# STOCKHOLM 1.0
#=GF ID rli23
#=GF AC RF01458
#=GF DE Listeria snRNA rli23
#=GF AU Osuch I
#=GF GA 45.0
#=GF NC 44.8
#=GF TC 45.2
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; antisense;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 22.00 -Z 2958934 CM SEQDB
#=GF DR SO; 0001263; ncRNA_gene;
#=GF RN [1]
#=GF RM 19448609
#=GF RT The Listeria transcriptional landscape from saprophytism to virulence.
#=GF RA Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H,
#=GF RA Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy
#=GF RA M, Vergassola M, Nahori MA, Soubigou G, Regnault B, Coppee JY, Lecuit M,
#=GF RA Johansson J, Cossart P
#=GF RL Nature. 2009;459:950-956.
#=GF WK Listeria_monocytogenes_non-coding_RNA
#=GF SQ 7

AB261975.1/7738-7641     UAUUACAAUAUGAUUAGAGCGAUUAAGCUCAUUAUUGAUGUAAAAAGUUUCAGACUUUAGCGAGGAAUGGAAACUUUCUAUCGGGGCGUUAUCGGCGG
CP000255.1/68682-68585   UAUUACAAUGUGAUUAGAGUGAUUAAGCUCAUUAUUGAUGUAAAAAGUUUCAGACUUUAGCGAGGAAUGGAAACUUUCUAUCGGGGCGUUAUCGGCAG
CP000703.1/63982-64079   UAUUACAAUAUGAUUAGAGCUAUUAAGCUGAUUAUUGAUGUAAAGAGUUUCAGACUUUAGCGAGGAAUGGAAACUUUCUAUCGGGGCGUUAUCGGCAG
AM263198.1/671271-671368 GAUUUCAAUAUUAUUAGAACCUAAGUGUUCUUUAUAGAGGUAGAAUGUUUCAGACUUUAGUGAGAAAUGAAAUGAUUCUAUUGGAGCGUUAUCUAAGG
AL591976.1/215482-215385 GAUUACAAUAGAUUUAGCGUAUUUAUACGCUGUUUUAUGGUAGAAUGUUUCGCACUUUAGCGAGGAAUGGAAACAUUCUAUGGGAGCGUUGUCUGCGG
AL591973.1/172171-172268 GAUUACAAUAGAUUUAGCGUAUUUAUACGCUGUUUUAUGGUAGAAUGUUUCGCACUUUAGCGAGGAAUGGAAACAUUCUAUGGGAGCGUUGUCUGCGG
AL591974.1/157606-157509 GAUUACAAUAGAUUUAGCGUAUUUAUACGCUGUUUUAUGGUAGAAUGUUUCGCACUUUAGCGAGGAAUGGAAACAUUCUAUGGGAGCGUUGUCUGCGG
#=GC SS_cons             ::<<<<---<<<<--<<<<<______>>>>>>>>>---->>>>((((((((-((<<<____>>><<<<<____>>>>>,,))))))))))::::::::
#=GC RF                  gAuuaCAAUaugaUUaGcGcauuuAugCgCuucauugagGuaaaacGuuuCagaCuuUAGcgaGGaaugGAAAcauuCUAucGgagCguuaUCuGcgG
//
