INFERNAL1/a [1.1.4 | Dec 2020] NAME TB11Cs4H2 ACC RF01540 DESC Trypanosomatid snoRNA TB11Cs4H2 STATES 196 NODES 50 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:27:00 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.674805 CKSUM 2923805416 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 55.30 NC 37.60 EFP7GF -9.8641 0.71912 ECMLC 0.62757 -6.38505 2.92341 1600000 413225 0.002904 ECMGC 0.41919 -17.05949 -3.78832 1600000 104261 0.003837 ECMLI 0.62282 -4.52723 4.33896 1600000 300184 0.003998 ECMGI 0.46228 -12.18736 -0.68437 1600000 81559 0.004904 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 99 -7.225 -7.432 -0.044 -5.846 IL 1 1 2 1 4 1 21 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 20 80 99 -8.223 -0.017 -6.877 1.352 -1.783 -0.426 -1.274 D 4 2 3 5 3 0 15 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 20 79 98 -8.598 -0.016 -6.916 1.089 -0.243 -1.318 -0.674 D 7 5 3 8 3 0 14 77 97 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 18 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - A - - MR 9 8 3 11 3 1 19 78 97 -8.598 -0.016 -6.916 1.811 -2.897 -2.477 -2.493 D 10 8 3 11 3 0 12 76 95 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 18 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - G - - MR 12 11 3 14 3 1 18 77 96 -8.598 -0.016 -6.916 -2.123 -3.419 1.821 -2.806 D 13 11 3 14 3 0 11 75 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 17 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - A - - MR 15 14 3 17 3 1 17 76 95 -8.598 -0.016 -6.916 1.811 -2.897 -2.477 -2.493 D 16 14 3 17 3 0 10 74 94 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 16 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 62 - G - - MR 18 17 3 20 5 1 17 75 94 -7.322 -0.033 -7.137 -7.349 -8.241 -0.671 -1.396 1.010 -0.031 D 19 17 3 20 5 0 9 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 14 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 61 G C - - MP 21 20 3 25 6 2 17 74 93 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 22 20 3 25 6 1 11 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 11 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 7 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 60 G C - - MP 27 26 6 31 6 2 15 72 91 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 28 26 6 31 6 1 11 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 7 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 59 a u - - MP 33 32 6 37 6 2 13 70 89 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -1.857 -1.877 -2.037 1.708 -2.040 -0.927 1.303 -2.374 -2.104 1.429 -2.642 -0.337 1.128 0.220 -0.207 -1.263 ML 34 32 6 37 6 1 10 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 6 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 58 G C - - MP 39 38 6 43 4 2 11 68 87 -7.225 -7.432 -0.044 -5.846 -4.263 -2.865 -4.272 1.305 -4.987 -4.679 -0.327 -4.650 -4.144 3.400 -4.516 -0.498 -0.626 -4.159 -2.333 -3.163 ML 40 38 6 43 4 1 9 68 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 7 68 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 6 67 86 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 10 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 7 - U - - - ML 45 44 6 47 3 1 10 65 85 -8.598 -0.016 -6.916 -0.961 0.160 -1.740 1.050 D 46 44 6 47 3 0 5 64 83 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - u - - MR 48 47 3 50 5 1 9 64 84 -7.322 -0.033 -7.137 -7.349 -8.241 0.067 -0.919 0.018 0.497 D 49 47 3 50 5 0 4 63 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 7 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 56 G C - - MP 51 50 3 55 4 2 8 63 82 -7.225 -7.432 -0.044 -5.846 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 52 50 3 55 4 1 5 64 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 4 1 3 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 3 55 4 0 1 62 82 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 6 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 6 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - C - - - ML 57 56 6 59 3 1 7 61 80 -8.223 -0.017 -6.877 -1.274 1.269 -2.124 -0.080 D 58 56 6 59 3 0 1 59 79 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 5 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - a - - - ML 60 59 3 62 3 1 6 60 79 -8.223 -0.017 -6.877 0.886 -0.407 -1.153 -0.076 D 61 59 3 62 3 0 1 58 78 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 5 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - U - - - ML 63 62 3 65 3 1 6 59 78 -8.223 -0.017 -6.877 -1.976 -1.889 -2.731 1.733 D 64 62 3 65 3 0 0 57 77 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - U - - - ML 66 65 3 68 3 1 5 58 77 -8.223 -0.017 -6.877 -1.976 -1.889 -2.731 1.733 D 67 65 3 68 3 0 0 56 76 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - G - - - ML 69 68 3 71 3 1 4 56 75 -8.223 -0.017 -6.877 -2.123 -3.419 1.821 -2.806 D 70 68 3 71 3 0 0 55 74 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 3 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 72 71 3 74 3 1 4 55 74 -8.223 -0.017 -6.877 1.811 -2.897 -2.477 -2.493 D 73 71 3 74 3 0 0 54 73 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 75 74 3 77 3 1 3 54 73 -8.598 -0.016 -6.916 -2.123 -3.419 1.821 -2.806 D 76 74 3 77 3 0 0 53 72 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 2 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 55 - g - - MR 78 77 3 80 3 1 3 53 72 -8.598 -0.016 -6.916 0.661 -1.660 0.705 -1.081 D 79 77 3 80 3 0 0 52 71 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 54 - A - - MR 81 80 3 83 3 1 2 52 71 -8.598 -0.016 -6.916 1.361 -1.792 -0.451 -1.285 D 82 80 3 83 3 0 0 51 70 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 53 - C - - MR 84 83 3 86 3 1 2 51 70 -8.598 -0.016 -6.916 -2.377 1.759 -3.208 -1.665 D 85 83 3 86 3 0 0 50 69 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 52 - U - - MR 87 86 3 89 3 1 2 50 69 -8.598 -0.016 -6.916 -1.976 -1.889 -2.731 1.733 D 88 86 3 89 3 0 0 49 68 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 51 - A - - MR 90 89 3 92 3 1 1 49 68 -8.598 -0.016 -6.916 1.811 -2.897 -2.477 -2.493 D 91 89 3 92 3 0 0 48 67 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 50 - C - - MR 93 92 3 95 3 1 1 48 67 -8.598 -0.016 -6.916 -2.377 1.759 -3.208 -1.665 D 94 92 3 95 3 0 0 47 66 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - G - - MR 96 95 3 98 5 1 1 47 66 -7.322 -0.033 -7.137 -7.349 -8.241 -2.123 -3.419 1.821 -2.806 D 97 95 3 98 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 48 u a - - MP 99 98 3 103 6 2 2 46 65 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -0.276 -2.201 -2.326 1.611 -2.186 -3.171 1.486 -2.570 -2.377 1.181 -2.929 -0.539 1.898 -2.469 -0.218 -1.487 ML 100 98 3 103 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 47 C G - - MP 105 104 6 109 6 2 2 44 63 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.123 -5.077 -4.712 -1.267 -3.317 -5.048 3.695 -4.184 -4.787 -1.095 -4.980 -3.037 0.132 -5.152 -1.043 -3.609 ML 106 104 6 109 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 46 C G - - MP 111 110 6 115 6 2 2 42 61 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.123 -5.077 -4.712 -1.267 -3.317 -5.048 3.695 -4.184 -4.787 -1.095 -4.980 -3.037 0.132 -5.152 -1.043 -3.609 ML 112 110 6 115 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 19 45 C G - - MP 117 116 6 121 6 2 2 40 59 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -4.129 -4.130 -3.908 -0.372 -2.691 -4.381 3.068 -3.460 -3.932 -0.194 -4.267 -2.159 0.899 -4.223 1.628 -2.788 ML 118 116 6 121 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 20 44 A U - - MP 123 122 6 127 6 2 2 38 57 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -4.279 -3.195 -4.252 3.574 -4.849 -5.969 -0.515 -4.260 -4.135 0.550 -4.706 -0.601 -0.929 -5.066 -2.453 -3.065 ML 124 122 6 127 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 43 C G - - MP 129 128 6 133 4 2 2 36 55 -7.121 -8.366 -0.067 -4.820 -3.700 -3.695 -3.612 -0.097 -2.635 -4.194 3.136 0.484 -3.631 0.055 -4.030 -1.796 0.954 -3.875 -0.360 -2.555 ML 130 128 6 133 4 1 1 36 55 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 35 54 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 33 52 -12.737 -14.007 -2.036 -0.404 IL 133 133 5 133 4 1 1 36 55 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 42 - c - - MR 135 134 6 137 5 1 1 34 53 -7.322 -0.033 -7.137 -7.349 -8.241 0.008 0.627 -0.637 -0.309 D 136 134 6 137 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 22 41 C G - - MP 138 137 3 142 6 2 2 33 52 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -4.194 -4.186 -3.956 -0.403 -2.711 -4.417 3.219 -3.488 -3.979 -0.219 -4.305 -2.195 0.884 -4.277 1.162 -2.825 ML 139 137 3 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 23 40 G C - - MP 144 143 6 148 6 2 2 31 50 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 145 143 6 148 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 24 39 C G - - MP 150 149 6 154 6 2 2 29 48 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.123 -5.077 -4.712 -1.267 -3.317 -5.048 3.695 -4.184 -4.787 -1.095 -4.980 -3.037 0.132 -5.152 -1.043 -3.609 ML 151 149 6 154 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 25 38 c g - - MP 156 155 6 160 6 2 2 27 46 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -2.718 -2.758 -2.823 0.628 -2.348 -3.604 2.472 -2.865 -2.850 0.790 -3.367 -1.003 1.885 -0.413 -0.197 -1.882 ML 157 155 6 160 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 26 37 c g - - MP 162 161 6 166 4 2 2 25 44 -7.225 -7.432 -0.239 -2.838 -3.049 -3.120 -3.101 0.351 0.826 -3.826 2.357 -3.022 -3.121 0.436 -3.608 -1.341 1.728 -3.298 0.760 -2.118 ML 163 161 6 166 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 27 - C - - - ML 168 167 6 170 3 1 1 22 41 -8.047 -0.019 -6.701 -1.943 1.674 -2.772 -1.316 D 169 167 6 170 3 0 0 21 40 -7.360 -0.521 -1.751 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - c - - - ML 171 170 3 173 3 1 1 21 40 -8.223 -0.196 -3.015 -0.390 0.245 -0.070 0.136 D 172 170 3 173 3 0 0 21 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 29 - C - - - ML 174 173 3 176 3 1 1 20 39 -3.222 -0.179 -6.701 -0.971 1.071 -1.792 0.138 D 175 173 3 176 3 0 0 20 38 -0.820 -2.873 -1.751 IL 176 176 3 176 3 1 1 20 39 -2.096 -0.454 -4.796 0.000 0.000 0.000 0.000 [ MATL 43 ] 31 - A - - - ML 177 176 3 179 3 1 1 19 37 -8.223 -0.017 -6.877 1.361 -1.792 -0.451 -1.285 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 32 - c - - - ML 180 179 3 182 3 1 1 17 36 -8.223 -0.017 -6.877 0.040 0.231 -0.556 0.162 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 33 - c - - - ML 183 182 3 185 3 1 1 16 35 -8.223 -0.017 -6.877 -0.122 0.740 -1.401 0.046 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 34 - a - - - ML 186 185 3 188 3 1 1 15 33 -8.223 -0.017 -6.877 0.833 -1.053 -0.367 -0.057 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 35 - g - - - ML 189 188 3 191 3 1 1 13 31 -8.223 -0.017 -6.877 -0.564 -0.209 0.874 -0.677 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 36 - U - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.976 -1.889 -2.731 1.733 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME TB11Cs4H2 ACC RF01540 DESC Trypanosomatid snoRNA TB11Cs4H2 LENG 64 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:27:00 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 6 EFFN 3.741211 CKSUM 2923805416 STATS LOCAL MSV -8.0880 0.71912 STATS LOCAL VITERBI -8.7584 0.71912 STATS LOCAL FORWARD -3.6542 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52561 1.25657 1.21000 1.61101 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 0.00000 * 1 0.38629 2.87003 1.68592 2.54524 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 2 0.56062 1.53528 2.48419 2.03748 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 3 2.96562 3.80514 0.10244 3.74717 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 4 2.96489 3.80408 0.10255 3.74574 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 5 1.31385 1.56041 1.48801 1.21961 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 6 1.77991 3.11127 0.30668 2.97751 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 7 2.26342 1.23987 2.81804 0.60356 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 8 2.96576 3.80533 0.10242 3.74744 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 9 2.53792 0.41930 3.15433 1.51053 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 10 0.71825 1.67658 2.30826 1.48745 10 a - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 11 3.15841 3.03287 3.69258 0.12282 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 12 3.15841 3.03287 3.69258 0.12282 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 13 3.26300 4.20611 0.07931 3.76923 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 14 0.08435 3.81086 3.48354 3.57320 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 15 3.26300 4.20611 0.07931 3.76923 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 16 1.22865 1.65619 1.69640 1.09930 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 17 3.80793 0.13091 3.64769 2.59750 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 18 3.80575 0.13104 3.64649 2.59709 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 19 3.10645 0.54487 2.90959 1.13686 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 20 0.17095 3.50647 2.36645 3.40151 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 21 2.95803 0.30274 2.76684 1.92123 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 22 3.09866 0.43845 2.90732 1.36557 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 23 2.95452 3.78914 0.10405 3.72553 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 24 3.79002 0.13196 3.63785 2.59406 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 25 2.24964 0.91235 2.06175 1.00579 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 26 2.46817 0.73970 2.30015 1.08543 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.17412 4.16772 1.93574 1.46634 0.26236 1.09861 0.40547 27 3.20627 0.14138 3.77792 2.68149 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03620 4.02981 4.02981 1.46634 0.26236 0.19444 1.73328 28 1.76001 1.15753 1.39720 1.32274 28 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 29 2.27748 0.54868 2.87312 1.33474 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.14303 2.13888 4.16772 0.24496 1.52663 1.09861 0.40547 30 0.37948 2.87662 1.70555 2.55383 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 31 1.38214 1.17659 1.78420 1.29939 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 32 1.51759 0.79052 2.51858 1.40008 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 33 0.76707 2.21848 1.65019 1.44886 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 34 1.96145 1.51226 0.66983 2.06246 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 35 3.15841 3.03287 3.69258 0.12282 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 36 1.02793 2.47091 0.79163 2.25725 37 g - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 37 1.30843 1.83295 0.82008 2.04471 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 38 2.87768 3.80916 0.11263 3.57234 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 39 3.91514 0.12369 3.65280 2.65234 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 40 2.23694 3.07954 0.23449 2.87779 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 41 1.41636 0.87158 1.85341 1.70149 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 42 2.19442 2.93487 0.41026 1.76048 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 43 3.61810 2.72587 3.31284 0.13781 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 44 2.23204 3.07064 0.23649 2.86642 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 45 2.88138 3.81513 0.11205 3.57899 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 46 2.88435 3.81993 0.11158 3.58433 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 47 1.07728 1.86848 1.46624 1.29342 48 a - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 48 3.26300 4.20611 0.07931 3.76923 49 G - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 49 3.52783 0.10374 4.08168 2.95086 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 50 0.08435 3.81086 3.48354 3.57320 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 51 3.15841 3.03287 3.69258 0.12282 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 52 3.52783 0.10374 4.08168 2.95086 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 53 0.37948 2.87662 1.70555 2.55383 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 54 0.89274 2.76974 0.83113 2.38345 55 g - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 55 3.94504 0.12217 3.66736 2.65775 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 56 1.35879 2.11594 1.33894 1.02058 57 u - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 57 3.20956 0.34975 2.92941 1.60280 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 58 1.77221 1.16889 1.53205 1.19323 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 59 3.93060 0.12289 3.66036 2.65515 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 60 3.94489 0.12217 3.66729 2.65773 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 61 2.03218 2.55133 0.58901 1.44352 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 62 0.08435 3.81086 3.48354 3.57320 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 63 3.26300 4.20611 0.07931 3.76923 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 64 0.08435 3.81086 3.48354 3.57320 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.01586 4.15212 * 1.46634 0.26236 0.00000 * //