 81 -7.520 -7.727 -0.036 -6.141 -5.749 -5.755 -5.221 -1.924 -3.729 -5.473 3.799 -4.662 -5.339 -1.806 -5.442 -3.750 -0.371 -5.734 -1.494 -4.149 ML 55 53 6 58 4 1 5 63 82 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 4 1 3 62 82 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 57 53 6 58 4 0 2 61 81 -4.568 -4.250 -2.265 -0.520 IL 58 58 5 58 4 1 6 64 83 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 59 59 6 59 3 1 5 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 10 - U - - - ML 60 59 6 62 3 1 6 60 79 -8.502 -0.014 -7.156 -0.259 -1.304 -1.747 1.299 D 61 59 6 62 3 0 2 58 78 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 5 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 11 - U - - - ML 63 62 3 65 3 1 5 59 78 -8.502 -0.014 -7.156 -2.508 -2.335 -3.278 1.817 D 64 62 3 65 3 0 1 57 77 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 5 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - C - - - ML 66 65 3 68 3 1 4 57 76 -8.502 -0.014 -7.156 -3.032 1.845 -3.836 -2.208 D 67 65 3 68 3 0 1 56 76 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 4 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - G - - - ML 69 68 3 71 3 1 3 56 75 -8.502 -0.239 -2.736 -2.661 -4.017 1.882 -3.389 D 70 68 3 71 3 0 0 55 74 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - C - - - ML 72 71 3 74 3 1 4 55 74 -8.651 -0.015 -6.969 -2.513 1.780 -3.341 -1.776 D 73 71 3 74 3 0 0 54 73 -6.737 -0.293 -2.520 IL 74 74 3 74 3 1 2 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 55 - G - - MR 75 74 3 77 3 1 3 54 73 -8.863 -0.013 -7.180 -2.661 -4.017 1.882 -3.389 D 76 74 3 77 3 0 0 53 72 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 2 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 54 - U - - MR 78 77 3 80 3 1 3 53 72 -8.863 -0.013 -7.180 -1.486 -0.513 -2.249 1.450 D 79 77 3 80 3 0 0 52 71 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 53 - A - - MR 81 80 3 83 3 1 3 52 71 -8.863 -0.013 -7.180 1.396 -2.074 -0.324 -1.590 D 82 80 3 83 3 0 0 51 70 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 52 - G - - MR 84 83 3 86 3 1 2 51 70 -8.863 -0.013 -7.180 -0.436 -2.500 1.499 -1.955 D 85 83 3 86 3 0 0 50 69 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 51 - G - - MR 87 86 3 89 3 1 2 50 69 -8.863 -0.013 -7.180 -2.661 -4.017 1.882 -3.389 D 88 86 3 89 3 0 0 49 68 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 50 - U - - MR 90 89 3 92 5 1 1 49 68 -7.573 -0.028 -7.388 -7.600 -8.492 -2.508 -2.335 -3.278 1.817 D 91 89 3 92 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 49 U A - - MP 93 92 3 97 6 2 2 48 67 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -4.314 -4.316 -4.127 -0.574 -2.960 -4.634 1.376 -3.712 -4.146 -0.416 -4.501 -2.345 3.119 -4.431 1.278 -3.004 ML 94 92 3 97 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 16 48 C G - - MP 99 98 6 103 6 2 2 46 65 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -5.749 -5.755 -5.221 -1.924 -3.729 -5.473 3.799 -4.662 -5.339 -1.806 -5.442 -3.750 -0.371 -5.734 -1.494 -4.149 ML 100 98 6 103 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 47 G C - - MP 105 104 6 109 6 2 2 44 63 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -4.736 -3.131 -4.771 0.275 -5.753 -4.932 -0.946 -5.196 -4.491 3.509 -4.836 0.893 -1.212 -4.526 -2.968 -3.650 ML 106 104 6 109 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 46 u a - - MP 111 110 6 115 6 2 2 42 61 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -3.232 -3.263 -3.272 0.113 -2.663 -3.981 1.393 -3.236 -3.312 0.278 -3.785 -1.501 2.701 1.325 -0.503 -2.331 ML 112 110 6 115 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 39 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 45 c g - - MP 117 116 6 121 6 2 2 40 59 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -2.822 -2.606 -2.972 0.677 -2.611 -3.723 2.445 -3.036 -2.940 0.944 -3.430 0.965 1.075 -3.108 -0.441 0.138 ML 118 116 6 121 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 20 44 g c - - MP 123 122 6 127 4 2 2 38 57 -7.397 -8.642 -0.286 -2.545 -2.438 -1.918 -2.681 0.915 -2.624 -3.237 1.189 -0.341 -2.576 1.760 -2.972 1.515 0.883 -2.715 0.419 -1.743 ML 124 122 6 127 4 1 1 38 57 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 38 56 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 35 54 -12.737 -14.007 -2.036 -0.404 IL 127 127 5 127 4 1 1 38 57 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 43 - u - - MR 129 128 6 131 3 1 1 36 55 -8.651 -0.203 -2.958 -0.457 0.090 -0.498 0.584 D 130 128 6 131 3 0 0 34 53 -7.778 -2.956 -0.207 IR 131 131 3 131 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 42 - a - - MR 132 131 3 134 3 1 1 36 55 -8.465 -0.017 -6.783 0.742 -1.501 0.530 -0.917 D 133 131 3 134 3 0 0 34 53 -8.336 -3.514 -0.137 IR 134 134 3 134 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 41 - u - - MR 135 134 3 137 5 1 1 35 54 -7.197 -0.036 -7.012 -7.224 -8.116 -0.803 0.384 -1.585 0.839 D 136 134 3 137 5 0 0 33 52 -6.730 -0.233 -4.356 -5.787 -3.782 IR 137 137 3 137 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 40 C G - - MP 138 137 3 142 6 2 2 34 53 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 0.427 -3.616 -3.610 -0.090 -2.806 -4.273 3.195 -3.439 -3.628 0.041 -4.069 -1.739 0.789 -3.847 -0.568 -2.592 ML 139 137 3 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 22 39 g c - - MP 144 143 6 148 6 2 2 32 51 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -3.386 1.351 -3.503 1.998 -4.073 -4.321 0.037 -3.824 -3.470 2.163 -3.894 0.998 -0.194 -3.636 -1.773 -2.449 ML 145 143 6 148 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 23 38 c g - - MP 150 149 6 154 6 2 2 30 49 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -3.476 -3.418 -3.499 1.329 -2.713 -4.228 2.624 -3.322 -3.492 0.468 -3.970 -1.425 1.092 -3.695 1.288 -2.413 ML 151 149 6 154 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 24 37 u a - - MP 156 155 6 160 6 2 2 28 47 -9.353 -9.292 -0.018 -8.069 -8.349 -8.744 -3.347 -3.360 0.751 0.054 -2.724 -4.085 1.366 -3.305 -3.405 0.163 -3.874 -1.548 2.929 -3.599 -0.546 -2.413 ML 157 155 6 160 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 25 36 C G - - MP 162 161 6 166 4 2 2 26 44 -7.520 -7.727 -0.036 -6.141 -4.040 -4.059 0.762 -0.497 -2.978 -4.515 3.303 -3.681 -3.979 -0.358 -4.363 -2.192 0.543 -4.218 -0.734 -2.915 ML 163 161 6 166 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - u - - - ML 168 167 6 170 3 1 1 23 42 -8.502 -0.014 -7.156 -0.493 -0.429 0.062 0.588 D 169 167 6 170 3 0 0 22 41 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 27 - c - - - ML 171 170 3 173 3 1 1 22 41 -8.502 -0.014 -7.156 -1.206 0.776 -2.050 0.689 D 172 170 3 173 3 0 0 21 40 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 28 - u - - - ML 174 173 3 176 3 1 1 21 39 -8.502 -0.531 -1.712 0.088 -0.103 -0.517 0.387 D 175 173 3 176 3 0 0 20 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 29 - u - - - ML 177 176 3 179 3 1 1 20 38 -7.991 -0.020 -6.645 -0.400 -0.905 0.043 0.747 D 178 176 3 179 3 0 0 18 36 -8.497 -4.010 -0.097 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - c - - - ML 180 179 3 182 3 1 1 19 37 -7.991 -0.020 -6.645 -0.482 0.729 -0.271 -0.326 D 181 179 3 182 3 0 0 17 35 -8.497 -4.010 -0.097 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 31 - u - - - ML 183 182 3 185 3 1 1 17 36 -7.991 -0.020 -6.645 -0.264 -0.116 -0.007 0.321 D 184 182 3 185 3 0 0 16 35 -8.497 -0.214 -2.888 IL 185 185 3 185 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 32 - C - - - ML 186 185 3 188 3 1 1 16 34 -8.502 -0.014 -7.156 -1.709 1.439 -2.595 -0.291 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 33 - a - - - ML 189 188 3 191 3 1 1 14 33 -8.502 -0.014 -7.156 0.622 -0.457 -0.474 0.019 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 34 - G - - - ML 192 191 3 194 3 1 1 13 31 -8.502 -0.014 -7.156 -0.494 -2.536 1.519 -1.992 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 35 - U - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 -1.404 -0.308 -2.174 1.374 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB8Cs2H1 ACC RF01549 DESC Trypanosomatid snoRNA TB8Cs2H1 LENG 65 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 11:39:40 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01549/CM NSEQ 6 EFFN 5.334961 CKSUM 10972746 STATS LOCAL MSV -7.8570 0.71910 STATS LOCAL VITERBI -8.8239 0.71910 STATS LOCAL FORWARD -3.4905 0.71910 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.58983 1.41016 1.16277 1.42997 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 0.00000 * 1 0.35695 3.17806 1.59512 2.88883 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 2 4.33462 0.07822 4.21906 3.04876 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 3 1.72818 0.39217 3.18761 2.24870 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.20181 1.77205 4.36103 0.14397 2.00930 1.09861 0.40547 4 4.27353 3.01126 4.17664 0.08177 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 5 2.08045 1.07057 1.37143 1.27809 6 c - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 6 4.27813 0.08017 4.18545 3.03744 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 7 1.07853 3.92816 0.48927 3.60619 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 8 4.28623 0.07988 4.19032 3.03910 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 9 1.62165 2.54320 2.87177 0.40464 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 10 3.60468 3.41589 4.14736 0.07888 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 11 4.02723 0.06421 4.52408 3.39564 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 12 3.67945 4.66225 0.05105 4.19396 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.20181 4.36103 1.77205 1.46634 0.26236 1.09861 0.40547 13 3.68963 0.08885 4.22892 3.09079 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.03076 4.18998 4.18998 1.46634 0.26236 0.13993 2.03576 14 3.38820 1.99397 3.20269 0.23645 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 15 4.31896 0.07875 4.20982 3.04568 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 16 2.70558 3.64271 0.13161 3.49652 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 17 3.02945 1.98067 2.84512 0.28030 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 18 2.31734 0.89381 1.37483 1.42924 19 c - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 19 2.01419 1.63781 0.76675 1.57191 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 20 1.85541 0.40075 2.90224 2.12953 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 21 0.71433 3.00159 0.91555 2.80549 22 a - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 22 1.71389 0.84426 2.40333 1.20550 23 c - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 23 1.67171 2.00545 2.85386 0.47827 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 24 1.72626 0.39387 3.17750 2.24510 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 25 1.86170 1.69916 1.28920 0.95123 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 26 2.51399 0.76932 3.13159 0.88655 27 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 27 1.33985 1.43958 1.75041 1.11662 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.42027 4.36103 1.10755 1.46634 0.26236 1.09861 0.40547 28 1.78755 2.14114 1.31528 0.80584 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03813 3.97889 3.97889 1.46634 0.26236 3.32792 0.03653 29 1.90313 0.75316 1.56559 1.76575 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03813 3.97889 3.97889 1.46634 0.26236 3.32792 0.03653 30 1.65355 1.43897 1.34110 1.17150 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03813 3.97889 3.97889 1.46634 0.26236 0.07444 2.63477 31 2.92889 0.31330 3.56929 1.67484 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 32 0.92595 1.71403 1.72938 1.40115 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 33 1.80869 3.47076 0.27343 3.11744 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 34 2.69372 1.61831 3.23555 0.36413 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 35 2.52552 3.34646 0.17408 3.11122 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 36 0.52215 3.04530 1.21149 2.79002 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 37 2.07082 2.57922 0.51087 1.61892 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 38 3.04341 0.75696 2.80878 0.86048 39 c - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 39 1.60679 3.10075 0.35970 2.87234 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.36454 4.36103 1.22855 1.46634 0.26236 1.09861 0.40547 40 2.14830 1.05195 2.71126 0.76013 41 u - - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03260 4.03260 1.46634 0.26236 3.21610 0.04094 41 0.82304 2.65908 0.94840 2.26785 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.03610 4.03260 4.03260 1.46634 0.26236 0.85387 0.55471 42 1.82220 1.27683 1.72879 0.96257 43 u - - - 1.38629 1.38629 1.38629 1.38629 0.03076 4.18998 4.18998 1.46634 0.26236 0.13993 2.03576 43 2.15239 1.41889 1.50349 0.86879 44 u - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 44 2.05530 2.25223 0.82270 1.11615 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 45 0.67049 1.32720 1.81603 2.80260 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 46 3.71106 0.28073 3.46903 1.66510 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 47 3.33332 4.38055 0.06663 4.11859 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 48 0.47807 3.37206 1.19403 3.15343 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 49 3.60468 3.41589 4.14736 0.07888 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 50 3.67945 4.66225 0.05105 4.19396 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 51 1.76214 3.44385 0.28646 3.09089 52 G - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 52 0.35695 3.17806 1.59512 2.88883 53 A - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 53 2.76034 1.78752 3.29387 0.31164 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 54 3.67945 4.66225 0.05105 4.19396 55 G - - - 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 55 3.31137 4.34187 0.06875 4.07698 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 56 3.76878 2.57093 3.69024 0.13297 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 57 3.30377 4.32864 0.06949 4.06277 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 58 1.50868 2.11362 0.79452 1.57892 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.16048 1.99880 4.36103 0.17881 1.80948 1.09861 0.40547 59 0.09261 4.38613 2.84336 4.02998 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 60 2.53445 3.35957 0.17192 3.12597 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 61 3.34231 4.39658 0.06578 4.13586 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 62 0.50806 3.10680 1.23319 2.77683 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 63 0.05262 4.26705 3.90944 4.06364 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 64 3.67945 4.66225 0.05105 4.19396 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.02586 4.36103 4.36103 1.46634 0.26236 1.09861 0.40547 65 0.05262 4.26705 3.90944 4.06364 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.01301 4.34818 * 1.46634 0.26236 0.00000 * //