# STOCKHOLM 1.0
#=GF ID Afu_335
#=GF AC RF01513
#=GF DE A. fumigatus snoRNA Afu_335
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 46.8
#=GF TC 50.5
#=GF SE INFERNAL
#=GF SS Predicted; Osuch I
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF RN [1]
#=GF RM 18346967
#=GF RT Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a
#=GF RT novel mechanism for regulation of protein synthesis.
#=GF RA Jochl C, Rederstorff M, Hertel J, Stadler PF, Hofacker IL, Schrettl M,
#=GF RA Haas H, Huttenhofer A
#=GF RL Nucleic Acids Res. 2008;36:2677-2689.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

EU780959.1/1-95              CUUUAUGAUGAAC-CCCUGAUAGGGACAUCUUAUGCCAAACGCAAAUGAUGUGAAUUUGGGCUCGGUAUUUUAGUAGAUGCUUCGAG--UUUCUGAUC
ABBS02000011.1/58644-58737   CCCAAUGAUGAUCAUCCAGAUAGGGACAGCUUAUGCUAU--GCAUGUGAUGUUACC-UGGAAAGAGAAUUUUAGUAGAUGCCUCUUGU-UAUCUGAGC
AM921933.1/1-97              UCGAGUGAUGAUCUUCCUGAUAGGGACAUCUGAUGCAAAAAGCACAUGAUGCGAAC-AGGACAAGAGAUUUUAGUAGAUGCUUCUUGGAUAUCUGAAG
AM920431.1/2305920-2305824   UCGUAUGAUGACUUUCCCGAUAGGGACAUCUGAUGCAAAUUGCAUAUGAUGUUACC-AGGACAAGAGAUUUUAGUAGAUGCUUCUUGACUAUCUGAAA
ABHV01000074.1/132700-132607 UCCAAUGAUGAUUUUCCAGAUAGGGACAGCUUAUGCUAU--GCAAAUGAUGUCACC-UGGAAAGAGAAUUUUAGUAGAUGCCUCUUUU-GAUCUGAGG
#=GC SS_cons                 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::.:::::::::
#=GC RF                      uCgaAUGAUGAucuUCCuGAUAGGGACAuCUuAUGCuAaauGCAuAUGAUGUuAcC.uGGacaggggAUUUUAGUAGAUGCuUCuuGu.UaUCUGAgg
//
