# STOCKHOLM 1.0
#=GF ID S_pombe_snR42
#=GF AC RF01440
#=GF DE small nucleolar RNA snR42
#=GF AU Osuch I
#=GF GA 90.0
#=GF NC 38.6
#=GF TC 157.5
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.69 -Z 2958934 CM SEQDB
#=GF CL CL00032
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 15716270
#=GF RT Â§Identification and functional analysis of 20 Box H/ACA small nucleolar
#=GF RT RNAs (snoRNAs) from Schizosaccharomyces pombe.
#=GF RA Li SG, Zhou H, Luo YP, Zhang P, Qu LH
#=GF RL J Biol Chem. 2005;280:16446-16455.
#=GF WK Small_nucleolar_RNA
#=GF SQ 3

AJ632006.1/1-208           AUCUCACAA--AAUAAUGAAUUACUGAUGUCAAAAAGUCUGCUCUCUUCUAACGCGGUUAUAAUAUAGAACCGUAUUAAUGGUUGCAGCUUUUUCCUCUUCAUGGAAUCGGUAUAGAUUAUGUCGGGGAGACCGACAGCAUAGCUUAAAACCAUCGUGAAGUCGUUGCUUC-GUGCCAUGGCUCGUGAUGACCGAAUGCU
AATM01000125.1/1699-1489   AUCUCACAAAAAAUAAAGUCGCCAUGGUGUCGUUCCAACAGUUGAGUUUGUAGGACAAAUUUGGUCCUGCAGUUCGUGCUGAUAUGGUCGACUUCCUCUUGUGAGGAGUGGCGCAGAUCAAGCUGGGUUGACCAGCGUCAUAGCUUAAAACCAUCGUGAAGUCGUUGCUUUUGCAGAAUGGCUCGUGAUGACCGAAUGCU
CU329671.1/1917406-1917613 AUCUCACAA--AAUAAUGAAUUACUGAUGUCAAAAAGUCUGCUCUCUUCUAACGCGGUUAUAAUAUAGAACCGUAUUAAUGGUUGCAGCUUUUUCCUCUUCAUGGAAUCGGUAUAGAUUAUGUCGGGGAGACCGACAGCAUAGCUUAAAACCAUCGUGAAGUCGUUGCUUC-GUGCCAUGGCUCGUGAUGACCGAAUGCU
#=GC SS_cons               :::::::::..:::::::::::::::<<<<<---------<<<-<--<<----<<<<<<_________>>>>>>------>>-->->>>-------------------->>>>>:::::::::::::::::::::::<<-<<<<-------<<<<<<<<-<<<<<-<<___.__>>->>>>>>>>>>>>>------->>>
#=GC RF                    AUCUCACAA..AAUAAuGaauuaaUGguguCaaaaaguCuGcucccUucuaAcgcgguuaUaauauagaaccguauUaaUgaUugcagCuuuUUCCUCUUcaugGaAucGgcacAGAUuAuGucGGGgaGACCgaCagCAuAGCUUAAAACCAUCguGAAGuCgUUgcUUc.GugcaAuGgCUCguGAUGACCGAAUGCU

AJ632006.1/1-208           ACGUACAGUUU
AATM01000125.1/1699-1489   UCGUACAUUUU
CU329671.1/1917406-1917613 ACGUACAGUUU
#=GC SS_cons               >->>:::::::
#=GC RF                    aCGuACAgUUU
//
