INFERNAL1/a [1.1.5 | Sep 2023] NAME CC0196 ACC RF01519 DESC Caulobacter sRNA CC0196 STATES 178 NODES 51 CLEN 58 W 74 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 10:20:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01519/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.746094 CKSUM 2038295690 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -6.0811 0.72658 ECMLC 0.63246 -9.87545 0.36077 1600000 777678 0.001543 ECMGC 0.42427 -18.68436 -4.19266 1600000 187187 0.002137 ECMLI 0.61060 -8.32844 1.36681 1600000 446857 0.002685 ECMGI 0.46825 -13.60030 -1.24207 1600000 130387 0.003068 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 94 -6.871 -7.078 -0.056 -5.492 IL 1 1 2 1 4 1 12 78 98 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 12 74 94 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 4 2 3 5 3 0 6 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 11 73 93 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 7 5 3 8 3 0 5 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 11 72 92 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 10 8 3 11 3 0 5 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 10 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 10 71 91 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 13 11 3 14 3 0 4 69 89 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 9 70 90 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 16 14 3 17 3 0 3 68 88 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 8 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 8 69 89 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 19 17 3 20 3 0 2 67 87 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 7 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 8 68 88 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 22 20 3 23 3 0 2 66 86 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 6 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 7 67 86 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 25 23 3 26 3 0 1 65 85 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 6 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 6 66 85 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 28 26 3 29 3 0 1 64 84 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 5 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 6 65 84 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 31 29 3 32 3 0 0 63 83 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 5 64 83 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 34 32 3 35 3 0 0 62 82 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 4 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 5 63 82 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 37 35 3 38 3 0 0 61 81 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 3 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 4 61 81 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 40 38 3 41 3 0 0 60 80 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 3 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - C - - - ML 42 41 3 44 3 1 4 60 80 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 43 41 3 44 3 0 0 59 79 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 2 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 45 44 3 47 3 1 3 59 79 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 46 44 3 47 3 0 0 58 78 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 2 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 3 58 78 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 49 47 3 50 3 0 0 57 77 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - C - - - ML 51 50 3 53 3 1 2 57 77 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 52 50 3 53 3 0 0 56 75 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 2 56 76 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 55 53 3 56 3 0 0 55 74 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 2 55 74 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 58 56 3 59 3 0 0 54 73 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - U - - - ML 60 59 3 62 3 1 1 54 73 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 61 59 3 62 3 0 0 53 72 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - C - - - ML 63 62 3 65 3 1 1 53 72 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 64 62 3 65 3 0 0 52 71 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 1 52 71 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 67 65 3 68 3 0 0 51 70 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 69 68 3 71 3 1 1 51 70 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 70 68 3 71 3 0 0 49 69 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 1 50 69 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 73 71 3 74 3 0 0 48 68 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - G - - - ML 75 74 3 77 3 1 1 49 68 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 76 74 3 77 3 0 0 47 67 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 1 48 67 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 79 77 3 80 3 0 0 46 66 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 81 80 3 83 3 1 1 46 66 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 82 80 3 83 3 0 0 45 64 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 1 45 64 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 85 83 3 86 3 0 0 44 63 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - U - - - ML 87 86 3 89 3 1 1 44 63 -7.893 -0.022 -6.547 -1.355 -1.374 -2.081 1.579 D 88 86 3 89 3 0 0 43 62 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - C - - - ML 90 89 3 92 3 1 1 43 62 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 91 89 3 92 3 0 0 42 61 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - C - - - ML 93 92 3 95 3 1 1 42 61 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 94 92 3 95 3 0 0 41 60 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 1 41 60 -8.288 -0.020 -6.606 1.686 -2.228 -1.874 -1.756 D 97 95 3 98 3 0 0 40 59 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 58 - U - - MR 99 98 3 101 3 1 1 40 59 -8.288 -0.020 -6.606 -1.355 -1.374 -2.081 1.579 D 100 98 3 101 3 0 0 38 57 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 57 - C - - MR 102 101 3 104 5 1 1 39 58 -7.031 -0.041 -6.847 -7.059 -7.950 -1.569 1.574 -2.387 -1.018 D 103 101 3 104 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 104 104 3 104 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 33 56 C G - - MP 105 104 3 109 6 2 2 38 57 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 106 104 3 109 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 3 109 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 55 A U - - MP 111 110 6 115 6 2 2 36 55 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -3.676 -2.738 -3.703 3.251 -3.984 -5.036 0.308 -3.752 -3.600 1.203 -4.141 -0.233 -0.110 -4.243 -1.633 -2.544 ML 112 110 6 115 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 35 54 G C - - MP 117 116 6 121 6 2 2 34 53 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 118 116 6 121 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 36 53 C G - - MP 123 122 6 127 6 2 2 32 51 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 124 122 6 127 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 37 52 C G - - MP 129 128 6 133 6 2 2 30 49 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 130 128 6 133 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 38 51 C G - - MP 135 134 6 139 6 2 2 28 47 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 136 134 6 139 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 39 50 G C - - MP 141 140 6 145 6 2 2 26 45 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 142 140 6 145 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 40 49 G C - - MP 147 146 6 151 6 2 2 24 43 -9.079 -9.018 -0.022 -7.794 -8.074 -8.469 -4.606 -3.029 -4.693 0.290 -5.041 -4.640 -0.439 -4.925 -4.238 3.604 -4.585 -0.724 -0.828 -4.378 -2.469 -3.572 ML 148 146 6 151 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 41 48 C G - - MP 153 152 6 157 4 2 2 22 41 -6.871 -7.078 -0.056 -5.492 -4.408 -4.301 -4.121 -0.546 -2.871 -4.551 3.505 -3.667 -4.166 -0.285 -4.442 -2.246 0.657 -4.486 -0.574 -3.011 ML 154 152 6 157 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 42 - C - - - ML 159 158 6 161 3 1 1 19 37 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 160 158 6 161 3 0 0 18 37 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 43 - G - - - ML 162 161 3 164 3 1 1 18 36 -7.893 -0.022 -6.547 -1.428 -2.623 1.686 -2.009 D 163 161 3 164 3 0 0 17 36 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 44 - C - - - ML 165 164 3 167 3 1 1 16 35 -7.893 -0.022 -6.547 -1.569 1.574 -2.387 -1.018 D 166 164 3 167 3 0 0 16 34 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 45 - A - - - ML 168 167 3 170 3 1 1 15 33 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 169 167 3 170 3 0 0 15 33 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 46 - A - - - ML 171 170 3 173 3 1 1 13 32 -7.893 -0.022 -6.547 1.686 -2.228 -1.874 -1.756 D 172 170 3 173 3 0 0 13 32 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 47 - A - - - ML 174 173 3 176 2 1 1 1 1 * 0.000 1.686 -2.228 -1.874 -1.756 D 175 173 3 176 2 0 0 0 0 * 0.000 IL 176 176 3 176 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 177 176 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CC0196 ACC RF01519 DESC Caulobacter sRNA CC0196 LENG 58 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 10:20:03 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01519/CM NSEQ 2 EFFN 1.503906 CKSUM 2038295690 STATS LOCAL MSV -8.0274 0.72658 STATS LOCAL VITERBI -8.9441 0.72658 STATS LOCAL FORWARD -3.2471 0.72658 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44417 1.14426 1.48083 1.52257 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.20137 2.23766 2.69729 0.33512 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.31079 0.35147 2.86977 1.96288 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.20137 2.23766 2.69729 0.33512 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.20137 2.23766 2.69729 0.33512 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.20137 2.23766 2.69729 0.33512 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.22773 3.03072 0.26138 2.60427 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.25424 2.79246 2.56124 2.45321 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.25424 2.79246 2.56124 2.45321 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.22773 3.03072 0.26138 2.60427 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.22773 3.03072 0.26138 2.60427 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.31079 0.35147 2.86977 1.96288 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.25424 2.79246 2.56124 2.45321 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.31079 0.35147 2.86977 1.96288 13 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.31079 0.35147 2.86977 1.96288 14 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.31079 0.35147 2.86977 1.96288 15 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.25424 2.79246 2.56124 2.45321 16 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.31079 0.35147 2.86977 1.96288 17 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.31079 0.35147 2.86977 1.96288 18 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.25424 2.79246 2.56124 2.45321 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.20137 2.23766 2.69729 0.33512 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.31079 0.35147 2.86977 1.96288 21 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.25424 2.79246 2.56124 2.45321 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.31079 0.35147 2.86977 1.96288 23 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.20137 2.23766 2.69729 0.33512 24 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.22773 3.03072 0.26138 2.60427 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.25424 2.79246 2.56124 2.45321 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.31079 0.35147 2.86977 1.96288 27 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.20137 2.23766 2.69729 0.33512 28 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.20137 2.23766 2.69729 0.33512 29 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.31079 0.35147 2.86977 1.96288 30 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.31079 0.35147 2.86977 1.96288 31 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.25424 2.79246 2.56124 2.45321 32 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.75566 0.37869 2.47095 1.78875 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.57588 2.27724 1.48075 2.22791 34 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.30392 2.76664 0.25982 2.71706 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.76106 0.37774 2.47305 1.78954 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.76078 0.37779 2.47294 1.78950 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.76033 0.37786 2.47277 1.78943 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.30337 2.76614 0.25999 2.71631 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.30314 2.76592 0.26007 2.71599 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.75904 0.37809 2.47227 1.78924 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.31079 0.35147 2.86977 1.96288 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.22773 3.03072 0.26138 2.60427 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.31079 0.35147 2.86977 1.96288 44 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.25424 2.79246 2.56124 2.45321 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.25424 2.79246 2.56124 2.45321 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.25424 2.79246 2.56124 2.45321 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.06153 2.63759 0.32794 2.51579 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.93486 0.30341 2.59475 2.01068 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.93562 0.30330 2.59503 2.01083 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.06223 2.63834 0.32762 2.51683 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.06256 2.63871 0.32747 2.51733 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.06296 2.63914 0.32729 2.51793 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.94053 0.30258 2.59690 2.01178 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.46335 1.72622 2.09490 0.48806 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.06464 2.64097 0.32653 2.52044 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.31079 0.35147 2.86977 1.96288 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.20137 2.23766 2.69729 0.33512 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //