INFERNAL1/a [1.1.4 | Dec 2020] NAME TB11Cs5H3 ACC RF01544 DESC Trypanosomatid snoRNA TB11Cs5H3 STATES 199 NODES 48 CLEN 65 W 99 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:27:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.797852 CKSUM 425217780 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 52.10 NC 36.90 EFP7GF -9.8981 0.71925 ECMLC 0.69378 -4.89210 3.36593 1600000 369281 0.003250 ECMGC 0.43891 -15.27016 -2.33824 1600000 116707 0.003427 ECMLI 0.69365 -3.35569 4.46520 1600000 272411 0.004405 ECMGI 0.48917 -9.94810 0.92384 1600000 81612 0.004901 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 99 136 -7.266 -7.473 -0.042 -5.887 IL 1 1 2 1 4 1 16 101 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 101 138 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 99 136 -8.635 -0.015 -6.952 1.317 -0.676 -1.468 -0.938 D 4 2 3 5 3 0 10 98 135 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 14 100 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - A - - MR 6 5 3 8 3 1 15 98 135 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 7 5 3 8 3 0 8 96 133 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 99 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 78 - G - - MR 9 8 3 11 3 1 15 97 134 -8.635 -0.015 -6.952 -2.201 -3.507 1.832 -2.892 D 10 8 3 11 3 0 7 95 132 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 98 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 77 - A - - MR 12 11 3 14 3 1 14 96 133 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 13 11 3 14 3 0 6 94 131 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 97 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 76 - u - - MR 15 14 3 17 5 1 14 95 132 -7.356 -0.032 -7.172 -7.384 -8.276 0.027 0.132 -0.353 0.140 D 16 14 3 17 5 0 6 94 130 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 10 95 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 75 G C - - MP 18 17 3 22 6 2 15 94 131 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -5.323 -3.376 -5.501 -0.202 -6.045 -4.912 -1.265 -5.767 -4.686 3.751 -4.986 -1.104 -1.636 -4.843 -3.337 -4.369 ML 19 17 3 22 6 1 7 92 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 7 92 129 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 3 89 126 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 9 94 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 9 93 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 74 c g - - MP 24 23 6 28 6 2 14 92 129 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.644 -3.181 -3.610 0.519 -2.956 -4.301 2.571 -3.485 -3.633 2.195 -4.067 -0.973 0.948 -3.763 -0.574 -2.482 ML 25 23 6 28 6 1 7 90 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 7 90 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 2 87 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 9 92 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 9 91 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 73 a u - - MP 30 29 6 34 6 2 14 90 127 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.150 -2.941 -3.199 2.124 -2.674 -3.966 2.015 -3.180 -3.230 1.101 -3.717 -0.913 1.576 -3.357 -0.401 -2.166 ML 31 29 6 34 6 1 7 88 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 6 88 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 85 122 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 90 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 9 89 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 72 c g - - MP 36 35 6 40 6 2 13 88 125 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.939 -3.003 -3.003 0.287 -2.414 0.224 2.697 -2.986 -3.036 0.386 -3.511 -1.338 1.061 -3.192 1.065 -2.080 ML 37 35 6 40 6 1 6 86 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 6 86 123 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 2 83 120 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 8 88 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 87 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 71 A U - - MP 42 41 6 46 6 2 12 86 123 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.736 -2.676 -3.848 3.106 -4.664 -5.408 -0.390 -4.008 -3.667 1.178 -4.245 1.454 -0.609 -4.418 -2.274 -2.641 ML 43 41 6 46 6 1 6 84 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 5 84 121 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 2 81 118 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 86 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 85 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 70 G C - - MP 48 47 6 52 6 2 10 84 121 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -4.238 -2.854 -4.240 1.407 -4.978 -4.688 -0.316 -4.626 -4.139 3.371 -4.513 -0.482 -0.610 -4.145 -2.319 -3.131 ML 49 47 6 52 6 1 5 83 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 82 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 2 79 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 7 84 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 7 83 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 69 u a - - MP 54 53 6 58 6 2 9 82 119 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.713 -2.785 -2.816 0.566 -2.345 -3.595 1.664 -2.866 -2.848 0.675 -3.366 -1.073 2.132 -2.987 1.345 0.185 ML 55 53 6 58 6 1 5 81 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 4 80 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 78 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 82 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 81 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 68 u a - - MP 60 59 6 64 4 2 7 80 117 -7.266 -7.473 -0.042 -5.887 -2.363 -2.476 -2.500 0.715 -2.191 -3.301 1.598 -2.659 -2.548 0.788 -3.083 -0.892 1.928 0.071 1.363 -1.648 ML 61 59 6 64 4 1 4 79 116 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 2 79 116 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 1 78 114 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 5 81 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 5 80 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - C - - - ML 66 65 6 68 3 1 6 78 115 -8.262 -0.017 -6.916 -2.471 1.774 -3.300 -1.742 D 67 65 6 68 3 0 1 76 113 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 4 79 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 69 68 3 71 3 1 6 77 114 -8.262 -0.017 -6.916 -2.201 -3.507 1.832 -2.892 D 70 68 3 71 3 0 1 75 112 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 78 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 72 71 3 74 3 1 5 76 113 -8.262 -0.017 -6.916 1.821 -2.975 -2.548 -2.579 D 73 71 3 74 3 0 1 74 111 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 3 77 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 75 74 3 77 3 1 4 75 112 -8.262 -0.017 -6.916 1.821 -2.975 -2.548 -2.579 D 76 74 3 77 3 0 0 73 110 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 3 76 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 78 77 3 80 3 1 4 74 111 -8.262 -0.017 -6.916 -2.201 -3.507 1.832 -2.892 D 79 77 3 80 3 0 0 72 109 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 3 75 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - G - - - ML 81 80 3 83 3 1 3 73 110 -2.127 -0.390 -6.952 -2.201 -3.507 1.832 -2.892 D 82 80 3 83 3 0 0 71 108 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 2 73 110 -2.849 -0.266 -5.088 0.000 0.000 0.000 0.000 [ MATR 20 ] - 67 - A - - MR 84 83 3 86 3 1 3 72 109 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 85 83 3 86 3 0 0 70 107 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 72 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 66 - A - - MR 87 86 3 89 3 1 3 71 108 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 88 86 3 89 3 0 0 69 106 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 71 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 65 - A - - MR 90 89 3 92 3 1 2 70 107 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 91 89 3 92 3 0 0 68 105 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 70 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 64 - C - - MR 93 92 3 95 3 1 2 69 106 -8.635 -0.015 -6.952 -2.471 1.774 -3.300 -1.742 D 94 92 3 95 3 0 0 67 104 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 69 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 63 - U - - MR 96 95 3 98 3 1 2 68 105 -8.635 -0.015 -6.952 -2.051 -1.951 -2.807 1.747 D 97 95 3 98 3 0 0 66 103 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 68 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 62 - U - - MR 99 98 3 101 5 1 2 67 104 -7.356 -0.032 -7.172 -7.384 -8.276 -2.051 -1.951 -2.807 1.747 D 100 98 3 101 5 0 0 65 102 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 67 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 61 C G - - MP 102 101 3 106 6 2 3 66 103 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -5.210 -5.171 -4.783 -1.356 -3.373 -5.107 3.712 -4.249 -4.862 -1.192 -5.044 -3.135 0.065 -5.233 -1.103 -3.683 ML 103 101 3 106 6 1 1 64 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 64 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 61 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 65 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 65 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 60 C G - - MP 108 107 6 112 6 2 2 64 101 -9.237 -9.176 -0.113 -7.953 -3.937 -8.628 -5.210 -5.171 -4.783 -1.356 -3.373 -5.107 3.712 -4.249 -4.862 -1.192 -5.044 -3.135 0.065 -5.233 -1.103 -3.683 ML 109 107 6 112 6 1 1 62 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 62 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 59 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 63 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 63 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 59 G C - - MP 114 113 6 118 4 2 2 62 99 -7.044 -2.555 -0.317 -5.665 -4.008 -2.728 -4.022 1.412 -4.605 -4.544 -0.031 -4.364 -3.937 3.297 -4.331 -0.363 -0.340 -3.975 -2.024 -2.918 ML 115 113 6 118 4 1 1 60 97 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 59 96 -5.737 -4.766 -2.634 -0.352 -0.466 -0.677 -1.117 1.131 D 117 113 6 118 4 0 0 59 95 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 63 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 63 100 -0.743 -1.397 -5.468 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - U - - - ML 120 119 6 122 5 1 1 57 92 -7.172 -0.430 -2.056 -7.199 -8.091 -0.582 -0.955 -0.514 1.081 D 121 119 6 122 5 0 0 55 90 -5.854 -1.697 -5.115 -0.860 -3.402 IL 122 122 3 122 5 1 1 57 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 54 c g - - MP 123 122 3 127 6 2 2 56 92 -8.972 -8.912 -0.023 -7.688 -7.968 -8.363 -3.315 -3.246 -3.215 0.373 -2.248 -3.786 2.638 -2.937 -3.246 0.680 -3.636 -1.304 1.364 -3.461 1.417 -2.150 ML 124 122 3 127 6 1 1 55 90 -7.593 -7.940 -0.387 -2.348 -7.789 -5.319 -0.897 1.285 -1.675 -0.488 MR 125 122 3 127 6 1 1 53 88 -7.822 -6.551 -2.460 -6.529 -1.663 -1.069 -0.354 -1.329 1.148 -0.730 D 126 122 3 127 6 0 0 50 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 56 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 55 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 53 A U - - MP 129 128 6 133 4 2 2 54 90 -1.780 -7.251 -0.551 -5.665 -3.956 -2.946 -3.962 3.429 -4.383 -5.462 -0.072 -3.993 -3.847 0.901 -4.403 -0.396 -0.489 -4.622 -2.012 -2.786 ML 130 128 6 133 4 1 1 51 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 49 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 47 83 -5.620 -0.881 -3.317 -1.572 IL 133 133 5 133 4 1 1 55 90 -0.749 -4.685 -1.478 -7.170 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 45 68 -1.233 -0.882 -4.963 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - U - - - ML 135 134 6 137 5 1 1 41 64 -7.356 -0.032 -7.172 -7.384 -8.276 -0.987 0.219 -1.772 1.028 D 136 134 6 137 5 0 0 40 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 137 137 3 137 5 1 1 42 65 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 50 u a - - MP 138 137 3 142 6 2 2 40 63 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.805 -2.890 -2.894 0.474 -2.366 -3.655 1.668 0.114 -2.924 0.552 -3.433 -1.183 2.378 -3.074 0.972 -1.962 ML 139 137 3 142 6 1 1 39 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 39 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 36 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 40 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 40 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 28 49 c g - - MP 144 143 6 148 6 2 2 38 61 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.348 -2.473 -2.493 0.755 0.053 -3.310 1.999 -2.639 -2.531 0.770 -3.075 -0.874 1.931 -2.650 -0.132 0.050 ML 145 143 6 148 6 1 1 37 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 37 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 34 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 38 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 38 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 48 g c - - MP 150 149 6 154 6 2 2 36 59 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.451 -2.597 -3.428 1.513 -3.544 -4.137 1.444 -3.712 -3.583 2.744 -3.992 -0.328 0.546 -3.441 -1.091 -2.380 ML 151 149 6 154 6 1 1 35 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 35 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 32 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 36 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 36 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 47 U G - - MP 156 155 6 160 6 2 2 34 57 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -4.698 -4.642 -4.262 -0.923 -2.854 -4.592 1.443 -3.676 -4.310 -0.831 -4.541 -2.628 0.518 -4.723 3.317 -3.153 ML 157 155 6 160 6 1 1 33 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 33 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 34 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 31 46 a u - - MP 162 161 6 166 6 2 2 32 55 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.383 -2.863 -3.428 2.697 -3.151 -4.328 1.091 -3.461 -3.419 1.164 -3.915 -0.607 1.548 -3.678 -0.867 -2.359 ML 163 161 6 166 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 30 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 32 45 C G - - MP 168 167 6 172 4 2 2 30 53 -2.002 -7.473 -0.458 -5.887 -4.236 -4.190 -4.003 -0.358 -2.755 -4.480 3.220 -3.526 -4.016 -0.154 -4.350 -2.136 1.712 -4.321 -0.413 -2.848 ML 169 167 6 172 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 27 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 26 49 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 30 53 -1.158 -2.085 -1.705 -6.724 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 24 42 -1.852 -0.556 -4.552 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - c - - - ML 174 173 6 176 3 1 1 21 40 -8.262 -0.017 -6.916 -0.018 0.556 -1.322 0.192 D 175 173 6 176 3 0 0 21 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - A - - - ML 177 176 3 179 3 1 1 20 39 -8.262 -0.017 -6.916 1.821 -2.975 -2.548 -2.579 D 178 176 3 179 3 0 0 20 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - U - - - ML 180 179 3 182 3 1 1 19 37 -8.262 -0.017 -6.916 -2.051 -1.951 -2.807 1.747 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - u - - - ML 183 182 3 185 3 1 1 18 36 -8.262 -0.017 -6.916 -0.468 0.223 -0.574 0.524 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - u - - - ML 186 185 3 188 3 1 1 16 35 -2.863 -0.227 -6.916 -0.372 -0.283 0.063 0.445 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 17 35 -1.910 -0.529 -4.610 0.000 0.000 0.000 0.000 [ MATL 44 ] 41 - u - - - ML 189 188 3 191 3 1 1 15 33 -8.262 -0.017 -6.916 -0.123 -0.197 -1.292 0.849 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - a - - - ML 192 191 3 194 3 1 1 13 31 -8.262 -0.017 -6.916 0.793 -1.040 -0.369 0.009 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - u - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 0.372 -0.904 -0.383 0.490 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME TB11Cs5H3 ACC RF01544 DESC Trypanosomatid snoRNA TB11Cs5H3 LENG 65 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:27:10 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 5 EFFN 4.721680 CKSUM 425217780 STATS LOCAL MSV -7.8431 0.71925 STATS LOCAL VITERBI -8.9466 0.71925 STATS LOCAL FORWARD -3.8794 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34526 1.48629 1.32536 1.39589 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 * 1 0.36407 1.88279 2.76118 2.41048 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 3.17469 4.08973 0.07918 4.04132 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 2.53901 0.81042 1.08636 1.97369 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 1.04539 1.29092 2.05795 1.40360 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 2.90533 0.48661 2.75110 1.32161 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 0.42706 3.66433 1.24511 3.38001 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 1.70233 3.25262 0.30871 3.10833 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 8 2.50922 1.72921 2.35384 0.43658 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 9 2.40331 1.73642 2.27489 0.46105 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 3.86170 0.07532 4.38131 3.24378 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 3.53883 4.50815 0.05915 4.05292 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 0.06182 4.11006 3.76157 3.89727 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 0.06182 4.11006 3.76157 3.89727 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 3.53883 4.50815 0.05915 4.05292 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 15 3.53883 4.50815 0.05915 4.05292 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.36321 1.23556 4.27667 0.09297 2.42163 1.09861 0.40547 16 4.14817 0.09375 4.01905 2.88730 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 17 4.14342 0.09394 4.01631 2.88637 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.20221 4.27667 1.77673 1.46634 0.26236 1.09861 0.40547 18 1.68719 3.03874 0.33934 2.90363 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03344 4.10789 4.10789 1.46634 0.26236 2.65195 0.07312 19 2.04930 2.29219 1.77835 0.50880 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.03344 4.10789 4.10789 1.46634 0.26236 2.65195 0.07312 20 2.54102 0.61478 2.46981 1.21789 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03344 4.10789 4.10789 1.46634 0.26236 2.65195 0.07312 21 0.19940 3.29722 2.29482 3.14617 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.42537 1.10856 4.10789 1.11208 0.39880 0.15202 1.95881 22 2.43298 1.17032 3.00210 0.59371 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 2.64186 1.30361 2.48726 0.55498 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 2.21801 1.01924 2.09807 0.89744 28 u - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 1.57339 1.74747 0.67254 2.22530 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 3.63201 2.04680 3.51212 0.20511 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 27 0.60014 2.31195 2.08735 1.47762 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 28 3.22722 0.40512 3.02135 1.40771 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.34625 1.27734 4.27667 0.72811 0.65936 1.09861 0.40547 29 1.44798 0.88526 2.53896 1.29682 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 30 0.06182 4.11006 3.76157 3.89727 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 31 3.45106 3.28261 3.99109 0.09181 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 32 1.89104 1.14704 1.79379 1.00737 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 33 1.79937 1.57205 1.26632 1.06389 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.20221 1.77673 4.27667 0.15679 1.93019 1.09861 0.40547 34 1.52139 1.51593 2.47446 0.73861 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 35 0.77420 2.27695 1.65582 1.40489 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 36 1.10641 2.16380 1.65408 1.01308 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.17560 1.91623 4.27667 0.17912 1.80792 1.09861 0.40547 37 1.53929 3.18339 0.36617 2.98310 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 38 1.57133 2.33116 2.13852 0.54954 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 39 2.64563 3.69187 0.13990 3.36199 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 40 2.46905 0.74619 1.64045 1.39727 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 41 0.97506 2.26637 1.15587 1.58787 49 a - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 42 0.85943 2.64684 1.14317 1.67710 50 a - - > 1.38629 1.38629 1.38629 1.38629 0.20221 1.77673 4.27667 0.15679 1.93019 1.09861 0.40547 43 3.42748 2.66832 3.20388 0.15367 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.34625 4.27667 1.27734 1.46634 0.26236 1.09861 0.40547 44 1.84487 2.47593 0.41917 2.29982 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.28185 1.48406 3.96893 1.39060 0.28625 0.09498 2.40116 45 2.98629 0.46017 2.82722 1.35027 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 46 3.17439 4.18740 0.07969 3.93282 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 47 3.18085 4.19860 0.07895 3.94500 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 48 3.45106 3.28261 3.99109 0.09181 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 49 3.45106 3.28261 3.99109 0.09181 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 50 3.86170 0.07532 4.38131 3.24378 64 C - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 51 0.06182 4.11006 3.76157 3.89727 65 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 52 0.06182 4.11006 3.76157 3.89727 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 53 0.06182 4.11006 3.76157 3.89727 67 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 54 1.19624 1.67200 0.91560 2.21162 68 g - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 55 1.06815 2.52333 0.95259 1.65850 69 g - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 56 3.33839 0.34854 3.06879 1.54969 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 57 3.56997 2.39262 3.44076 0.16439 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 58 2.24354 1.80330 0.41341 2.69159 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 59 1.56300 2.22544 1.18043 0.97996 73 u - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 60 2.22492 1.14447 0.75143 2.28437 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 61 4.22074 0.09530 3.96486 2.86042 75 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 62 1.40995 1.22587 1.61883 1.33100 76 c - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 63 0.06182 4.11006 3.76157 3.89727 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 64 3.53883 4.50815 0.05915 4.05292 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 65 0.06182 4.11006 3.76157 3.89727 79 A - - : 1.38629 1.38629 1.38629 1.38629 0.01418 4.26268 * 1.46634 0.26236 0.00000 * //