INFERNAL1/a [1.1.5 | Sep 2023] NAME TB11Cs5H3 ACC RF01544 DESC Trypanosomatid snoRNA TB11Cs5H3 STATES 199 NODES 48 CLEN 65 W 99 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 08:21:23 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01544/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.797852 CKSUM 425217780 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.60 NC 49.40 EFP7GF -9.9113 0.71923 ECMLC 0.69521 -4.89159 3.36610 1600000 373601 0.003212 ECMGC 0.44167 -15.21219 -2.34199 1600000 117689 0.003399 ECMLI 0.69201 -3.38767 4.45884 1600000 273733 0.004384 ECMGI 0.48360 -10.11198 0.88987 1600000 81792 0.004890 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 99 135 -7.266 -7.473 -0.042 -5.887 IL 1 1 2 1 4 1 16 101 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 101 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 16 99 135 -8.635 -0.015 -6.952 1.328 -0.702 -1.477 -0.953 D 4 2 3 5 3 0 10 97 134 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 14 99 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - A - - MR 6 5 3 8 3 1 15 98 134 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 7 5 3 8 3 0 8 96 132 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 98 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 78 - G - - MR 9 8 3 11 3 1 15 97 133 -8.635 -0.015 -6.952 -2.201 -3.507 1.832 -2.892 D 10 8 3 11 3 0 7 95 131 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 13 97 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 77 - A - - MR 12 11 3 14 3 1 14 96 132 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 13 11 3 14 3 0 6 94 131 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 96 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 76 - u - - MR 15 14 3 17 5 1 14 95 131 -7.356 -0.032 -7.172 -7.384 -8.276 0.070 0.093 -0.368 0.149 D 16 14 3 17 5 0 6 93 130 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 10 95 132 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 75 G C - - MP 18 17 3 22 6 2 15 94 130 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -5.323 -3.376 -5.501 -0.202 -6.045 -4.912 -1.265 -5.767 -4.686 3.751 -4.986 -1.104 -1.636 -4.843 -3.337 -4.369 ML 19 17 3 22 6 1 7 92 129 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 7 92 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 3 89 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 9 93 130 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 9 93 130 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 74 c g - - MP 24 23 6 28 6 2 14 92 128 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.642 -3.165 -3.608 0.530 -2.971 -4.298 2.543 -3.494 -3.634 2.232 -4.067 -0.954 0.936 -3.757 -0.588 -2.482 ML 25 23 6 28 6 1 7 90 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 7 90 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 2 87 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 9 91 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 9 91 128 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 73 a u - - MP 30 29 6 34 6 2 14 90 126 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.137 -2.936 -3.189 2.096 -2.664 -3.958 2.005 -3.170 -3.219 1.096 -3.708 -0.914 1.626 -3.347 -0.392 -2.157 ML 31 29 6 34 6 1 7 88 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 6 88 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 2 85 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 8 89 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 8 89 126 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 72 c g - - MP 36 35 6 40 6 2 13 88 124 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.952 -3.013 -3.015 0.278 -2.420 0.270 2.711 -2.994 -3.047 0.379 -3.520 -1.346 1.056 -3.204 1.014 -2.089 ML 37 35 6 40 6 1 6 86 123 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 6 86 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 2 83 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 8 87 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 87 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 71 A U - - MP 42 41 6 46 6 2 12 86 122 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.741 -2.681 -3.853 3.121 -4.670 -5.417 -0.395 -4.011 -3.672 1.172 -4.250 1.416 -0.614 -4.426 -2.279 -2.645 ML 43 41 6 46 6 1 6 84 121 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 5 84 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 2 81 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 85 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 85 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 70 G C - - MP 48 47 6 52 6 2 10 84 120 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -4.272 -2.872 -4.278 1.354 -5.018 -4.697 -0.349 -4.663 -4.161 3.393 -4.532 -0.502 -0.644 -4.169 -2.354 -3.168 ML 49 47 6 52 6 1 5 82 119 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 82 119 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 2 79 116 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 7 83 120 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 7 83 120 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 69 u a - - MP 54 53 6 58 6 2 9 82 118 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.710 -2.784 -2.814 0.563 -2.343 -3.591 1.661 -2.865 -2.846 0.671 -3.363 -1.075 2.099 -2.985 1.389 0.226 ML 55 53 6 58 6 1 5 80 117 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 4 80 117 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 1 78 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 81 118 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 81 118 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 68 u a - - MP 60 59 6 64 4 2 7 80 116 -7.266 -7.473 -0.042 -5.887 -2.359 -2.472 -2.497 0.722 -2.189 -3.300 1.602 -2.657 -2.545 0.794 -3.080 -0.886 1.967 -0.017 1.323 -1.644 ML 61 59 6 64 4 1 4 79 116 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 2 78 115 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 1 77 114 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 5 80 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 5 80 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - C - - - ML 66 65 6 68 3 1 6 78 114 -8.262 -0.017 -6.916 -2.471 1.774 -3.300 -1.742 D 67 65 6 68 3 0 1 76 112 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 4 79 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 69 68 3 71 3 1 6 77 113 -8.262 -0.017 -6.916 -2.201 -3.507 1.832 -2.892 D 70 68 3 71 3 0 1 75 111 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 78 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 72 71 3 74 3 1 5 76 112 -8.262 -0.017 -6.916 1.821 -2.975 -2.548 -2.579 D 73 71 3 74 3 0 1 74 110 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 3 77 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 75 74 3 77 3 1 4 75 111 -8.262 -0.017 -6.916 1.821 -2.975 -2.548 -2.579 D 76 74 3 77 3 0 0 73 109 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 3 76 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 78 77 3 80 3 1 4 74 110 -8.262 -0.017 -6.916 -2.201 -3.507 1.832 -2.892 D 79 77 3 80 3 0 0 72 108 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 3 75 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - G - - - ML 81 80 3 83 3 1 3 73 109 -2.083 -0.404 -6.952 -2.201 -3.507 1.832 -2.892 D 82 80 3 83 3 0 0 71 108 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 2 73 109 -2.871 -0.261 -5.109 0.000 0.000 0.000 0.000 [ MATR 20 ] - 67 - A - - MR 84 83 3 86 3 1 3 72 108 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 85 83 3 86 3 0 0 70 106 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 72 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 66 - A - - MR 87 86 3 89 3 1 3 71 107 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 88 86 3 89 3 0 0 69 105 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 2 71 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 65 - A - - MR 90 89 3 92 3 1 2 70 106 -8.635 -0.015 -6.952 1.821 -2.975 -2.548 -2.579 D 91 89 3 92 3 0 0 68 104 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 70 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 64 - C - - MR 93 92 3 95 3 1 2 69 105 -8.635 -0.015 -6.952 -2.471 1.774 -3.300 -1.742 D 94 92 3 95 3 0 0 67 103 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 69 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 63 - U - - MR 96 95 3 98 3 1 2 68 104 -8.635 -0.015 -6.952 -2.051 -1.951 -2.807 1.747 D 97 95 3 98 3 0 0 66 102 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 68 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 62 - U - - MR 99 98 3 101 5 1 2 67 103 -7.356 -0.032 -7.172 -7.384 -8.276 -2.051 -1.951 -2.807 1.747 D 100 98 3 101 5 0 0 65 102 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 67 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 61 C G - - MP 102 101 3 106 6 2 3 66 102 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -5.210 -5.171 -4.783 -1.356 -3.373 -5.107 3.712 -4.249 -4.862 -1.192 -5.044 -3.135 0.065 -5.233 -1.103 -3.683 ML 103 101 3 106 6 1 1 64 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 63 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 61 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 65 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 65 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 60 C G - - MP 108 107 6 112 6 2 2 64 100 -9.237 -9.176 -0.109 -7.953 -3.986 -8.628 -5.210 -5.171 -4.783 -1.356 -3.373 -5.107 3.712 -4.249 -4.862 -1.192 -5.044 -3.135 0.065 -5.233 -1.103 -3.683 ML 109 107 6 112 6 1 1 62 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 61 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 59 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 63 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 63 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 59 G C - - MP 114 113 6 118 4 2 2 62 98 -7.053 -2.649 -0.298 -5.674 -3.965 -2.706 -3.976 1.492 -4.559 -4.534 0.006 -4.319 -3.910 3.262 -4.308 -0.338 -0.301 -3.946 -1.984 -2.873 ML 115 113 6 118 4 1 1 60 97 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 4 1 1 59 95 -5.713 -4.742 -2.609 -0.359 -0.446 -0.663 -1.095 1.115 D 117 113 6 118 4 0 0 58 95 -4.568 -4.250 -2.265 -0.520 IL 118 118 5 118 4 1 1 62 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 63 100 -0.756 -1.379 -5.415 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - U - - - ML 120 119 6 122 5 1 1 57 92 -7.179 -0.428 -2.061 -7.206 -8.098 -0.557 -0.951 -0.424 1.041 D 121 119 6 122 5 0 0 55 90 -5.830 -1.674 -5.091 -0.880 -3.379 IL 122 122 3 122 5 1 1 57 93 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 21 54 c g - - MP 123 122 3 127 6 2 2 56 92 -8.976 -8.915 -0.023 -7.692 -7.972 -8.367 -3.318 -3.253 -3.217 0.362 -2.250 -3.787 2.603 -2.940 -3.248 0.665 -3.638 -1.316 1.358 -3.464 1.519 -2.154 ML 124 122 3 127 6 1 1 55 90 -7.595 -7.941 -0.386 -2.350 -7.791 -5.320 -0.898 1.286 -1.676 -0.489 MR 125 122 3 127 6 1 1 53 88 -7.800 -6.528 -2.437 -6.507 -1.641 -1.094 -0.331 -1.300 1.127 -0.703 D 126 122 3 127 6 0 0 50 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 56 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 55 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 22 53 A U - - MP 129 128 6 133 4 2 2 54 90 -1.787 -7.260 -0.548 -5.674 -3.970 -2.957 -3.975 3.436 -4.404 -5.484 -0.092 -4.005 -3.860 0.885 -4.417 -0.405 -0.508 -4.642 -2.032 -2.799 ML 130 128 6 133 4 1 1 51 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 49 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 47 83 -5.593 -0.904 -3.290 -1.545 IL 133 133 5 133 4 1 1 55 90 -0.748 -4.687 -1.478 -7.172 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 45 68 -1.237 -0.880 -4.940 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - u - - - ML 135 134 6 137 5 1 1 41 64 -7.356 -0.032 -7.172 -7.384 -8.276 -0.979 0.263 -1.767 0.999 D 136 134 6 137 5 0 0 40 63 -4.959 -0.803 -4.221 -2.596 -2.508 IL 137 137 3 137 5 1 1 42 65 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 50 u a - - MP 138 137 3 142 6 2 2 40 63 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.811 -2.895 -2.900 0.473 -2.369 -3.660 1.669 0.076 -2.929 0.552 -3.438 -1.184 2.397 -3.080 0.942 -1.966 ML 139 137 3 142 6 1 1 39 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 39 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 36 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 40 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 40 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 28 49 c g - - MP 144 143 6 148 6 2 2 38 61 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -2.351 -2.475 -2.496 0.757 -0.022 -3.314 1.990 -2.642 -2.534 0.773 -3.078 -0.872 1.967 -2.653 -0.132 0.017 ML 145 143 6 148 6 1 1 37 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 37 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 34 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 38 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 38 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 48 g c - - MP 150 149 6 154 6 2 2 36 59 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.478 -2.596 -3.450 1.499 -3.598 -4.151 1.389 -3.747 -3.610 2.785 -4.012 -0.320 0.507 -3.455 -1.133 -2.401 ML 151 149 6 154 6 1 1 35 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 35 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 32 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 36 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 36 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 47 U G - - MP 156 155 6 160 6 2 2 34 57 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -4.698 -4.642 -4.262 -0.923 -2.854 -4.592 1.443 -3.676 -4.310 -0.831 -4.541 -2.628 0.518 -4.723 3.317 -3.153 ML 157 155 6 160 6 1 1 33 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 33 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 30 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 34 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 34 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 31 46 a u - - MP 162 161 6 166 6 2 2 32 55 -9.237 -9.176 -0.019 -7.953 -8.233 -8.628 -3.394 -2.864 -3.438 2.717 -3.168 -4.343 1.076 -3.471 -3.428 1.164 -3.923 -0.602 1.520 -3.691 -0.883 -2.367 ML 163 161 6 166 6 1 1 31 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 30 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 28 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 32 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 32 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 32 45 C G - - MP 168 167 6 172 4 2 2 30 53 -2.000 -7.473 -0.459 -5.887 -4.226 -4.180 -3.997 -0.348 -2.752 -4.477 3.210 -3.522 -4.009 -0.145 -4.345 -2.126 1.733 -4.313 -0.410 -2.841 ML 169 167 6 172 4 1 1 28 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 4 1 1 27 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 171 167 6 172 4 0 0 26 49 -4.568 -4.250 -2.265 -0.520 IL 172 172 5 172 4 1 1 30 53 -1.158 -2.118 -1.681 -6.725 0.000 0.000 0.000 0.000 IR 173 173 6 173 3 1 1 24 42 -1.842 -0.560 -4.542 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - c - - - ML 174 173 6 176 3 1 1 21 40 -8.262 -0.017 -6.916 -0.045 0.601 -1.344 0.164 D 175 173 6 176 3 0 0 21 39 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - A - - - ML 177 176 3 179 3 1 1 20 39 -8.262 -0.017 -6.916 1.821 -2.975 -2.548 -2.579 D 178 176 3 179 3 0 0 20 38 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - U - - - ML 180 179 3 182 3 1 1 19 37 -8.262 -0.017 -6.916 -2.051 -1.951 -2.807 1.747 D 181 179 3 182 3 0 0 18 37 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - u - - - ML 183 182 3 185 3 1 1 18 36 -8.262 -0.017 -6.916 -0.462 0.181 -0.552 0.544 D 184 182 3 185 3 0 0 17 36 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - u - - - ML 186 185 3 188 3 1 1 16 35 -2.913 -0.219 -6.916 -0.373 -0.321 0.097 0.441 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 17 35 -1.895 -0.536 -4.596 0.000 0.000 0.000 0.000 [ MATL 44 ] 41 - u - - - ML 189 188 3 191 3 1 1 15 33 -8.262 -0.017 -6.916 -0.111 -0.235 -1.290 0.860 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - a - - - ML 192 191 3 194 3 1 1 13 31 -8.262 -0.017 -6.916 0.809 -1.054 -0.351 -0.026 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - u - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 0.421 -0.909 -0.393 0.451 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB11Cs5H3 ACC RF01544 DESC Trypanosomatid snoRNA TB11Cs5H3 LENG 65 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 08:21:23 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01544/CM NSEQ 5 EFFN 4.721680 CKSUM 425217780 STATS LOCAL MSV -7.9053 0.71923 STATS LOCAL VITERBI -8.9478 0.71923 STATS LOCAL FORWARD -3.8860 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.34191 1.48855 1.32533 1.39740 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 * 1 0.35680 1.90511 2.76935 2.42384 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 3.17469 4.08973 0.07918 4.04132 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 2.52779 0.83182 1.05817 1.98182 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 1.06737 1.30135 2.05349 1.36400 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 2.91378 0.47248 2.75859 1.35134 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 0.41762 3.66615 1.26644 3.38193 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 1.74727 3.28000 0.29476 3.13706 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 8 2.51923 1.73398 2.36462 0.43246 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 9 2.38299 1.72854 2.25488 0.46953 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 3.86170 0.07532 4.38131 3.24378 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 3.53883 4.50815 0.05915 4.05292 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 0.06182 4.11006 3.76157 3.89727 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 0.06182 4.11006 3.76157 3.89727 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 3.53883 4.50815 0.05915 4.05292 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 15 3.53883 4.50815 0.05915 4.05292 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.37595 1.20574 4.27667 0.09031 2.44936 1.09861 0.40547 16 4.14815 0.09375 4.01904 2.88730 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 17 4.14341 0.09394 4.01630 2.88637 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.19548 4.27667 1.80988 1.46634 0.26236 1.09861 0.40547 18 1.61947 3.00709 0.36261 2.86996 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03322 4.11440 4.11440 1.46634 0.26236 2.62355 0.07531 19 2.02083 2.28225 1.69861 0.54049 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.03322 4.11440 4.11440 1.46634 0.26236 2.62355 0.07531 20 2.55505 0.63315 2.48751 1.17676 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03322 4.11440 4.11440 1.46634 0.26236 2.62355 0.07531 21 0.19659 3.31190 2.30675 3.15965 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.42256 1.11385 4.11440 1.11206 0.39881 0.15676 1.93040 22 2.42494 1.13367 2.99721 0.61667 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 2.64036 1.31360 2.48484 0.55082 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 2.21163 1.04349 2.09105 0.88021 28 u - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 1.58624 1.79213 0.64690 2.25347 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 3.63216 2.04681 3.51221 0.20510 30 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 27 0.58722 2.32716 2.08859 1.50194 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 28 3.21967 0.41210 3.01297 1.39180 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.34674 1.27611 4.27667 0.72807 0.65940 1.09861 0.40547 29 1.47270 0.85087 2.56257 1.32222 35 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 30 0.06182 4.11006 3.76157 3.89727 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 31 3.45106 3.28261 3.99109 0.09181 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 32 1.88360 1.18209 1.77429 0.98963 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 33 1.80038 1.60545 1.23877 1.06647 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.19548 1.80988 4.27667 0.16184 1.90095 1.09861 0.40547 34 1.50966 1.54999 2.47187 0.72911 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 35 0.76194 2.28922 1.64082 1.43518 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 36 1.06706 2.16703 1.66441 1.04367 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.17114 1.94204 4.27667 0.18357 1.78554 1.09861 0.40547 37 1.52151 3.17526 0.37277 2.97564 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 38 1.59659 2.33406 2.15352 0.53711 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 39 2.64572 3.69204 0.13988 3.36216 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 40 2.49819 0.71906 1.68335 1.40730 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 41 0.96468 2.25956 1.16505 1.59657 49 a - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 42 0.84399 2.64466 1.15572 1.69202 50 a - - > 1.38629 1.38629 1.38629 1.38629 0.19548 1.80988 4.27667 0.16184 1.90095 1.09861 0.40547 43 3.44450 2.68250 3.22120 0.15108 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.34674 4.27667 1.27611 1.46634 0.26236 1.09861 0.40547 44 1.85317 2.49225 0.41300 2.31389 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.26564 1.54001 3.96847 1.39085 0.28617 0.09487 2.40228 45 2.96167 0.48236 2.79649 1.30963 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 46 3.17439 4.18740 0.07969 3.93282 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 47 3.18085 4.19859 0.07895 3.94499 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 48 3.45106 3.28261 3.99109 0.09181 62 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 49 3.45106 3.28261 3.99109 0.09181 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 50 3.86170 0.07532 4.38131 3.24377 64 C - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 51 0.06182 4.11006 3.76157 3.89727 65 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 52 0.06182 4.11006 3.76157 3.89727 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 53 0.06182 4.11006 3.76157 3.89727 67 A - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 54 1.16023 1.70371 0.93436 2.19158 68 g - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 55 1.09612 2.53393 0.93270 1.64508 69 g - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 56 3.36542 0.33321 3.09705 1.59135 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 57 3.57183 2.39527 3.44261 0.16397 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 58 2.24738 1.78313 0.41707 2.69953 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 59 1.51820 2.22116 1.18874 1.00019 73 u - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 60 2.23309 1.11555 0.77212 2.27267 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 61 4.22074 0.09530 3.96486 2.86042 75 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 62 1.37135 1.25815 1.63305 1.32154 76 c - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 63 0.06182 4.11006 3.76157 3.89727 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 64 3.53883 4.50815 0.05915 4.05292 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 65 0.06182 4.11006 3.76157 3.89727 79 A - - : 1.38629 1.38629 1.38629 1.38629 0.01418 4.26268 * 1.46634 0.26236 0.00000 * //