# STOCKHOLM 1.0
#=GF ID S_pombe_snR100
#=GF AC RF01449
#=GF DE small nucleolar RNA snR100
#=GF AU Osuch I
#=GF GA 80.0
#=GF NC 42.5
#=GF TC 99.6
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 23.57 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 15716270
#=GF RT Identification and functional analysis of 20 Box H/ACA small nucleolar
#=GF RT RNAs (snoRNAs) from Schizosaccharomyces pombe.
#=GF RA Li SG, Zhou H, Luo YP, Zhang P, Qu LH
#=GF RL J Biol Chem. 2005;280:16446-16455.
#=GF WK Small_nucleolar_RNA
#=GF SQ 3

CU329671.1/3393616-3393802   UUUCUCCUCUUUCUGCCUAUCUGUUGUUCAUAAUCAACUGCGUAGUUCUGGUGAAGGAGUAAAUUAAACUGCC-----UCGCACCGCCGUACUCAUUUUUACCUCGAGUAUGGUGGCCGUGGAAUGGUGGUUUUUUAUGCAGUCGGGAAUGAAAGC-AGCUGUAAUUUCCUUGCAUAAUGAGCCUAAAUACCU
AATM01000023.1/268758-268938 UCUCUCCUCUUUCUGCCUGCCUGUUGUCCUUGAUCAGCUGAGCAGUUCUGGUGUAGGAGAAGAAUUAGCAGCCAUCCUUGUUCGUACCUUACCUCAUAUUAGCGAGCAGG-GGU------GGACCGU-----GUCUGCCGAGGCUCUUGGGGCUGUCUGUUCGUUGACUUCCUCUGGCUGCGGUUGACUACAA
AJ577640.1/1-187             UUUCUCCUCUUUCUGCCUAUCUGUUGUUCAUAAUCAACUGCGUAGUUCUGGUGAAGGAGUAAAUUAAACUGCC-----UCGCACCGCCGUACUCAUUUUUACCUCGAGUAUGGUGGCCGUGGAAUGGUGGUUUUUUAUGCAGUCGGGAAUGAAAGC-AGCUGUAAUUUCCUUGCAUAAUGAGCCUAAAUACCU
#=GC SS_cons                 <<<<<<<<---<<---<<<<--<<<<________>>>>--->>>>---->>--->>>>>->>>:::::::<<<.....<<<<-<<<<<<<<<<<___________>>>>>>>>>>>-->>>>--->>><<<<<-<<<<<<<<--<<<<<<---<<_.__>>--->>>>>>>>>>>>>>->>>>>:::::::::
#=GC RF                      ucuCuCCuCUUuCUGCCugcCUGuuGUuCaUaAUCaaCUGagcaGUUCUGgUGaaGGaGuagauUaAaCugcC.....ucgCaCCaCCguacucauUuUUAcCuagaguacGGuGGCCGcggAauGgcGGcucUuuaugcaguCgggaauGaaagc.aGcuguaauuccccugcauaaUgagCCUaAaUACau
//
