INFERNAL1/a [1.1.5 | Sep 2023] NAME TB3Cs2H1 ACC RF01545 DESC Trypanosomatid snoRNA TB3Cs2H1 STATES 211 NODES 56 CLEN 69 W 85 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 18:48:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01545/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.738281 CKSUM 862896885 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 72.00 NC 47.60 EFP7GF -5.3617 0.72722 ECMLC 0.69914 -5.21147 2.96080 1600000 363552 0.003301 ECMGC 0.39516 -17.37852 -3.23539 1600000 106966 0.003740 ECMLI 0.58661 -5.31950 3.93749 1600000 273834 0.004382 ECMGI 0.42098 -12.59398 -0.05505 1600000 78443 0.005099 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 105 -6.867 -7.074 -0.056 -5.489 IL 1 1 2 1 4 1 19 89 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 19 85 105 -7.890 -0.022 -6.544 1.685 -2.222 -1.869 -1.750 D 4 2 3 5 3 0 14 83 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 18 84 104 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 7 5 3 8 3 0 13 82 102 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 17 85 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 69 - A - - MR 9 8 3 11 3 1 17 83 103 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 10 8 3 11 3 0 11 81 101 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 84 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 68 - G - - MR 12 11 3 14 3 1 17 82 102 -8.285 -0.020 -6.603 -1.421 -2.615 1.684 -2.001 D 13 11 3 14 3 0 10 80 100 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 83 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 67 - A - - MR 15 14 3 17 3 1 16 81 101 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 16 14 3 17 3 0 9 79 99 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 14 82 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 66 - G - - MR 18 17 3 20 5 1 16 80 100 -7.029 -0.041 -6.844 -7.056 -7.948 -1.421 -2.615 1.684 -2.001 D 19 17 3 20 5 0 8 78 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 13 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 65 U A - - MP 21 20 3 25 6 2 17 79 99 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.037 -3.857 -3.892 -0.163 -2.867 -4.470 1.457 -3.552 -3.898 0.114 -4.279 -1.761 3.250 -4.194 -0.547 -2.737 ML 22 20 3 25 6 1 10 77 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 10 77 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 5 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 12 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 64 G C - - MP 27 26 6 31 6 2 16 77 97 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 28 26 6 31 6 1 10 75 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 9 75 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 11 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 76 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 63 A U - - MP 33 32 6 37 6 2 15 75 95 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.671 -2.734 -3.698 3.248 -3.977 -5.029 0.315 -3.748 -3.595 1.209 -4.137 -0.230 -0.103 -4.236 -1.626 -2.539 ML 34 32 6 37 6 1 9 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 73 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 4 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 74 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 62 G C - - MP 39 38 6 43 6 2 14 73 93 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 40 38 6 43 6 1 9 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 8 71 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 4 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 10 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 10 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 61 G C - - MP 45 44 6 49 6 2 13 71 91 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 46 44 6 49 6 1 8 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 7 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 3 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 9 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 9 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 60 G C - - MP 51 50 6 55 6 2 11 69 89 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 52 50 6 55 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 6 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 3 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 8 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 8 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 59 c g - - MP 57 56 6 61 4 2 9 67 87 -6.867 -7.074 -0.056 -5.489 -2.475 -2.536 1.073 0.687 -2.170 -3.324 1.683 -2.672 -2.626 0.859 -3.129 -0.885 1.200 -2.747 1.516 -1.702 ML 58 56 6 61 4 1 6 67 87 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 4 66 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 3 65 86 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 8 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 7 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - C - - - ML 63 62 6 65 3 1 8 64 84 -7.890 -0.022 -6.544 -1.562 1.572 -2.379 -1.012 D 64 62 6 65 3 0 2 63 83 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - U - - - ML 66 65 3 68 3 1 7 63 83 -7.890 -0.022 -6.544 -1.349 -1.370 -2.075 1.577 D 67 65 3 68 3 0 2 62 82 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 69 68 3 71 3 1 6 62 82 -7.890 -0.022 -6.544 1.685 -2.222 -1.869 -1.750 D 70 68 3 71 3 0 1 61 81 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 72 71 3 74 3 1 6 61 81 -7.890 -0.022 -6.544 1.685 -2.222 -1.869 -1.750 D 73 71 3 74 3 0 1 60 79 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 75 74 3 77 3 1 5 60 80 -7.890 -0.022 -6.544 -1.421 -2.615 1.684 -2.001 D 76 74 3 77 3 0 0 59 78 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 78 77 3 80 3 1 4 59 79 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 79 77 3 80 3 0 0 58 77 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 3 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 58 - U - - MR 81 80 3 83 3 1 4 58 78 -8.285 -0.020 -6.603 -1.349 -1.370 -2.075 1.577 D 82 80 3 83 3 0 0 56 76 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - U - - MR 84 83 3 86 3 1 3 57 77 -8.285 -0.020 -6.603 -1.349 -1.370 -2.075 1.577 D 85 83 3 86 3 0 0 55 75 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - A - - MR 87 86 3 89 3 1 3 56 76 -8.285 -0.020 -6.603 1.685 -2.222 -1.869 -1.750 D 88 86 3 89 3 0 0 54 74 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 55 - C - - MR 90 89 3 92 3 1 2 55 75 -8.285 -0.020 -6.603 -1.562 1.572 -2.379 -1.012 D 91 89 3 92 3 0 0 53 73 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 54 - U - - MR 93 92 3 95 3 1 2 54 74 -8.285 -0.020 -6.603 -1.349 -1.370 -2.075 1.577 D 94 92 3 95 3 0 0 52 72 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 53 - G - - MR 96 95 3 98 5 1 1 53 73 -7.029 -0.041 -6.844 -7.056 -7.948 -1.421 -2.615 1.684 -2.001 D 97 95 3 98 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 53 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 52 g u - - MP 99 98 3 103 6 2 3 52 72 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.523 -2.329 -3.682 1.189 -4.322 -5.048 0.054 -3.718 -3.370 1.483 -3.886 2.978 -0.306 -4.275 -1.887 -2.403 ML 100 98 3 103 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 51 C G - - MP 105 104 6 109 6 2 2 50 70 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.401 -4.294 -4.116 -0.540 -2.867 -4.547 3.503 -3.662 -4.161 -0.277 -4.437 -2.239 0.662 -4.480 -0.570 -3.006 ML 106 104 6 109 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 50 U A - - MP 111 110 6 115 6 2 2 48 68 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.037 -3.857 -3.892 -0.163 -2.867 -4.470 1.457 -3.552 -3.898 0.114 -4.279 -1.761 3.250 -4.194 -0.547 -2.737 ML 112 110 6 115 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 49 G C - - MP 117 116 6 121 6 2 2 46 66 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 118 116 6 121 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 48 g c - - MP 123 122 6 127 6 2 2 44 64 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -2.762 -2.579 -2.835 0.848 0.867 -3.599 1.596 -2.930 -2.890 2.131 -3.382 -0.647 1.153 -2.981 -0.298 -1.885 ML 124 122 6 127 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 47 G C - - MP 129 128 6 133 6 2 2 42 62 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -4.600 -3.026 -4.687 0.294 -5.032 -4.637 -0.432 -4.918 -4.233 3.602 -4.581 -0.721 -0.821 -4.374 -2.462 -3.566 ML 130 128 6 133 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 22 46 g c - - MP 135 134 6 139 6 2 2 40 59 -9.077 -9.017 -0.022 -7.793 -8.073 -8.468 -3.619 -2.484 -3.675 1.029 -4.235 -4.446 0.200 -3.961 -3.594 2.944 -4.037 1.579 -0.088 -3.782 -1.753 -2.558 ML 136 134 6 139 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 37 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 23 45 a u - - MP 141 140 6 145 4 2 2 38 57 -6.867 -7.074 -0.056 -5.489 -2.738 -2.306 -2.860 2.158 -2.879 -3.832 1.045 -3.049 -2.849 1.457 -3.385 -0.143 0.721 -3.101 -0.760 1.272 ML 142 140 6 145 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 38 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 37 57 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 24 - a - - - ML 147 146 6 149 3 1 1 36 55 -7.890 -0.427 -1.988 0.607 0.231 -1.063 -0.279 D 148 146 6 149 3 0 0 34 54 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 25 - U - - - ML 150 149 3 152 3 1 1 35 54 -7.491 -0.029 -6.145 -0.675 -0.831 -1.349 1.275 D 151 149 3 152 3 0 0 33 52 -7.815 -3.328 -0.158 IL 152 152 3 152 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 26 - U - - - ML 153 152 3 155 3 1 1 34 53 -7.491 -0.029 -6.145 -0.675 -0.831 -1.349 1.275 D 154 152 3 155 3 0 0 32 52 -7.815 -0.360 -2.207 IL 155 155 3 155 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 27 - C - - - ML 156 155 3 158 3 1 1 32 52 -7.890 -0.022 -6.544 -1.562 1.572 -2.379 -1.012 D 157 155 3 158 3 0 0 31 51 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 28 - G - - - ML 159 158 3 161 3 1 1 31 50 -7.890 -0.022 -6.544 -1.421 -2.615 1.684 -2.001 D 160 158 3 161 3 0 0 30 49 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 29 - G - - - ML 162 161 3 164 3 1 1 30 49 -7.890 -0.022 -6.544 -1.421 -2.615 1.684 -2.001 D 163 161 3 164 3 0 0 29 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 30 - u - - - ML 165 164 3 167 3 1 1 29 48 -7.890 -0.022 -6.544 0.541 -0.811 -1.015 0.565 D 166 164 3 167 3 0 0 28 47 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 31 - a - - - ML 168 167 3 170 3 1 1 28 47 -7.890 -0.022 -6.544 0.691 -1.332 0.475 -0.742 D 169 167 3 170 3 0 0 27 46 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 32 - u - - - ML 171 170 3 173 3 1 1 27 46 -7.890 -0.022 -6.544 -0.647 0.433 -1.417 0.711 D 172 170 3 173 3 0 0 26 45 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 33 - u - - - ML 174 173 3 176 3 1 1 26 45 -7.890 -0.022 -6.544 -0.647 0.433 -1.417 0.711 D 175 173 3 176 3 0 0 25 44 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 34 - U - - - ML 177 176 3 179 3 1 1 25 44 -7.890 -0.022 -6.544 -1.349 -1.370 -2.075 1.577 D 178 176 3 179 3 0 0 24 43 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - u - - - ML 180 179 3 182 3 1 1 24 42 -7.890 -0.022 -6.544 0.541 -0.811 -1.015 0.565 D 181 179 3 182 3 0 0 23 42 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - U - - - ML 183 182 3 185 3 1 1 22 41 -7.890 -0.022 -6.544 -1.349 -1.370 -2.075 1.577 D 184 182 3 185 3 0 0 21 40 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - C - - - ML 186 185 3 188 3 1 1 21 40 -7.890 -0.022 -6.544 -1.562 1.572 -2.379 -1.012 D 187 185 3 188 3 0 0 20 39 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - C - - - ML 189 188 3 191 3 1 1 20 39 -7.890 -0.022 -6.544 -1.562 1.572 -2.379 -1.012 D 190 188 3 191 3 0 0 19 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - a - - - ML 192 191 3 194 3 1 1 19 37 -7.890 -0.022 -6.544 0.691 -1.332 0.475 -0.742 D 193 191 3 194 3 0 0 18 37 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - U - - - ML 195 194 3 197 3 1 1 18 36 -7.890 -0.022 -6.544 -1.349 -1.370 -2.075 1.577 D 196 194 3 197 3 0 0 17 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 41 - G - - - ML 198 197 3 200 3 1 1 16 35 -7.890 -0.022 -6.544 -1.421 -2.615 1.684 -2.001 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 42 - u - - - ML 201 200 3 203 3 1 1 15 33 -7.890 -0.022 -6.544 -0.647 0.433 -1.417 0.711 D 202 200 3 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 43 - u - - - ML 204 203 3 206 3 1 1 13 32 -7.890 -0.022 -6.544 -0.647 0.433 -1.417 0.711 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 44 - u - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -0.647 0.433 -1.417 0.711 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB3Cs2H1 ACC RF01545 DESC Trypanosomatid snoRNA TB3Cs2H1 LENG 69 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 18:48:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01545/CM NSEQ 2 EFFN 1.605469 CKSUM 862896885 STATS LOCAL MSV -8.2643 0.72722 STATS LOCAL VITERBI -9.5767 0.72722 STATS LOCAL FORWARD -2.8902 0.72722 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44609 1.42489 1.31036 1.36943 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23787 2.85122 2.61410 2.51719 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23787 2.85122 2.61410 2.51719 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57151 1.62152 2.27321 0.47321 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.33943 2.83007 0.24532 2.77809 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.53916 2.33618 1.52209 2.28465 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.34033 2.83093 0.24505 2.77936 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.34018 2.83079 0.24509 2.77915 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.33994 2.83055 0.24517 2.77881 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 1.38981 1.45398 1.75342 1.06694 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.37978 0.32616 2.94229 2.01743 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.25392 2.28048 2.75325 0.31600 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23787 2.85122 2.61410 2.51719 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23787 2.85122 2.61410 2.51719 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.29097 3.10517 0.24158 2.67902 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.23787 2.85122 2.61410 2.51719 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 1.76126 2.49978 0.42313 2.39610 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81345 0.35663 2.53625 1.82756 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57541 1.62148 2.27457 0.47252 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.34021 2.83081 0.24508 2.77919 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.92340 1.16467 1.13705 1.50914 20 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.33987 2.83049 0.24519 2.77872 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 1.87149 2.43566 0.41622 2.31231 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.19507 1.85691 1.39309 1.22808 23 a - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.97370 1.23952 2.09895 1.55966 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.33172 3.73767 1.35285 1.46634 0.26236 1.09861 0.40547 25 1.81572 1.93338 2.27873 0.52728 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06424 3.47019 3.47019 1.46634 0.26236 2.55390 0.08097 26 1.81572 1.93338 2.27873 0.52728 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06424 3.47019 3.47019 1.46634 0.26236 0.16908 1.86075 27 2.37978 0.32616 2.94229 2.01743 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.29097 3.10517 0.24158 2.67902 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.29097 3.10517 0.24158 2.67902 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.01663 1.93187 2.07044 1.00190 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.91514 2.27855 1.07088 1.86818 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.80535 1.10085 2.33557 0.90081 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.80535 1.10085 2.33557 0.90081 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.25392 2.28048 2.75325 0.31600 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.01663 1.93187 2.07044 1.00190 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.25392 2.28048 2.75325 0.31600 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.37978 0.32616 2.94229 2.01743 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.37978 0.32616 2.94229 2.01743 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.91514 2.27855 1.07088 1.86818 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.25392 2.28048 2.75325 0.31600 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.29097 3.10517 0.24158 2.67902 41 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.80535 1.10085 2.33557 0.90081 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 1.80535 1.10085 2.33557 0.90081 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 1.80535 1.10085 2.33557 0.90081 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 1.98760 1.60236 1.66937 0.74826 45 u - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.54054 0.71040 2.24896 1.12634 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.99668 0.28651 2.66005 2.04623 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 1.31690 1.23916 1.34592 1.70317 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.99920 0.28616 2.66104 2.04672 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.53804 2.45177 1.45799 2.33030 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.10296 2.70497 0.30810 2.57452 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.62373 1.58890 2.31029 0.47147 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.29097 3.10517 0.24158 2.67902 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.25392 2.28048 2.75325 0.31600 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.37978 0.32616 2.94229 2.01743 55 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.23787 2.85122 2.61410 2.51719 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.25392 2.28048 2.75325 0.31600 57 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.25392 2.28048 2.75325 0.31600 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.68541 1.91553 0.70180 1.76216 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.99684 0.28649 2.66012 2.04626 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.99801 0.28633 2.66057 2.04649 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 2.99943 0.28613 2.66113 2.04676 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.51822 1.77352 2.15277 0.45649 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 3.00322 0.28562 2.66260 2.04750 64 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 0.53765 2.45284 1.45794 2.33182 65 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.29097 3.10517 0.24158 2.67902 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 0.23787 2.85122 2.61410 2.51719 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 2.29097 3.10517 0.24158 2.67902 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 69 0.23787 2.85122 2.61410 2.51719 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //