INFERNAL1/a [1.1.5 | Sep 2023] NAME TB10Cs4H4 ACC RF01534 DESC Trypanosomatid snoRNA TB10Cs4H4 STATES 202 NODES 50 CLEN 66 W 82 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 12:38:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01534/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.691406 CKSUM 2752011379 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 83.10 NC 48.00 EFP7GF -4.9092 0.72860 ECMLC 0.62991 -6.46891 2.95947 1600000 455472 0.002635 ECMGC 0.41360 -17.22159 -3.41660 1600000 120716 0.003314 ECMLI 0.61998 -4.80859 4.23193 1600000 326115 0.003680 ECMGI 0.46634 -11.71264 -0.21536 1600000 85229 0.004693 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.847 -7.054 -0.057 -5.468 IL 1 1 2 1 4 1 20 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 19 82 102 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 4 2 3 5 3 0 14 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 18 81 101 -8.268 -0.020 -6.585 1.675 -2.184 -1.835 -1.708 D 7 5 3 8 3 0 13 80 100 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 17 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 66 - A - - MR 9 8 3 11 3 1 17 80 100 -8.268 -0.020 -6.585 1.675 -2.184 -1.835 -1.708 D 10 8 3 11 3 0 11 78 98 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 65 - G - - MR 12 11 3 14 3 1 17 79 99 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 13 11 3 14 3 0 10 77 97 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 64 - A - - MR 15 14 3 17 3 1 16 78 98 -8.268 -0.020 -6.585 1.675 -2.184 -1.835 -1.708 D 16 14 3 17 3 0 9 76 96 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 63 - a - - MR 18 17 3 20 5 1 15 77 97 -7.012 -0.041 -6.828 -7.040 -7.931 0.687 -1.316 0.468 -0.725 D 19 17 3 20 5 0 9 76 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 13 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 62 G C - - MP 21 20 3 25 6 2 15 76 96 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 22 20 3 25 6 1 10 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 10 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 6 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 12 76 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 12 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 61 G C - - MP 27 26 6 31 6 2 13 74 94 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 28 26 6 31 6 1 9 73 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 9 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 5 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 11 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 11 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 60 A U - - MP 33 32 6 37 4 2 12 72 92 -6.772 -8.017 -0.086 -4.471 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 34 32 6 37 4 1 7 71 91 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 8 71 91 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 5 69 89 -12.737 -14.007 -2.036 -0.404 IL 37 37 5 37 4 1 9 71 91 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 10 72 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - U - - MR 39 38 6 41 5 1 11 70 90 -7.012 -0.041 -6.828 -7.040 -7.931 -1.315 -1.342 -2.039 1.566 D 40 38 6 41 5 0 5 69 88 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 8 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 58 g u - - MP 42 41 3 46 6 2 12 69 89 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.500 -2.315 -3.656 1.203 -4.277 -5.004 0.094 -3.696 -3.351 1.515 -3.866 2.949 -0.266 -4.235 -1.847 -2.383 ML 43 41 3 46 6 1 6 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 6 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 2 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 8 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 8 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 57 g c - - MP 48 47 6 52 6 2 11 67 87 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.461 -2.465 -3.497 2.030 -3.871 -4.335 0.523 -3.761 -3.486 2.816 -3.946 -0.095 0.207 -3.626 -1.435 -2.401 ML 49 47 6 52 6 1 6 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 2 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 7 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 56 c g - - MP 54 53 6 58 6 2 9 65 85 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.562 -3.480 -3.453 0.240 -2.435 -4.039 2.635 -3.132 -3.468 0.517 -3.864 -1.462 2.272 -3.706 -0.114 -2.344 ML 55 53 6 58 6 1 5 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 4 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 2 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 55 C G - - MP 60 59 6 64 4 2 7 63 83 -6.847 -7.054 -0.057 -5.468 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 61 59 6 64 4 1 4 63 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 3 63 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 2 62 82 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 6 64 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 10 - C - - - ML 66 65 6 68 3 1 6 61 80 -7.871 -0.022 -6.525 -1.517 1.558 -2.332 -0.976 D 67 65 6 68 3 0 1 59 79 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 5 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 11 - G - - - ML 69 68 3 71 3 1 6 59 79 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 70 68 3 71 3 0 1 58 78 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 4 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 12 - U - - - ML 72 71 3 74 3 1 5 58 78 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 73 71 3 74 3 0 0 57 77 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 13 - A - - - ML 75 74 3 77 3 1 4 57 77 -7.871 -0.022 -6.525 1.675 -2.184 -1.835 -1.708 D 76 74 3 77 3 0 0 56 76 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 3 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 14 - G - - - ML 78 77 3 80 3 1 4 56 76 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 79 77 3 80 3 0 0 55 75 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 3 57 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 54 - U - - MR 81 80 3 83 3 1 3 55 75 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 82 80 3 83 3 0 0 54 73 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - G - - MR 84 83 3 86 3 1 3 54 74 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 85 83 3 86 3 0 0 53 72 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 52 - G - - MR 87 86 3 89 3 1 3 53 73 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 88 86 3 89 3 0 0 52 71 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 51 - U - - MR 90 89 3 92 3 1 2 52 72 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 91 89 3 92 3 0 0 51 70 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 50 - G - - MR 93 92 3 95 5 1 2 51 71 -7.012 -0.041 -6.828 -7.040 -7.931 -1.381 -2.568 1.673 -1.954 D 94 92 3 95 5 0 0 50 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 15 49 C G - - MP 96 95 3 100 6 2 3 50 70 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 97 95 3 100 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 48 C G - - MP 102 101 6 106 6 2 3 48 68 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 103 101 6 106 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 47 A U - - MP 108 107 6 112 6 2 3 46 66 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 109 107 6 112 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 46 C G - - MP 114 113 6 118 6 2 2 44 64 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 115 113 6 118 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 19 45 g u - - MP 120 119 6 124 6 2 2 42 62 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.500 -2.315 -3.656 1.203 -4.277 -5.004 0.094 -3.696 -3.351 1.515 -3.866 2.949 -0.266 -4.235 -1.847 -2.383 ML 121 119 6 124 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 20 44 g c - - MP 126 125 6 130 6 2 2 40 60 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.599 -2.473 -3.656 1.039 -4.202 -4.429 0.226 -3.939 -3.576 2.939 -4.020 1.560 -0.063 -3.764 -1.726 -2.541 ML 127 125 6 130 6 1 1 39 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 39 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 40 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 21 43 c g - - MP 132 131 6 136 4 2 2 38 58 -6.847 -7.054 -0.057 -5.468 -3.562 -3.480 -3.453 0.240 -2.435 -4.039 2.635 -3.132 -3.468 0.517 -3.864 -1.462 2.272 -3.706 -0.114 -2.344 ML 133 131 6 136 4 1 1 39 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 38 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 37 57 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 40 60 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - a - - - ML 138 137 6 140 3 1 1 36 55 -8.268 -0.020 -6.585 0.687 -1.316 0.468 -0.725 D 139 137 6 140 3 0 0 35 54 -5.620 -0.734 -1.403 IL 140 140 3 140 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 42 - C - - MR 141 140 3 143 5 1 1 35 54 -7.012 -0.041 -6.828 -7.040 -7.931 -1.517 1.558 -2.332 -0.976 D 142 140 3 143 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 143 143 3 143 5 1 1 35 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 41 c g - - MP 144 143 3 148 4 2 2 34 53 -6.847 -7.054 -0.507 -1.835 -3.601 -3.579 -3.461 0.077 -2.400 -3.998 2.685 -3.122 -3.490 0.308 -3.862 -1.649 1.190 -3.734 1.858 -2.383 ML 145 143 3 148 4 1 1 34 54 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 4 1 1 34 53 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 3 148 4 0 0 33 52 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 36 55 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 24 - C - - - ML 150 149 6 152 3 1 1 31 51 -7.479 -0.029 -6.133 -0.673 1.137 -1.433 -0.316 D 151 149 6 152 3 0 0 29 48 -7.789 -3.302 -0.162 IL 152 152 3 152 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 25 - U - - - ML 153 152 3 155 3 1 1 30 49 -7.479 -0.029 -6.133 -0.656 -0.817 -1.327 1.262 D 154 152 3 155 3 0 0 28 48 -7.789 -3.302 -0.162 IL 155 155 3 155 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 26 - U - - - ML 156 155 3 158 5 1 1 29 48 -6.680 -0.052 -6.495 -6.707 -7.599 -0.656 -0.817 -1.327 1.262 D 157 155 3 158 5 0 0 28 47 -6.071 -0.318 -5.332 -3.707 -3.620 IL 158 158 3 158 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 40 g c - - MP 159 158 3 163 6 2 2 28 47 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.599 -2.473 -3.656 1.039 -4.202 -4.429 0.226 -3.939 -3.576 2.939 -4.020 1.560 -0.063 -3.764 -1.726 -2.541 ML 160 158 3 163 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 39 C G - - MP 165 164 6 169 6 2 2 26 45 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 166 164 6 169 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 29 38 C G - - MP 171 170 6 175 4 2 2 24 43 -6.847 -7.054 -0.057 -5.468 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 172 170 6 175 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 174 170 6 175 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 175 175 5 175 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 176 176 6 176 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - U - - - ML 177 176 6 179 3 1 1 21 40 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 178 176 6 179 3 0 0 20 39 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - u - - - ML 180 179 3 182 3 1 1 20 39 -7.871 -0.022 -6.525 0.539 -0.803 -1.005 0.562 D 181 179 3 182 3 0 0 19 38 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - u - - - ML 183 182 3 185 3 1 1 19 38 -7.871 -0.022 -6.525 -0.632 0.426 -1.400 0.707 D 184 182 3 185 3 0 0 18 37 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - U - - - ML 186 185 3 188 3 1 1 18 36 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 187 185 3 188 3 0 0 17 36 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 34 - U - - - ML 189 188 3 191 3 1 1 16 35 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 190 188 3 191 3 0 0 16 34 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 35 - g - - - ML 192 191 3 194 3 1 1 15 33 -7.871 -0.022 -6.525 -0.285 0.173 0.291 -0.271 D 193 191 3 194 3 0 0 15 33 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 36 - G - - - ML 195 194 3 197 3 1 1 13 32 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 37 - U - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -1.315 -1.342 -2.039 1.566 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 49 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME TB10Cs4H4 ACC RF01534 DESC Trypanosomatid snoRNA TB10Cs4H4 LENG 66 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 12:38:45 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01534/CM NSEQ 2 EFFN 1.621094 CKSUM 2752011379 STATS LOCAL MSV -8.3043 0.72860 STATS LOCAL VITERBI -9.6155 0.72860 STATS LOCAL FORWARD -3.0231 0.72860 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65821 1.46211 1.13489 1.36135 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.30056 3.11643 0.23873 2.69033 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23548 2.86014 2.62213 2.52693 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.34278 2.83766 0.24384 2.78442 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.34500 2.83980 0.24316 2.78754 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.53376 2.34528 1.52851 2.29340 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.76065 2.50299 0.42286 2.39627 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.28758 2.25069 0.68890 2.14895 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.35389 0.90143 2.07157 0.98611 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81933 0.35387 2.54500 1.83311 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.39032 0.32249 2.95334 2.02577 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.30056 3.11643 0.23873 2.69033 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.26193 2.28703 2.76176 0.31320 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23548 2.86014 2.62213 2.52693 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.30056 3.11643 0.23873 2.69033 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81751 0.35417 2.54426 1.83284 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.82198 0.35343 2.54608 1.83351 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.53378 2.34522 1.52851 2.29330 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.82390 0.35312 2.54686 1.83380 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.76567 2.51066 0.41907 2.40735 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 1.87406 2.44179 0.41396 2.31805 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.35717 0.90071 2.07258 0.98572 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.91419 2.28223 1.06920 1.87198 22 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.44112 0.86882 2.19196 0.96288 23 c - - < 1.38629 1.38629 1.38629 1.38629 0.32909 3.73767 1.36018 1.46634 0.26236 1.09861 0.40547 24 1.82826 0.61702 2.35277 1.58644 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.06408 3.47266 3.47266 1.46634 0.26236 2.54771 0.08149 25 1.82029 1.93681 2.28378 0.52432 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.06408 3.47266 3.47266 1.46634 0.26236 2.54771 0.08149 26 1.82029 1.93681 2.28378 0.52432 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.06408 3.47266 3.47266 1.46634 0.26236 0.17022 1.85456 27 1.86873 2.43598 0.41720 2.30980 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.80933 0.35553 2.54093 1.83159 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81328 0.35487 2.54254 1.83219 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.26193 2.28703 2.76176 0.31320 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.01597 1.93386 2.07272 1.00099 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 1.80880 1.09906 2.33948 0.89996 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.26193 2.28703 2.76176 0.31320 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.26193 2.28703 2.76176 0.31320 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 1.57281 1.27309 1.19374 1.56310 35 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.30056 3.11643 0.23873 2.69033 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.26193 2.28703 2.76176 0.31320 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.09689 2.70104 0.31051 2.56456 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.09074 2.69404 0.31317 2.55524 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.49572 0.71940 2.23699 1.12782 40 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.77641 2.35538 0.46723 2.21495 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.39032 0.32249 2.95334 2.02577 42 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 1.13471 2.23539 0.79435 2.12309 43 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.54667 0.70911 2.25508 1.12482 44 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.62735 1.59602 2.31744 0.46760 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.10791 2.71359 0.30580 2.58131 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.52679 1.78086 2.16176 0.45182 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.10903 2.71488 0.30532 2.58303 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.10977 2.71571 0.30501 2.58415 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.30056 3.11643 0.23873 2.69033 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.26193 2.28703 2.76176 0.31320 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.30056 3.11643 0.23873 2.69033 52 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.30056 3.11643 0.23873 2.69033 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.26193 2.28703 2.76176 0.31320 54 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.10653 2.71203 0.30638 2.57922 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 1.13471 2.23534 0.79439 2.12300 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.38451 0.78918 2.06909 1.11673 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.62677 1.59603 2.31723 0.46770 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.26193 2.28703 2.76176 0.31320 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.52692 1.78086 2.16180 0.45180 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 3.01247 0.28318 2.67245 2.05290 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 3.01500 0.28284 2.67344 2.05339 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 0.91419 2.28223 1.06920 1.87198 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 0.23548 2.86014 2.62213 2.52693 64 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 2.30056 3.11643 0.23873 2.69033 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 0.23548 2.86014 2.62213 2.52693 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //