INFERNAL1/a [1.1.5 | Sep 2023] NAME v-snoRNA-1 ACC RF01516 DESC Human herpesvirus 1 small nucleolar RNA STATES 199 NODES 67 CLEN 65 W 151 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 16 18:48:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01516/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 1888877482 NULL 0.000 0.000 0.000 0.000 GA 75.00 TC 85.10 NC 54.30 EFP7GF -5.6033 0.72681 ECMLC 0.72570 -9.35600 -0.58679 1600000 696570 0.001723 ECMGC 0.41748 -15.96203 -2.74963 1600000 99448 0.004022 ECMLI 0.54393 -9.04729 1.27640 1600000 329549 0.003641 ECMGI 0.47110 -7.97342 2.72474 1600000 61783 0.006474 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 151 236 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 21 153 238 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 152 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 20 151 236 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 4 2 3 5 3 0 16 148 233 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 22 157 243 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 20 150 235 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 7 5 3 8 3 0 15 146 231 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 21 156 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 19 148 233 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 10 8 3 11 3 0 15 145 230 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 21 154 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 18 147 232 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 13 11 3 14 3 0 14 144 228 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 20 153 239 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 18 146 230 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 16 14 3 17 3 0 13 142 227 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 19 152 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 17 144 229 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 19 17 3 20 3 0 12 141 225 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 19 150 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 16 143 227 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 22 20 3 23 3 0 12 140 224 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 18 149 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 16 141 226 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 25 23 3 26 3 0 11 138 222 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 17 148 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 15 140 224 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 28 26 3 29 3 0 10 137 221 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 17 146 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 30 29 3 32 3 1 14 139 223 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 31 29 3 32 3 0 10 136 219 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 16 145 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 13 137 221 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 34 32 3 35 3 0 9 134 218 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 15 144 228 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 13 136 220 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 37 35 3 38 3 0 8 133 216 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 14 142 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - u - - - ML 39 38 3 41 3 1 12 135 218 -5.392 -0.070 -5.392 -0.913 0.540 -1.072 0.622 D 40 38 3 41 3 0 8 131 215 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 14 141 225 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - g - - - ML 42 41 3 44 3 1 11 133 217 -5.392 -0.070 -5.392 0.380 -1.131 0.729 -0.776 D 43 41 3 44 3 0 7 130 213 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 13 140 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - a - - - ML 45 44 3 47 3 1 11 132 215 -5.392 -0.070 -5.392 0.435 0.432 -0.809 -0.457 D 46 44 3 47 3 0 6 129 212 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 13 138 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 10 131 214 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 49 47 3 50 3 0 6 127 210 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 12 137 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - a - - - ML 51 50 3 53 3 1 10 129 212 -5.392 -0.070 -5.392 0.435 0.432 -0.809 -0.457 D 52 50 3 53 3 0 5 126 208 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 11 136 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - g - - - ML 54 53 3 56 3 1 9 128 210 -5.392 -0.070 -5.392 0.380 -1.131 0.729 -0.776 D 55 53 3 56 3 0 5 124 207 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 11 134 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - C - - - ML 57 56 3 59 3 1 8 126 209 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 58 56 3 59 3 0 4 123 205 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 10 133 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 8 125 207 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 61 59 3 62 3 0 3 122 204 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 9 131 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - G - - - ML 63 62 3 65 3 1 7 124 206 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 64 62 3 65 3 0 3 120 202 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 9 130 213 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 66 65 3 68 3 1 7 122 204 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 67 65 3 68 3 0 2 119 200 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 8 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - G - - - ML 69 68 3 71 3 1 6 121 203 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 70 68 3 71 3 0 2 117 199 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 8 127 210 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - G - - - ML 72 71 3 74 3 1 5 119 201 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 73 71 3 74 3 0 1 116 197 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 7 126 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - C - - - ML 75 74 3 77 3 1 5 118 199 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 76 74 3 77 3 0 1 115 196 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 6 125 207 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - U - - - ML 78 77 3 80 3 1 4 117 198 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 79 77 3 80 3 0 0 113 194 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 6 123 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - G - - - ML 81 80 3 83 3 1 4 115 196 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 82 80 3 83 3 0 0 112 192 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 5 122 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - U - - - ML 84 83 3 86 3 1 4 114 194 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 85 83 3 86 3 0 0 110 191 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 5 120 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - C - - - ML 87 86 3 89 3 1 3 112 193 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 88 86 3 89 3 0 0 109 189 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 4 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 90 89 3 92 3 1 3 111 191 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 91 89 3 92 3 0 0 107 187 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 4 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - G - - - ML 93 92 3 95 3 1 2 109 190 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 94 92 3 95 3 0 0 106 186 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 4 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - A - - - ML 96 95 3 98 3 1 2 108 188 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 97 95 3 98 3 0 0 104 184 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 3 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - g - - - ML 99 98 3 101 3 1 2 106 186 -5.392 -0.070 -5.392 0.380 -1.131 0.729 -0.776 D 100 98 3 101 3 0 0 103 182 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 3 113 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - G - - - ML 102 101 3 104 3 1 1 105 185 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 103 101 3 104 3 0 0 101 181 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - C - - - ML 105 104 3 107 3 1 1 103 183 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 106 104 3 107 3 0 0 100 179 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 2 110 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - g - - - ML 108 107 3 110 3 1 1 102 181 -5.392 -0.070 -5.392 0.380 -1.131 0.729 -0.776 D 109 107 3 110 3 0 0 99 177 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 2 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - G - - - ML 111 110 3 113 3 1 1 101 179 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 112 110 3 113 3 0 0 97 176 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 2 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - C - - - ML 114 113 3 116 3 1 1 99 178 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 115 113 3 116 3 0 0 95 174 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 1 106 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - U - - - ML 117 116 3 119 3 1 1 97 176 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 118 116 3 119 3 0 0 94 172 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 1 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 120 119 3 122 3 1 1 96 174 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 121 119 3 122 3 0 0 92 170 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 1 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - A - - - ML 123 122 3 125 3 1 1 94 172 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 124 122 3 125 3 0 0 91 168 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - g - - - ML 126 125 3 128 3 1 1 93 171 -5.392 -0.070 -5.392 -0.718 0.351 0.508 -0.526 D 127 125 3 128 3 0 0 89 167 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 1 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - G - - - ML 129 128 3 131 3 1 1 91 169 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 130 128 3 131 3 0 0 88 165 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - A - - - ML 132 131 3 134 3 1 1 90 167 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 133 131 3 134 3 0 0 86 163 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - A - - - ML 135 134 3 137 3 1 1 88 165 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 136 134 3 137 3 0 0 85 161 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 46 - A - - - ML 138 137 3 140 3 1 1 87 163 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 139 137 3 140 3 0 0 83 159 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 1 94 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 47 - U - - - ML 141 140 3 143 3 1 1 85 161 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 142 140 3 143 3 0 0 81 157 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 48 - u - - - ML 144 143 3 146 3 1 1 83 159 -5.392 -0.070 -5.392 -0.913 0.540 -1.072 0.622 D 145 143 3 146 3 0 0 80 155 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - G - - - ML 147 146 3 149 3 1 1 82 158 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 148 146 3 149 3 0 0 78 153 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - G - - - ML 150 149 3 152 3 1 1 80 156 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 151 149 3 152 3 0 0 76 151 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - U - - - ML 153 152 3 155 3 1 1 78 154 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 154 152 3 155 3 0 0 74 149 -11.551 -1.585 -0.585 IL 155 155 3 155 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - U - - - ML 156 155 3 158 3 1 1 77 151 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 157 155 3 158 3 0 0 73 147 -11.551 -1.585 -0.585 IL 158 158 3 158 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - G - - - ML 159 158 3 161 3 1 1 75 149 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 160 158 3 161 3 0 0 71 145 -11.551 -1.585 -0.585 IL 161 161 3 161 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 54 - A - - - ML 162 161 3 164 3 1 1 73 147 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 163 161 3 164 3 0 0 69 143 -11.551 -1.585 -0.585 IL 164 164 3 164 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 55 - G - - - ML 165 164 3 167 3 1 1 71 145 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 166 164 3 167 3 0 0 67 140 -11.551 -1.585 -0.585 IL 167 167 3 167 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 56 - A - - - ML 168 167 3 170 3 1 1 69 143 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 169 167 3 170 3 0 0 65 138 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 57 - U - - - ML 171 170 3 173 3 1 1 67 141 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 172 170 3 173 3 0 0 63 135 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 58 - U - - - ML 174 173 3 176 3 1 1 65 138 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 175 173 3 176 3 0 0 61 133 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 74 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 59 - C - - - ML 177 176 3 179 3 1 1 63 136 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 178 176 3 179 3 0 0 59 130 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 60 - U - - - ML 180 179 3 182 3 1 1 61 133 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 181 179 3 182 3 0 0 56 127 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 61 - G - - - ML 183 182 3 185 3 1 1 59 130 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 184 182 3 185 3 0 0 53 124 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 69 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 62 - A - - - ML 186 185 3 188 3 1 1 56 127 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 187 185 3 188 3 0 0 50 120 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 67 138 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 63 - u - - - ML 189 188 3 191 3 1 1 53 123 -5.392 -0.070 -5.392 -0.913 0.540 -1.072 0.622 D 190 188 3 191 3 0 0 45 114 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 64 - G - - - ML 192 191 3 194 3 1 1 49 118 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 193 191 3 194 3 0 0 32 101 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 65 - u - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 0.423 -0.727 -0.724 0.536 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME v-snoRNA-1 ACC RF01516 DESC Human herpesvirus 1 small nucleolar RNA LENG 65 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Tue Jul 16 18:48:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01516/CM NSEQ 2 EFFN 2.000000 CKSUM 1888877482 STATS LOCAL MSV -7.8829 0.72681 STATS LOCAL VITERBI -9.5062 0.72681 STATS LOCAL FORWARD -3.1373 0.72681 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45398 1.47499 1.20816 1.43198 1.38629 1.38629 1.38629 1.38629 0.02964 4.83577 3.85060 0.39730 1.11515 0.00000 * 1 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 1.12273 2.17004 0.88086 1.92408 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 1.08498 1.08670 1.94700 1.70340 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.08498 1.08670 1.94700 1.70340 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 1.12273 2.17004 0.88086 1.92408 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.12273 2.17004 0.88086 1.92408 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.12273 2.17004 0.88086 1.92408 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 1.88401 1.14290 1.03416 1.75097 - g - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 1.09289 1.89038 1.88803 1.01509 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //