# STOCKHOLM 1.0
#=GF ID TB6Cs1H4
#=GF AC RF01548
#=GF DE Trypanosomatid snoRNA TB6Cs1H4
#=GF AU Osuch I
#=GF GA 60.0
#=GF NC 58.4
#=GF TC 61.1
#=GF SE Predicted; WAR;
#=GF SS Predicted; WAR;
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.07 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 15840815
#=GF RT A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in
#=GF RT Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA
#=GF RT modification.
#=GF RA Liang XH, Uliel S, Hury A, Barth S, Doniger T, Unger R, Michaeli S
#=GF RL RNA. 2005;11:619-645.
#=GF WK Trypanosome_H/ACA_box_snoRNAs
#=GF SQ 4

AAHK01030140.1/350-422   CCCCUCAACGUUAGAGGUCCCUUGGUGGCU---GUAU-CUAUCGAUGUCGCUUCACAGGAUACCCAUUGAGGCUAGA
AC013353.9/110422-110350 CACCUCAUUAUUAAAGGUCCCUUGGCGACU---GUAC-UUAUCGAUGCCGCUCCACAGGAUACCCAUUGAGGUUAGA
FR798998.1/765999-765924 CGCCGCG-CAUUCAAGGUCCCUUGGCGGCGAUUAUAUACCCUCGAUGCUGCUUCACAGGAUACCCAGCGUGGCCAGA
FR799579.1/615388-615463 CGCCGCG-CAUUCAAGGUCCCUUGGCGGCGAUUAUAUACCCUCGGUGCUGCUUCACAGGAUACCCAGCGUGGCCAGA
#=GC SS_cons             :<<<<<<---------<<<<----<<<<<_...____.________>>>>>------>>>>------>>>>>>::::
#=GC RF                  CgCCuCgucAUUaAAGgUCCCUUGGcggCu...aUAU.cuaUCGAUGccgCUUCACAGGAuACCCAucGaGGcuAGA
//
