# STOCKHOLM 1.0
#=GF ID S_pombe_snR99
#=GF AC RF01452
#=GF DE small nucleolar RNA snR99
#=GF AU Osuch I
#=GF GA 90.0
#=GF NC 46.4
#=GF TC 166.5
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 24.97 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 15716270
#=GF RT Identification and functional analysis of 20 Box H/ACA small nucleolar
#=GF RT RNAs (snoRNAs) from Schizosaccharomyces pombe.
#=GF RA Li SG, Zhou H, Luo YP, Zhang P, Qu LH
#=GF RL J Biol Chem. 2005;280:16446-16455.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

AATM01000002.1/50041-50225 CCAUCAUCAGUAGUGGUUUUAACUUACUUUGUUAUACAAGUAA-UUAAAAUCUAUCCCGGGGUCAAGUAUGAUGAUUGGAGCCGAAUGGCCUAGAAAAUGCAUCCGUUCCGUCCUCGGAGAU-GAUUGAGUAGCUGUCCCGGUCGGUGUCUCAGGU----GGGACAUUGUUGGG-UUGUUGUUCGCACAUAA
AATM01000025.1/2059-2243   CCAUCAUCAGUAGUGGUUUUAACUUACUUUGUUAUACAAGUAA-UUAAAAUCUAUCCCGGGGUCAAGUAUGAUGAUUGGAGCCGAAUGGCCUAGAAAAUGCAUCCGUUCCGUCCUCGGAGAU-GAUUGAGUAGCUGUCCCGGUCGGUGUCUCAGGU----GGGACAUUGUUGGG-UUGUUGUUCGCACAUAA
AJ577639.1/1-190           CCAUCAUCAGUA--GGUUUUAACUUACUUUGUUAUAUAAGUAAAGUAAAAUCAAUCCUGAAGUCAAGUAUGAUGGUUGGAGUCUCCGGACCAAGAAAAUGCAUCCGUUCCGUCUUCAGCGAAGAAUUGAGUGGCUUUCCCGGUCGUUGACUUUUUUCCAUGGGUCAAGGAUGGGAUUGUCUCCCAGACAUUU
AATM01000007.1/38232-38049 CCAUCAUCAGUAGCGGUUUUAACUUACUUUGUUAUAUAAGUAA-UUAAAAUCAAA-CUGUGGUCAAGUAUGAUGAUCGGAGCCGAAUGGCUUAGAAGAUGCAUCCGUUCCGUCCACAGAGAU-GACUGAGUAGCUGUCCCGGUCGACGUCUCAGGU----GGGACGUUGUUGGG-UUGUUGCUCGUACAUUU
AJ632017.1/1-190           CCAUCAUCAGUA--GGUUUUAACUUACUUUGUUAUAUAAGUAAAGUAAAAUCAAUCCUGAAGUCAAGUAUGAUGGUUGGAGUCUCCGGACCAAGAAAAUGCAUCCGUUCCGUCUUCAGCGAAAAAUUGAGUGGCUUUCCCGGUCGUUGACUUUUUUCCAUGGGUCAAGGAUGGGAUUGUCUCCCAGACAUUU
#=GC SS_cons               ::::::::::::::<<<<<<<<-<<<<<<________>>>>>>.>>>>>>>>::::<<<<<<-<------<<<<<<<---<<<____>>>------>>>->>>>------>->>>>>>::::.::::::<<<<<---<<<<<-<<<<<<<<<____....>>>>>>>>>>>>>>.-->>>>>::::::::::
#=GC RF                    CCAUCAUCAGUAGuGguuuuaaCuuaCuuUGUUAUAuaaGuaa.uuaaaauCaAuCCcGggGUCAAGUAUGauGauuGGAGcCgaauGgCcuAGAAaauGCauCCGUUCCGUCccCgGaGAu.gAuUGAgcggCUgUCCCggUCgguGuCucaggU....ggGaCaccGcuGGG.UUGucgcuCguACAUuu
//
