# STOCKHOLM 1.0
#=GF ID rliI
#=GF AC RF01487
#=GF DE Listeria sRNA rliI
#=GF AU Osuch I
#=GF GA 45.0
#=GF NC 44.1
#=GF TC 45.1
#=GF SE INFERNAL
#=GF SS Predicted;RNAalifold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 21.76 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 17259222
#=GF RT Identification of new noncoding RNAs in Listeria monocytogenes and
#=GF RT prediction of mRNA targets.
#=GF RA Mandin P, Repoila F, Vergassola M, Geissmann T, Cossart P
#=GF RL Nucleic Acids Res. 2007;35:962-974.
#=GF WK Listeria_monocytogenes_non-coding_RNA
#=GF SQ 5

AADR01000011.1/41253-41491 UAUUAAUGAAAAGAGGUGAGAUGACAUGUUUCUUUUGAAUGCGCGAACUAGUAUAGCUAAAUUUUUGUAUAUUGUCCGUGCAAUUUUUUCCGGUAUUGCAGUUACAUUGGCGAAGUCUGCCCAAAAAACUGUAUAACUAGAAAAAAUGAGAGAAGCAUGGAGUCACGCAAUCGGUUUGUAUAGUGCUAAAUUAGUAUUAU
AM263198.1/2742760-2742522 UAUUAAUGAAAAGAGGUGAGAUGACAUGUUUCUUUUGAAUGCACGCAGUAGUAUAGCUAAGUUUUUAUAUAUUGUCCGUGCAAUUUUUUCCGGUAUUGCAGUUACAUUGGUGAAGUCUGCCCAAAAAACUGUAUAACGAGAAAAAAUGAGAGAAGCAUGGAGUCACGCAAUCGGUUUGUAUAGUGCUAAAUUGGUAUUAU
AL596174.1/8221-7983       UAUUAAUGAAAAGAGGUGAGAUGACAUGUUUCUUUUGAAUGCGCGAACUAGUAUAGCUAAAUUUUUGUAUAUUGUCCGUGCAAUUUUUUCCGGUAUUGCAGUUACAUUGGUGAAGUCUGCCCAAAAAACUGUAUAACUAGAAAAAAUGAGAGAAGCAUGGAGUCACGCAAUCGGUUUGUAUAGUGCUAAAUUAGUAUUAU
AADQ01000008.1/15420-15182 UAUUAAUGAAAAGAGGUGAGAUGACAUGUUUCUUUUGAAUGCGCGAACUAGUAUAGCUAAAUUUUUGUAUAUUGUCCGUGCAAUUUUUUCCGGUAUUGCAGUUACAUUGGCGAAGUCUGCCCAAAAAACUGUAUAACGAGAAAAAAUGAGAGAAGCAUGGAGUCACGCAAUCGGUUUGUAUAGUGCUAAAUUAGUAUUAU
AL591984.1/123200-122962   UAUUAAUGAAAAGAGGUGAGAUGACAUGUUUCUUUUGAAUGCGCGAACUAGUAUAGCUAAAUUUUUGUAUAUUGUCCGUGCAAUUUUUUCCGGUAUUGCAGUUACAUUGGCGAAGUCUGCCCAAAAAACUGUAUAACGAGAAAAAAUGAGAGAAGCAUGGAGUCACGCAAUCGGUUUGUAUAGUGCUAAAUUAGUAUUAU
#=GC SS_cons               :::::::(((--((-(((-(((--((((((((((((,,,<<<<<<-<<--<<<<<<________>>>>>>--->>->>>>>><<<<<<<<--<<--<<<<<<<-----<<<<_____>>>>----->>>>>>>-->>-->>>>>>>>))))))))))))--)))-)))--))--)))<<<<<<<<<<<___>>>>>>>>>
#=GC RF                    UAUUAAUgaaAAGaGGcGAGacGACauGcuuCucucGAAuGCgCGaacUAguacagcUAAaUUUcuguacAUUgucCGcGCaauuuuuuCcGGuAUugCaGuuAcAUUGGcgAAGUccgCCcAAAAaaCuGcaUAaCgAGaaaaaaugagaGaagCauGGAguCACgCAAuCGGuucGuauagugCuaAAUuaGcacuau

AADR01000011.1/41253-41491 ACUUAUAAUUGGCGUCGGGCGCUUGUCUGACGCUUUUUU
AM263198.1/2742760-2742522 ACUUAUAAUGGGCGUCGGGCGCUUGUCUGACGCUUUUUU
AL596174.1/8221-7983       ACUUAUAAUUGGCGUCGGGCGCUUGUCUGACGCUUUUUU
AADQ01000008.1/15420-15182 ACUUAUAAUUGGCGUCGGGCGCUUGUCUGACGCUUUUUU
AL591984.1/123200-122962   ACUUAUAAUUGGCGUCGGGCGCUUGUCUGACGCUUUUUU
#=GC SS_cons               >>::::<<--<<<<<<<<<<____>>>>>>>>>>-->>:
#=GC RF                    aCUUAUaaUugGCGuCgGgCGcUUGcCcGaCGCcUUuuU
//
