# STOCKHOLM 1.0
#=GF ID rli36
#=GF AC RF01467
#=GF DE Listeria sRNA rli36
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 49.6
#=GF TC 105.0
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19448609
#=GF RT The Listeria transcriptional landscape from saprophytism to virulence.
#=GF RA Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H,
#=GF RA Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy
#=GF RA M, Vergassola M, Nahori MA, Soubigou G, Regnault B, Coppee JY, Lecuit M,
#=GF RA Johansson J, Cossart P
#=GF RL Nature. 2009;459:950-956.
#=GF WK Listeria_monocytogenes_non-coding_RNA
#=GF SQ 6

AL596166.1/150704-150621     AAAAUAGUAGUUAUUUCUUUAUAACGUUCAUAAAAGAAUAUCUAUUCAUUCCCACUUAGCUUCUGAUUCCCACAGAUCAAAAGC
AM263198.1/851747-851664     UAAAUAGUAGUUAUUUCUUUAUAGCGUUCCUUAAAGAAUAUCUAUUCAUUCCCACUUUGCUUCUGAUUCCCACAGAUCAAAAGC
AADQ01000002.1/102541-102624 UAAAUAGUAGUUAUUUCUUUAUAACUCUCAUAAGAGAAUAUCUAUUCAUUCCCACAUCGCUUCUGAUUCCCACAGAUCAAAAGC
AL591976.1/219527-219444     UAAAUAGUAGUUAUUUCUUUAUAACUCUCAUAAGAGAAUAUCUAUUCAUUCCCACAUCGCUUCUGAUUCCCACAGAUCAAAAGC
AE017262.2/859572-859489     UAAAUAGUAGUUAUUUCUUUAUAACUCUCAUAAGAGAAUAUCUAUUCAUUCCCACAUCGCUUCUGAUUCCCACAGAUCAAAAGC
FM242711.1/859984-859901     UAAAUAGUAGUUAUUUCUUUAUAACUCUCAUAAGAGAAUAUCUAUUCAUUCCCACAUCGCUUCUGAUUCCCACAGAUCAAAAGC
#=GC SS_cons                 :::::<<<<<-<<<<--<<<<<_______>>>>>-->>>>->>>>>::::::::::::<<<<-<<<<<______>>>>>->>>>
#=GC RF                      uAAAUaguaGUuauuUCcuuauAACucUCauaagAGaauaUCuauuCAUUCCCACaUcGCuuCuGauuCCCACAgauCaAaaGC
//
