# STOCKHOLM 1.0
#=GF ID rli22
#=GF AC RF01457
#=GF DE Listeria sRNA rli22
#=GF AU Osuch I
#=GF GA 80.0
#=GF NC 57.8
#=GF TC 140.1
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; sRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 33.02 -Z 2958934 CM SEQDB
#=GF CL CL00114
#=GF DR GO; 0003729; mRNA binding;
#=GF DR GO; 0045947; negative regulation of translational initiation;
#=GF DR SO; 0000370; small_regulatory_ncRNA;
#=GF RN [1]
#=GF RM 19448609
#=GF RT The Listeria transcriptional landscape from saprophytism to virulence.
#=GF RA Toledo-Arana A, Dussurget O, Nikitas G, Sesto N, Guet-Revillet H,
#=GF RA Balestrino D, Loh E, Gripenland J, Tiensuu T, Vaitkevicius K, Barthelemy
#=GF RA M, Vergassola M, Nahori MA, Soubigou G, Regnault B, Coppee JY, Lecuit M,
#=GF RA Johansson J, Cossart P
#=GF RL Nature. 2009;459:950-956.
#=GF RN [2]
#=GF RM 27400116
#=GF RT Two novel members of the LhrC family of small RNAs in Listeria
#=GF RT monocytogenes with overlapping regulatory functions but distinctive
#=GF RT expression profiles.
#=GF RA Mollerup MS, Ross JA, Helfer AC, Meistrup K, Romby P, Kallipolitis BH
#=GF RL RNA Biol. 2016;13:895-915.
#=GF CC The UCCC motifs prevent ribosomal binding to oppA mRNA.
#=GF WK Listeria_monocytogenes_non-coding_RNA
#=GF SQ 6

AL591973.1/31997-32107       UAAUAUAGAACUUGUAAGCAAGGAAUACAAUUAGUUUUACUCCCUUUUUGCUAAUUGUAAACUUCCUUAAAAUCCUAAACUCCCUUUUUUGGACCGACUUGAUUGUCGGUC
AM263198.1/32814-32923       UAAUAUAGAACUUGUAAGCAAGGAACACAAUUAGUUUUACUCCCUUUUUGCUAAUUGUAGAAUUCCUUAAAAUCCUAAACUCCCUU-UUUGGACCGACUUGAUUGUCGGUC
AE017262.2/34076-34185       UAAUAUAGAACUUGUAAGCAAGGAAUACAAUUAGUUUUACUCCCUUUUUGCUAAUUGUAGAAUUCCUUAAAAUCCUAAACUCCCUU-UUUGGACCGACUUGAUUGUCGGUC
EU073162.1/361-470           UAAUAUAGAACUUGUAAGCAAGGAAUACAAUUAGUUUUACUCCCUUUUUGCUAAUUGUAGAAUUCCUUAAAAUCCUAAACUCCCUU-UUUGGACCGACUUGAUUGUCGGUC
CP002002.1/31999-32109       UAAUAUAGAACCUGUAAGCAAGGAAUACAAUUAGUUUUACUCCCUUUUUGCUAAUUGUAAACUUCCUUAAAAUCCUAAACUCCCUUUUUUGGACCGACUUGAUUGUCGGUC
AARN04000001.1/298123-298233 UAAUAUAGAACUUGUAAGCAAGGAAUACAAUUAGUUUUACUCCCUUUUUGCUAAUUGUAAACUUCCUUAAAAUCCUAAACUCCCUUUUUUGGAUCGACUUGAUUGUCGGUC
#=GC SS_cons                 :::::::::::::::::::<<<<<<<<<<<<<<<<______________>>>>>>>>>>--->>>>>>:::::::::::::::::::::::<<<<<<<______>>>>>>>
#=GC RF                      UAAUAUAGAACUUGUAAGCaaGGaauaCaauuaGuUUUACUCCCUUUUUgCuaauuGuaaAauuCCuuAAAAUCCUAAACUCCCUUUUUUGGacCGaCUUGAUUGuCGguC
//
