# STOCKHOLM 1.0
#=GF ID S_pombe_snR94
#=GF AC RF01445
#=GF DE small nucleolar RNA snR94
#=GF AU Osuch I
#=GF GA 100.0
#=GF NC 42.8
#=GF TC 161.2
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 32.16 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 15716270
#=GF RT Identification and functional analysis of 20 Box H/ACA small nucleolar
#=GF RT RNAs (snoRNAs) from Schizosaccharomyces pombe.
#=GF RA Li SG, Zhou H, Luo YP, Zhang P, Qu LH
#=GF RL J Biol Chem. 2005;280:16446-16455.
#=GF WK Small_nucleolar_RNA
#=GF SQ 3

AJ632012.1/1-210           UUAUUGCAACCUUCUAAUAACUUUAC-AUCUUCUUAUCCAAAGAAGAAGGGUUAGAAUGUACCGUGUUUUACGGAAGUUCCAUUCCCGUAGGGUUACAAUGUGUUGCUAGAAUAAACCGUAAGUCAUAGUACAUAUAGAGGCCAAUUCUGUA-AACUUUUUUAAAGUC----UAUGGAAAACCCUCUAUGUGUCUCCAAU
CU329672.1/923877-924086   UUAUUGCAACCUUCUAAUAACUUUAC-AUCUUCUUAUCCAAAGAAGAAGGGUUAGAAUGUACCGUGUUUUACGGAAGUUCCAUUCCCGUAGGGUUACAAUGUGUUGCUAGAAUAAACCGUAAGUCAUAGUACAUAUAGAGGCCAAUUCUGUA-AACUUUUUUAAAGUC----UAUGGAAAACCCUCUAUGUGUCUCCAAU
AATM01000113.1/13066-12855 AGCCUGCAAC-UACUAAUAGCUUCGUGGUCGCUUCUUCCAAAGCGGCAGGAGUGUCUUGCGUUGCGUUUUGCGACGGGGGCAUAUCUGCGGAGUUACA-UUUGUUGCUAGAAUAAG-CGUGAAUCAUAGUACACCGAGGGUCCACAUCUUCGUGUUGCUGUUCGCAGCAAUAUUCGGAUAACCCUCUCGGUGUCUCC-AU
#=GC SS_cons               :::::<<<<<---------<<<<<<<.---------------------<<<---<<<<---<<<<<___>>>>>-->>>>---->>>>>>>>>>-------->>>>>:::::::::<<<<----------<<<<<<<<<<<----<<<<<<<.-<<<<_____>>>>-....>>>>>>>--->>>>>>>>>>>-------
#=GC RF                    uuauUGCaaCCUuCUAAUAaCuucgc.aUCuucUuaUCCAAAGaaGaAgGguUagcauGuaccGcgUUUugCggaagugcCAUucCcgcggaGuUACAAUgUGuuGCUAGAAUAAaCcGuaAgUCAUAGUaCaccgaGaGgCCAauuCugua.aacgcUuUUagcguC....uacgGaaAACcCuCucgguGuCUCCAAU

AJ632012.1/1-210           AGAGAACGGACAUCUC
CU329672.1/923877-924086   AGAGAACGGACAUCUC
AATM01000113.1/13066-12855 UGAGCACAAACAUUUU
#=GC SS_cons               ----->>>>:::::::
#=GC RF                    aGAGaaCgGACAUcUc
//
