INFERNAL1/a [1.1.5 | Sep 2023] NAME TB11Cs4H2 ACC RF01540 DESC Trypanosomatid snoRNA TB11Cs4H2 STATES 196 NODES 50 CLEN 64 W 80 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 21:06:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01540/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.674805 CKSUM 2923805416 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 56.80 NC 40.40 EFP7GF -9.8641 0.71912 ECMLC 0.62877 -6.36721 2.92684 1600000 414130 0.002898 ECMGC 0.41940 -17.05648 -3.78816 1600000 104416 0.003831 ECMLI 0.62302 -4.52582 4.33896 1600000 300433 0.003994 ECMGI 0.46106 -12.22659 -0.69058 1600000 81658 0.004898 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 80 99 -7.225 -7.432 -0.044 -5.846 IL 1 1 2 1 4 1 21 84 104 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 20 80 99 -8.223 -0.017 -6.877 1.357 -1.788 -0.440 -1.280 D 4 2 3 5 3 0 15 78 98 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 20 79 98 -8.598 -0.016 -6.916 1.083 -0.233 -1.316 -0.670 D 7 5 3 8 3 0 14 77 97 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 18 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 65 - A - - MR 9 8 3 11 3 1 19 78 97 -8.598 -0.016 -6.916 1.811 -2.897 -2.477 -2.493 D 10 8 3 11 3 0 12 76 95 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 18 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 64 - G - - MR 12 11 3 14 3 1 18 77 96 -8.598 -0.016 -6.916 -2.123 -3.419 1.821 -2.806 D 13 11 3 14 3 0 11 75 94 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 17 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 63 - A - - MR 15 14 3 17 3 1 17 76 95 -8.598 -0.016 -6.916 1.811 -2.897 -2.477 -2.493 D 16 14 3 17 3 0 10 74 94 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 16 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 62 - G - - MR 18 17 3 20 5 1 17 75 94 -7.322 -0.033 -7.137 -7.349 -8.241 -0.666 -1.389 1.001 -0.020 D 19 17 3 20 5 0 9 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 14 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 61 G C - - MP 21 20 3 25 6 2 16 74 93 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 22 20 3 25 6 1 11 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 11 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 7 70 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 13 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 60 G C - - MP 27 26 6 31 6 2 15 72 91 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 28 26 6 31 6 1 11 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 10 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 7 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 12 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 12 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 59 a u - - MP 33 32 6 37 6 2 13 70 89 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -1.856 -1.877 -2.037 1.708 -2.039 -0.916 1.303 -2.373 -2.103 1.428 -2.642 -0.336 1.128 0.217 -0.207 -1.263 ML 34 32 6 37 6 1 10 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 6 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 58 G C - - MP 39 38 6 43 4 2 11 68 87 -7.225 -7.432 -0.044 -5.846 -4.271 -2.869 -4.281 1.293 -4.997 -4.681 -0.335 -4.659 -4.149 3.405 -4.521 -0.502 -0.634 -4.165 -2.341 -3.171 ML 40 38 6 43 4 1 9 68 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 7 68 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 6 67 86 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 10 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 7 - U - - - ML 45 44 6 47 3 1 9 65 85 -8.598 -0.016 -6.916 -0.959 0.170 -1.739 1.043 D 46 44 6 47 3 0 5 64 83 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - u - - MR 48 47 3 50 5 1 9 64 84 -7.322 -0.033 -7.137 -7.349 -8.241 0.062 -0.921 0.027 0.495 D 49 47 3 50 5 0 4 63 83 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 7 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 56 G C - - MP 51 50 3 55 4 2 8 63 82 -7.225 -7.432 -0.044 -5.846 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 52 50 3 55 4 1 5 64 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 4 1 3 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 3 55 4 0 1 62 82 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 6 65 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 6 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - C - - - ML 57 56 6 59 3 1 7 61 80 -8.223 -0.017 -6.877 -1.269 1.265 -2.118 -0.072 D 58 56 6 59 3 0 1 59 79 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 5 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - a - - - ML 60 59 3 62 3 1 6 60 79 -8.223 -0.017 -6.877 0.879 -0.400 -1.151 -0.069 D 61 59 3 62 3 0 1 58 78 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 5 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - U - - - ML 63 62 3 65 3 1 6 59 78 -8.223 -0.017 -6.877 -1.976 -1.889 -2.731 1.733 D 64 62 3 65 3 0 0 57 77 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 4 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - U - - - ML 66 65 3 68 3 1 5 58 77 -8.223 -0.017 -6.877 -1.976 -1.889 -2.731 1.733 D 67 65 3 68 3 0 0 56 76 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 3 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - G - - - ML 69 68 3 71 3 1 4 56 75 -8.223 -0.017 -6.877 -2.123 -3.419 1.821 -2.806 D 70 68 3 71 3 0 0 55 74 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 3 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - A - - - ML 72 71 3 74 3 1 4 55 74 -8.223 -0.017 -6.877 1.811 -2.897 -2.477 -2.493 D 73 71 3 74 3 0 0 54 73 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - G - - - ML 75 74 3 77 3 1 3 54 73 -8.598 -0.016 -6.916 -2.123 -3.419 1.821 -2.806 D 76 74 3 77 3 0 0 53 72 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 2 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 55 - g - - MR 78 77 3 80 3 1 3 53 72 -8.598 -0.016 -6.916 0.659 -1.661 0.707 -1.082 D 79 77 3 80 3 0 0 52 71 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 1 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 54 - A - - MR 81 80 3 83 3 1 2 52 71 -8.598 -0.016 -6.916 1.358 -1.789 -0.442 -1.281 D 82 80 3 83 3 0 0 51 70 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 53 - C - - MR 84 83 3 86 3 1 2 51 70 -8.598 -0.016 -6.916 -2.377 1.759 -3.208 -1.665 D 85 83 3 86 3 0 0 50 69 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 52 - U - - MR 87 86 3 89 3 1 2 50 69 -8.598 -0.016 -6.916 -1.976 -1.889 -2.731 1.733 D 88 86 3 89 3 0 0 49 68 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 51 - A - - MR 90 89 3 92 3 1 1 49 68 -8.598 -0.016 -6.916 1.811 -2.897 -2.477 -2.493 D 91 89 3 92 3 0 0 48 67 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 50 - C - - MR 93 92 3 95 3 1 1 48 67 -8.598 -0.016 -6.916 -2.377 1.759 -3.208 -1.665 D 94 92 3 95 3 0 0 47 66 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 49 - G - - MR 96 95 3 98 5 1 1 47 66 -7.322 -0.033 -7.137 -7.349 -8.241 -2.123 -3.419 1.821 -2.806 D 97 95 3 98 5 0 0 46 65 -5.352 -0.707 -2.978 -4.409 -2.404 IR 98 98 3 98 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 48 u a - - MP 99 98 3 103 6 2 2 46 65 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -0.292 -2.201 -2.327 1.616 -2.187 -3.172 1.486 -2.570 -2.378 1.183 -2.930 -0.539 1.896 -2.470 -0.219 -1.488 ML 100 98 3 103 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 3 103 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 3 103 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 47 C G - - MP 105 104 6 109 6 2 2 44 63 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.123 -5.077 -4.712 -1.267 -3.317 -5.048 3.695 -4.184 -4.787 -1.095 -4.980 -3.037 0.132 -5.152 -1.043 -3.609 ML 106 104 6 109 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 46 C G - - MP 111 110 6 115 6 2 2 42 61 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.123 -5.077 -4.712 -1.267 -3.317 -5.048 3.695 -4.184 -4.787 -1.095 -4.980 -3.037 0.132 -5.152 -1.043 -3.609 ML 112 110 6 115 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 19 45 C G - - MP 117 116 6 121 6 2 2 40 59 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -4.130 -4.131 -3.908 -0.371 -2.691 -4.382 3.071 -3.460 -3.932 -0.193 -4.267 -2.159 0.899 -4.223 1.620 -2.788 ML 118 116 6 121 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 20 44 A U - - MP 123 122 6 127 6 2 2 38 57 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -4.279 -3.195 -4.252 3.574 -4.849 -5.969 -0.515 -4.260 -4.135 0.550 -4.706 -0.601 -0.929 -5.066 -2.453 -3.065 ML 124 122 6 127 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 43 C G - - MP 129 128 6 133 4 2 2 36 55 -7.121 -8.366 -0.067 -4.820 -3.699 -3.694 -3.611 -0.096 -2.634 -4.193 3.134 0.499 -3.630 0.055 -4.029 -1.796 0.954 -3.873 -0.360 -2.554 ML 130 128 6 133 4 1 1 36 55 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 35 54 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 33 52 -12.737 -14.007 -2.036 -0.404 IL 133 133 5 133 4 1 1 36 55 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 42 - c - - MR 135 134 6 137 5 1 1 34 53 -7.322 -0.033 -7.137 -7.349 -8.241 -0.000 0.630 -0.632 -0.309 D 136 134 6 137 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 137 137 3 137 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 22 41 C G - - MP 138 137 3 142 6 2 2 33 52 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -4.197 -4.189 -3.958 -0.405 -2.712 -4.419 3.224 -3.489 -3.981 -0.221 -4.307 -2.198 0.882 -4.280 1.148 -2.827 ML 139 137 3 142 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 3 142 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 3 142 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 23 40 G C - - MP 144 143 6 148 6 2 2 31 50 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.249 -3.340 -5.414 -0.149 -5.943 -4.885 -1.181 -5.680 -4.643 3.739 -4.947 -1.063 -1.554 -4.796 -3.248 -4.283 ML 145 143 6 148 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 24 39 C G - - MP 150 149 6 154 6 2 2 29 48 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -5.123 -5.077 -4.712 -1.267 -3.317 -5.048 3.695 -4.184 -4.787 -1.095 -4.980 -3.037 0.132 -5.152 -1.043 -3.609 ML 151 149 6 154 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 25 38 c g - - MP 156 155 6 160 6 2 2 27 46 -9.220 -9.159 -0.020 -7.935 -8.215 -8.610 -2.717 -2.757 -2.822 0.627 -2.347 -3.603 2.472 -2.865 -2.849 0.789 -3.367 -1.003 1.881 -0.400 -0.198 -1.881 ML 157 155 6 160 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 26 37 c g - - MP 162 161 6 166 4 2 2 25 44 -7.225 -7.432 -0.235 -2.856 -3.052 -3.122 -3.102 0.347 0.843 -3.827 2.355 -3.023 -3.123 0.432 -3.609 -1.344 1.721 -3.300 0.769 -2.120 ML 163 161 6 166 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 28 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 27 - C - - - ML 168 167 6 170 3 1 1 22 41 -8.049 -0.019 -6.703 -1.950 1.676 -2.779 -1.321 D 169 167 6 170 3 0 0 21 40 -7.348 -0.526 -1.739 IL 170 170 3 170 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 28 - c - - - ML 171 170 3 173 3 1 1 21 40 -8.223 -0.193 -3.035 -0.390 0.242 -0.060 0.130 D 172 170 3 173 3 0 0 21 39 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 29 - C - - - ML 174 173 3 176 3 1 1 20 39 -3.259 -0.175 -6.703 -0.971 1.069 -1.793 0.142 D 175 173 3 176 3 0 0 20 38 -0.829 -2.861 -1.739 IL 176 176 3 176 3 1 1 20 39 -2.086 -0.457 -4.787 0.000 0.000 0.000 0.000 [ MATL 43 ] 31 - A - - - ML 177 176 3 179 3 1 1 19 37 -8.223 -0.017 -6.877 1.358 -1.789 -0.442 -1.281 D 178 176 3 179 3 0 0 18 37 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 32 - c - - - ML 180 179 3 182 3 1 1 17 36 -8.223 -0.017 -6.877 0.044 0.228 -0.550 0.156 D 181 179 3 182 3 0 0 17 36 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 33 - c - - - ML 183 182 3 185 3 1 1 16 35 -8.223 -0.017 -6.877 -0.133 0.755 -1.410 0.035 D 184 182 3 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 34 - a - - - ML 186 185 3 188 3 1 1 15 33 -8.223 -0.017 -6.877 0.835 -1.056 -0.361 -0.065 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 35 - g - - - ML 189 188 3 191 3 1 1 13 31 -8.223 -0.017 -6.877 -0.566 -0.215 0.879 -0.680 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 36 - U - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.976 -1.889 -2.731 1.733 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB11Cs4H2 ACC RF01540 DESC Trypanosomatid snoRNA TB11Cs4H2 LENG 64 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 21:06:49 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01540/CM NSEQ 6 EFFN 3.741211 CKSUM 2923805416 STATS LOCAL MSV -8.0601 0.71912 STATS LOCAL VITERBI -8.7590 0.71912 STATS LOCAL FORWARD -3.6533 0.71912 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.52647 1.25580 1.20969 1.61164 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 0.00000 * 1 0.38249 2.87367 1.69682 2.54999 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 2 0.56490 1.52721 2.48229 2.03338 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 3 2.96562 3.80514 0.10244 3.74717 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 4 2.96489 3.80408 0.10255 3.74574 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 5 1.31440 1.55867 1.48822 1.22019 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 6 1.78934 3.11723 0.30375 2.98373 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 7 2.26148 1.23161 2.81666 0.60848 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 8 2.96576 3.80533 0.10242 3.74744 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 9 2.53340 0.42242 3.14980 1.50376 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 10 0.72359 1.67054 2.30595 1.48201 10 a - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 11 3.15841 3.03287 3.69258 0.12282 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 12 3.15841 3.03287 3.69258 0.12282 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 13 3.26300 4.20611 0.07931 3.76923 13 G - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 14 0.08435 3.81086 3.48354 3.57320 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 15 3.26300 4.20611 0.07931 3.76923 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 16 1.22822 1.65630 1.69550 1.10010 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 17 3.80793 0.13091 3.64769 2.59750 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 18 3.80575 0.13104 3.64649 2.59709 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 19 3.10621 0.54271 2.90926 1.14087 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 20 0.17095 3.50647 2.36645 3.40151 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 21 2.95844 0.30263 2.76737 1.92142 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 22 3.09967 0.43563 2.90831 1.37235 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 23 2.95452 3.78914 0.10405 3.72553 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 24 3.79002 0.13196 3.63785 2.59406 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 25 2.25030 0.91147 2.06248 1.00632 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 26 2.47204 0.73723 2.30427 1.08673 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.17189 4.16772 1.94884 1.46634 0.26236 1.09861 0.40547 27 3.21148 0.14067 3.78296 2.68578 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03612 4.03196 4.03196 1.46634 0.26236 0.19677 1.72250 28 1.75984 1.15961 1.38902 1.32803 28 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 29 2.27765 0.55024 2.87347 1.33119 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.14019 2.16005 4.16772 0.24986 1.50918 1.09861 0.40547 30 0.38206 2.87409 1.69807 2.55054 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 31 1.37834 1.17873 1.77932 1.30349 32 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 32 1.52718 0.77974 2.52709 1.40880 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 33 0.76533 2.22095 1.64547 1.45504 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 34 1.96291 1.51732 0.66657 2.06525 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 35 3.15841 3.03287 3.69258 0.12282 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 36 1.02671 2.47495 0.79095 2.26111 37 g - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 37 1.31127 1.82972 0.81931 2.04540 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 38 2.87768 3.80916 0.11263 3.57234 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 39 3.91514 0.12369 3.65280 2.65234 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 40 2.23750 3.08053 0.23428 2.87879 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 41 1.42249 0.86907 1.85005 1.70200 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 42 2.19466 2.93540 0.41185 1.75404 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 43 3.61810 2.72587 3.31284 0.13781 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 44 2.23188 3.07033 0.23654 2.86617 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 45 2.88138 3.81513 0.11205 3.57899 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 46 2.88435 3.81993 0.11158 3.58433 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 47 1.08034 1.86749 1.46634 1.29010 48 a - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 48 3.26300 4.20611 0.07931 3.76923 49 G - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 49 3.52783 0.10374 4.08168 2.95086 50 C - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 50 0.08435 3.81086 3.48354 3.57320 51 A - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 51 3.15841 3.03287 3.69258 0.12282 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 52 3.52783 0.10374 4.08168 2.95086 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 53 0.38206 2.87409 1.69807 2.55054 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 54 0.89402 2.77002 0.82983 2.38372 55 g - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 55 3.94504 0.12217 3.66736 2.65775 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 56 1.36350 2.11720 1.33206 1.02183 57 u - - - 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 57 3.21546 0.34650 2.93554 1.61143 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 58 1.77207 1.16859 1.53192 1.19371 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 59 3.93060 0.12289 3.66036 2.65515 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 60 3.94489 0.12217 3.66729 2.65773 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 61 2.02772 2.54502 0.59499 1.43412 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 62 0.08435 3.81086 3.48354 3.57320 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 63 3.26300 4.20611 0.07931 3.76923 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03146 4.16772 4.16772 1.46634 0.26236 1.09861 0.40547 64 0.08435 3.81086 3.48354 3.57320 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.01586 4.15212 * 1.46634 0.26236 0.00000 * //