INFERNAL1/a [1.1.5 | Sep 2023] NAME TB11Cs5H2 ACC RF01543 DESC Trypanosomatid snoRNA TB11Cs5H2 STATES 208 NODES 53 CLEN 68 W 85 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 09:59:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01543/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.397461 CKSUM 3320576986 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.10 NC 42.70 EFP7GF -9.5107 0.71909 ECMLC 0.63581 -6.33611 2.66933 1600000 368007 0.003261 ECMGC 0.48234 -14.74918 -3.21989 1600000 104039 0.003845 ECMLI 0.66444 -4.40445 3.95896 1600000 310845 0.003860 ECMGI 0.51879 -10.28619 -0.16151 1600000 76427 0.005234 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 104 -7.128 -7.335 -0.047 -5.749 IL 1 1 2 1 4 1 22 88 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 21 85 104 -8.132 -0.018 -6.786 1.783 -2.712 -2.310 -2.289 D 4 2 3 5 3 0 17 83 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 21 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 1 20 84 103 -8.512 -0.017 -6.830 0.884 0.020 -1.214 -0.495 D 7 5 3 8 3 0 16 82 102 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 20 84 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 70 - A - - MR 9 8 3 11 3 1 19 83 102 -8.512 -0.017 -6.830 1.783 -2.712 -2.310 -2.289 D 10 8 3 11 3 0 14 81 101 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 19 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 69 - G - - MR 12 11 3 14 3 1 18 82 101 -8.512 -0.017 -6.830 -1.936 -3.208 1.793 -2.595 D 13 11 3 14 3 0 13 80 100 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 18 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 68 - A - - MR 15 14 3 17 3 1 17 81 100 -8.512 -0.017 -6.830 1.783 -2.712 -2.310 -2.289 D 16 14 3 17 3 0 12 79 99 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 67 - g - - MR 18 17 3 20 5 1 17 80 99 -7.241 -0.035 -7.056 -7.269 -8.160 0.487 -1.619 0.835 -1.034 D 19 17 3 20 5 0 11 78 98 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 15 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 66 G C - - MP 21 20 3 25 6 2 16 79 98 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -5.073 -3.254 -5.211 -0.025 -5.698 -4.820 -0.980 -5.472 -4.537 3.708 -4.852 -0.967 -1.357 -4.683 -3.036 -4.083 ML 22 20 3 25 6 1 12 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 10 78 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 8 76 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 14 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 78 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 65 C G - - MP 27 26 6 31 4 2 14 77 96 -7.128 -7.335 -0.047 -5.749 -4.920 -4.858 -4.546 -1.060 -3.187 -4.909 3.651 -4.034 -4.610 -0.866 -4.828 -2.811 0.286 -4.964 -0.905 -3.438 ML 28 26 6 31 4 1 11 77 97 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 9 76 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 7 75 95 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 13 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 12 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 5 - a - - - ML 33 32 6 35 3 1 13 74 94 -8.512 -0.017 -6.830 0.814 -0.988 -1.142 0.362 D 34 32 6 35 3 0 7 73 93 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 11 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 64 - g - - MR 36 35 3 38 5 1 12 73 93 -2.314 -0.356 -7.056 -7.269 -8.160 0.487 -1.619 0.835 -1.034 D 37 35 3 38 5 0 6 72 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 10 73 93 -3.090 -0.289 -6.602 -4.769 -5.875 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 62 G C - - MP 39 38 3 43 6 2 13 72 92 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -3.986 -2.696 -4.016 0.812 -4.766 -4.647 -0.196 -4.364 -3.920 3.160 -4.333 1.471 -0.470 -4.035 -2.170 -2.894 ML 40 38 3 43 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 7 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 3 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 8 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 61 C G - - MP 45 44 6 49 6 2 11 70 90 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -4.920 -4.858 -4.546 -1.060 -3.187 -4.909 3.651 -4.034 -4.610 -0.866 -4.828 -2.811 0.286 -4.964 -0.905 -3.438 ML 46 44 6 49 6 1 7 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 8 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 60 A U - - MP 51 50 6 55 6 2 10 68 88 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -4.103 -3.058 -4.095 3.501 -4.594 -5.690 -0.273 -4.116 -3.978 0.742 -4.541 -0.487 -0.689 -4.823 -2.212 -2.913 ML 52 50 6 55 6 1 6 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 7 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 7 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 59 U A - - MP 57 56 6 61 4 2 8 66 86 -7.128 -7.335 -0.047 -5.749 -4.598 -4.431 -4.390 -0.699 -3.249 -4.915 1.086 -3.971 -4.391 -0.498 -4.744 -2.317 3.492 -4.732 -0.915 -3.170 ML 58 56 6 61 4 1 5 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 3 66 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 2 65 85 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 7 68 88 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 6 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - C - - - ML 63 62 6 65 3 1 7 64 83 -8.132 -0.018 -6.786 -2.154 1.719 -2.985 -1.485 D 64 62 6 65 3 0 1 62 82 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 6 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - A - - - ML 66 65 3 68 3 1 6 63 82 -8.132 -0.018 -6.786 1.783 -2.712 -2.310 -2.289 D 67 65 3 68 3 0 1 61 81 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 5 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - G - - - ML 69 68 3 71 3 1 6 61 81 -8.132 -0.018 -6.786 -1.936 -3.208 1.793 -2.595 D 70 68 3 71 3 0 0 60 80 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - U - - - ML 72 71 3 74 3 1 5 60 80 -8.132 -0.018 -6.786 -1.802 -1.744 -2.550 1.698 D 73 71 3 74 3 0 0 59 79 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 75 74 3 77 3 1 4 59 79 -8.512 -0.017 -6.830 1.783 -2.712 -2.310 -2.289 D 76 74 3 77 3 0 0 58 77 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 2 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 58 - G - - MR 78 77 3 80 3 1 3 58 78 -8.512 -0.017 -6.830 -1.936 -3.208 1.793 -2.595 D 79 77 3 80 3 0 0 57 76 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - C - - MR 81 80 3 83 3 1 3 57 77 -8.512 -0.017 -6.830 -2.154 1.719 -2.985 -1.485 D 82 80 3 83 3 0 0 56 75 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - G - - MR 84 83 3 86 5 1 3 56 76 -7.241 -0.035 -7.056 -7.269 -8.160 -1.936 -3.208 1.793 -2.595 D 85 83 3 86 5 0 0 55 74 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 15 55 C G - - MP 87 86 3 91 6 2 4 55 75 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -4.920 -4.858 -4.546 -1.060 -3.187 -4.909 3.651 -4.034 -4.610 -0.866 -4.828 -2.811 0.286 -4.964 -0.905 -3.438 ML 88 86 3 91 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 16 54 A U - - MP 93 92 6 97 6 2 4 53 73 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -4.103 -3.058 -4.095 3.501 -4.594 -5.690 -0.273 -4.116 -3.978 0.742 -4.541 -0.487 -0.689 -4.823 -2.212 -2.913 ML 94 92 6 97 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 17 53 G C - - MP 99 98 6 103 6 2 3 51 71 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -5.073 -3.254 -5.211 -0.025 -5.698 -4.820 -0.980 -5.472 -4.537 3.708 -4.852 -0.967 -1.357 -4.683 -3.036 -4.083 ML 100 98 6 103 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 18 52 C G - - MP 105 104 6 109 6 2 3 49 69 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -4.920 -4.858 -4.546 -1.060 -3.187 -4.909 3.651 -4.034 -4.610 -0.866 -4.828 -2.811 0.286 -4.964 -0.905 -3.438 ML 106 104 6 109 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 49 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 19 51 G C - - MP 111 110 6 115 4 2 2 47 67 -7.128 -7.335 -0.047 -5.749 -3.996 -2.701 -4.025 0.805 -4.775 -4.645 -0.202 -4.375 -3.928 3.173 -4.339 1.441 -0.476 -4.037 -2.177 -2.904 ML 112 110 6 115 4 1 1 48 67 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 4 1 1 47 67 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 114 110 6 115 4 0 0 46 66 -4.568 -4.250 -2.265 -0.520 IL 115 115 5 115 4 1 1 49 69 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 116 116 6 116 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - g - - - ML 117 116 6 119 3 1 1 45 64 -8.132 -0.018 -6.786 0.487 -1.619 0.835 -1.034 D 118 116 6 119 3 0 0 44 63 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 21 - u - - - ML 120 119 3 122 3 1 1 44 63 -8.512 -0.017 -6.830 -0.017 0.189 -1.187 0.518 D 121 119 3 122 3 0 0 43 62 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 50 - C - - MR 123 122 3 125 3 1 1 43 62 -8.512 -0.017 -6.830 -1.126 1.188 -1.962 0.011 D 124 122 3 125 3 0 0 41 60 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 49 - u - - MR 126 125 3 128 3 1 1 42 61 -8.512 -0.017 -6.830 -0.859 0.256 -1.638 0.951 D 127 125 3 128 3 0 0 40 59 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 48 - u - - MR 129 128 3 131 5 1 1 41 60 -7.241 -0.035 -7.056 -7.269 -8.160 0.101 -0.903 0.116 0.389 D 130 128 3 131 5 0 0 39 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 22 47 g c - - MP 132 131 3 136 6 2 2 40 59 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -2.578 -2.109 -2.718 1.852 -2.885 -3.501 0.876 -3.041 -2.760 2.157 -0.205 0.702 0.647 -2.817 -0.828 -1.812 ML 133 131 3 136 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 46 g c - - MP 138 137 6 142 6 2 2 38 57 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -3.489 -2.763 -3.479 0.833 -3.281 -4.166 1.129 -3.604 -3.552 2.724 -3.978 -0.520 1.677 -3.540 -0.883 -2.409 ML 139 137 6 142 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 45 c g - - MP 144 143 6 148 6 2 2 36 55 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -3.974 -3.976 -3.778 -0.254 -2.607 -4.270 2.904 -3.364 -3.805 -0.068 -4.151 -2.025 0.977 -4.081 1.868 -2.674 ML 145 143 6 148 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 44 a u - - MP 150 149 6 154 6 2 2 34 53 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -2.895 -2.348 -2.986 2.250 -3.160 -3.888 0.830 -3.274 -3.048 2.137 -3.554 -0.173 0.559 -3.138 -0.984 0.192 ML 151 149 6 154 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 32 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 43 c g - - MP 156 155 6 160 6 2 2 32 51 -9.179 -9.118 -0.020 -7.895 -8.174 -8.569 -3.676 -3.640 -3.589 0.097 -2.571 -4.195 2.818 -3.267 -3.592 0.295 -4.004 -1.639 1.748 -3.837 1.005 -2.474 ML 157 155 6 160 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 42 C G - - MP 162 161 6 166 4 2 2 30 49 -7.128 -7.335 -0.047 -5.749 -4.920 -4.858 -4.546 -1.060 -3.187 -4.909 3.651 -4.034 -4.610 -0.866 -4.828 -2.811 0.286 -4.964 -0.905 -3.438 ML 163 161 6 166 4 1 1 30 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - u - - - ML 168 167 6 170 3 1 1 27 46 -8.132 -0.018 -6.786 0.091 -0.275 -0.430 0.451 D 169 167 6 170 3 0 0 26 45 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - c - - - ML 171 170 3 173 3 1 1 26 45 -8.132 -0.381 -2.128 -0.886 0.773 -1.697 0.527 D 172 170 3 173 3 0 0 25 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - u - - - ML 174 173 3 176 3 1 1 25 44 -7.774 -0.024 -6.428 0.228 -0.740 -1.024 0.798 D 175 173 3 176 3 0 0 23 42 -7.889 -3.402 -0.150 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - a - - - ML 177 176 3 179 3 1 1 24 43 -7.774 -0.024 -6.428 0.808 -0.851 -0.961 0.240 D 178 176 3 179 3 0 0 22 41 -7.889 -3.402 -0.150 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - a - - - ML 180 179 3 182 3 1 1 23 42 -7.774 -0.024 -6.428 0.808 -0.851 -0.961 0.240 D 181 179 3 182 3 0 0 21 40 -7.889 -3.402 -0.150 IL 182 182 3 182 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - g - - - ML 183 182 3 185 3 1 1 22 40 -2.709 -0.259 -6.428 0.346 -1.334 0.792 -0.733 D 184 182 3 185 3 0 0 20 38 -7.889 -0.340 -2.281 IL 185 185 3 185 3 1 1 22 41 -1.822 -0.570 -4.523 0.000 0.000 0.000 0.000 [ MATL 45 ] 35 - a - - - ML 186 185 3 188 3 1 1 20 39 -8.132 -0.018 -6.786 0.454 -1.007 0.203 -0.026 D 187 185 3 188 3 0 0 19 38 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 36 - C - - - ML 189 188 3 191 3 1 1 19 37 -8.132 -0.018 -6.786 -2.154 1.719 -2.985 -1.485 D 190 188 3 191 3 0 0 18 37 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 37 - u - - - ML 192 191 3 194 3 1 1 17 36 -8.132 -0.018 -6.786 0.075 0.069 -0.401 0.190 D 193 191 3 194 3 0 0 17 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 38 - c - - - ML 195 194 3 197 3 1 1 16 35 -8.132 -0.018 -6.786 -0.494 0.568 0.067 -0.395 D 196 194 3 197 3 0 0 16 34 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 39 - a - - - ML 198 197 3 200 3 1 1 15 33 -8.132 -0.018 -6.786 0.376 0.163 -1.109 0.162 D 199 197 3 200 3 0 0 15 33 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 40 - a - - - ML 201 200 3 203 3 1 1 13 31 -8.132 -0.018 -6.786 0.959 -1.539 0.264 -0.969 D 202 200 3 203 3 0 0 13 32 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 41 - U - - - ML 204 203 3 206 2 1 1 1 1 * 0.000 -1.802 -1.744 -2.550 1.698 D 205 203 3 206 2 0 0 0 0 * 0.000 IL 206 206 3 206 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 207 206 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB11Cs5H2 ACC RF01543 DESC Trypanosomatid snoRNA TB11Cs5H2 LENG 68 MAXL 150 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 09:59:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01543/CM NSEQ 5 EFFN 3.413086 CKSUM 3320576986 STATS LOCAL MSV -8.2469 0.71909 STATS LOCAL VITERBI -9.0059 0.71909 STATS LOCAL FORWARD -3.4696 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43496 1.34651 1.22270 1.57362 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 0.00000 * 1 0.09534 3.69421 3.37639 3.44519 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 2 0.70861 1.32863 2.39478 1.88627 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 3 2.88575 3.69222 0.11338 3.63204 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 4 3.68019 0.14856 3.50655 2.49094 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 5 0.76961 2.19435 2.30362 1.12245 5 a - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 6 2.20958 3.04928 0.23906 2.89157 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 7 3.66394 0.14964 3.49784 2.48786 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 8 0.19702 3.35089 2.25232 3.25398 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 9 3.52116 2.33486 3.33112 0.17691 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 10 3.39220 0.11816 3.95532 2.83601 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 11 0.09534 3.69421 3.37639 3.44519 11 A - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 12 3.15225 4.08418 0.08941 3.65208 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 13 3.04486 2.93709 3.57631 0.13766 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 14 0.09534 3.69421 3.37639 3.44519 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 15 3.68059 0.14853 3.50677 2.49102 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 16 0.19636 3.35580 2.25351 3.26049 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 17 2.88477 3.69086 0.11354 3.63019 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 18 3.67618 0.14882 3.50441 2.49019 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 19 2.21812 3.05728 0.23670 2.90151 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 20 1.02907 2.73601 0.72990 2.34470 20 g - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 21 1.42396 1.20248 2.32130 1.01986 21 u - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 22 1.27325 2.20471 0.73573 2.03530 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 23 2.12883 2.05501 0.70053 1.36021 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 24 3.02798 0.65889 2.82916 0.98057 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 25 0.99997 2.29627 1.08563 1.64098 25 a - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 26 2.66844 0.72234 2.44242 1.02702 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 27 3.67212 0.14909 3.50223 2.48942 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 28 1.33432 1.57691 1.68132 1.06734 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 29 2.20670 0.76273 2.79550 1.01484 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.33120 4.10628 1.32626 1.46634 0.26236 1.09861 0.40547 30 1.23435 1.98773 2.19760 0.77457 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04485 3.81994 3.81994 1.46634 0.26236 2.89698 0.05677 31 0.77730 2.05952 2.14664 1.21752 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04485 3.81994 3.81994 1.46634 0.26236 2.89698 0.05677 32 0.77730 2.05952 2.14664 1.21752 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04485 3.81994 3.81994 1.46634 0.26236 2.89698 0.05677 33 1.14950 2.47210 0.75157 2.06219 33 g - - _ 1.38629 1.38629 1.38629 1.38629 0.24657 1.62661 3.81994 0.20986 1.66440 0.11696 2.20384 34 1.06014 2.18207 1.20090 1.42768 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 35 3.39220 0.11816 3.95532 2.83601 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 36 1.35450 1.29859 1.66164 1.27590 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 37 1.89707 0.89088 1.28641 1.81134 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 38 1.11128 1.22197 2.26234 1.30156 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 39 0.66196 2.67982 1.15422 2.29977 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 40 3.04486 2.93709 3.57631 0.13766 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 41 2.76992 3.66794 0.12813 3.44002 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 42 1.48285 2.61212 0.49089 2.43556 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 43 2.38295 1.21784 2.10322 0.71378 44 u - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 44 2.17356 2.99095 0.25546 2.78991 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 45 1.47543 0.76590 1.88448 1.86759 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 46 2.27050 1.17314 1.60514 0.95067 47 u - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 47 1.33535 2.10406 1.26260 1.10245 48 u - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 48 2.18241 1.15966 2.73896 0.67531 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 49 2.42770 0.46635 3.03602 1.44203 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 50 3.13031 0.50821 2.86879 1.21081 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 51 2.77238 3.67180 0.12768 3.44437 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 52 3.81509 0.13593 3.53996 2.57642 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 53 3.48983 2.60204 3.16667 0.15873 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 54 2.78051 3.68458 0.12622 3.45879 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 55 3.15225 4.08418 0.08941 3.65208 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 56 3.39220 0.11816 3.95532 2.83601 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 57 3.15225 4.08418 0.08941 3.65208 58 G - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 58 0.20113 3.51873 2.16990 3.26048 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 59 3.45767 2.59665 3.15245 0.16108 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 60 2.75759 3.64869 0.13038 3.41837 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 61 3.09140 0.52135 2.84950 1.19412 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.33120 1.32626 4.10628 0.11976 2.18151 1.09861 0.40547 62 1.02907 2.73601 0.72990 2.34470 64 g - - - 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 63 2.77681 3.67876 0.12689 3.45222 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 64 3.83584 0.13475 3.54988 2.58021 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 65 1.02907 2.73601 0.72990 2.34470 67 g - - : 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 66 0.09534 3.69421 3.37639 3.44519 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 67 3.15225 4.08418 0.08941 3.65208 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.03349 4.10628 4.10628 1.46634 0.26236 1.09861 0.40547 68 0.09534 3.69421 3.37639 3.44519 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.01689 4.08968 * 1.46634 0.26236 0.00000 * //