# STOCKHOLM 1.0
#=GF ID TB6Cs1H1
#=GF AC RF01546
#=GF DE Trypanosomatid snoRNA TB6Cs1H1
#=GF AU Osuch I
#=GF GA 40.0
#=GF NC 39.7
#=GF TC 48.7
#=GF SE Predicted; WAR;
#=GF SS Predicted; WAR;
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.96 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 15840815
#=GF RT A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in
#=GF RT Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA
#=GF RT modification.
#=GF RA Liang XH, Uliel S, Hury A, Barth S, Doniger T, Unger R, Michaeli S
#=GF RL RNA. 2005;11:619-645.
#=GF WK Trypanosome_H/ACA_box_snoRNAs
#=GF SQ 6

AAHK01012838.1/375-440   CGGCCAGCGAAAACACAGGCGCCGUG-CUUGC-AACGAUCACUUCGCCUGCACCUGUGCUGCCCCAGA
AC013353.9/110996-110931 AGGCUAGCGAAAACACAGGCGUUUUG-CUUAC-GUCAAUCACUGCGUCUGCACCUGUGCUACCCGAGA
AAHK01012125.1/639-574   CGGCCAGCGAAAACACAGGCGCCGUG-CUUGC-AACGAUCACCUCGCCUGCACCUGUGCUGCCCCAGA
FR796458.1/633590-633657 AGGUCAGCGAAAACACAGUCGAAGUGGUAUUGACCCCGUCAUUUCGCCUGCACCUGUGCUGUCCGAGA
FR799579.1/612347-612414 AGGUCAGCGAAAACACAGUCGAAGCGGUAUUGACCCCGUCAUUUCGCCUGCACCUGUGCUGUCCGAGA
HE575319.1/404948-404883 AGGUCAGCGAAAACACAGGCGUUUUG-UUUAC-AUGGGUCACUGCGUCUGCACCUGUGCUGUCCGAGA
#=GC SS_cons             :<<-<<<<<------<<<<<<<--<<._____.______>>-->>>>>>>------>>>>>->>::::
#=GC RF                  aGGuCAGCGAAAACACAGgCGcuguG.uuUac.auCgaUCacUgCGcCUGCACCUGUGCUGuCCgAGA
//
