# STOCKHOLM 1.0
#=GF ID S_pombe_snR35
#=GF AC RF01438
#=GF DE small nucleolar RNA snR35
#=GF AU Osuch I
#=GF GA 35.0
#=GF NC 34.9
#=GF TC 35.2
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 25.36 -Z 2958934 CM SEQDB
#=GF CL CL00028
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 15716270
#=GF RT Identification and functional analysis of 20 Box H/ACA small nucleolar
#=GF RT RNAs (snoRNAs) from Schizosaccharomyces pombe.
#=GF RA Li SG, Zhou H, Luo YP, Zhang P, Qu LH
#=GF RL J Biol Chem. 2005;280:16446-16455.
#=GF WK Small_nucleolar_RNA
#=GF SQ 4

AJ632004.1/1-172           AUCGUGCGGUUAUA-UACCGACGCCCACAAUUCGUGUUGCUCAC-UUUUCUUUUUCUUUUUCCAUGGAAUGGUUUGAGCGUCAUACGUGGGCCAGAGCCAUAUUGGACAUCUUAGUGCCCUUACAGGAAUAGUCAUAUUGAUACUUUUUCUGUGGGUCGGUAGUUCAGAUAGCU
AATM01000008.1/26054-26225 AUCGUGCGGUUUUAAUACCGAACGCCCACUCUCGUGUUGCUCACCUUUUCGUAUAAAUGGUUGGAAGGUUUUUUCGAGCGUCAACUGUGGGCCAGAGGUACAU-GAACGUCUUAGCACCCUUACAGUUGGAGUCCCAUCU-CCCUUCUUCUGUGGGUCGGUUGUUCAGAUAUCU
AJ577641.1/1-172           AUCGUGCGGUUAUA-UACCGACGCCCACAAUUCGUGUUGCUCAC-UUUUCUUUUUCUUUUUCCAUGGAAUGGUUUGAGCGUCAUACGUGGGCCAGAGCCAUAUUGGACAUCUUAGUGCCCUUACAGGAAUAGUCAUAUUGAUACUUUUUCUGUGGGUCGGUAGUUCAGAUAGCU
CU329671.1/2411190-2411361 AUCGUGCGGUUAUA-UACCGACGCCCACAAUUCGUGUUGCUCAC-UUUUCUUUUUCUUUUUCCAUGGAAUGGUUUGAGCGUCAUACGUGGGCCAGAGCCAUAUUGGACAUCUUAGUGCCCUUACAGGAAUAGUCAUAUUGAUACUUUUUCUGUGGGUCGGUAGUUCAGAUAGCU
#=GC SS_cons               ::::::::::::::.:::::::<<<<<<----------<<<<<-.--<<<<______________>>>>----->>>>>------->>>>>>::::::::::<<<<<<------------<<<<<<<<<-<<___________>>->>>>>>>>>------->>>>>>::::::
#=GC RF                    AUCGUGCGGUUaUA.UACCGAcgcCCacaauUCGUGUUGCuCaC.UUuuCcUuUucuUuuUccaugGaaUggUUuGaGCGUCAuacguGGgcCAGAGccAuAuuGgaCaUCUUAGugCCCuuaCaGgaguaGUCauAUugAuaCuUcucCuGuggGUCGGUaGuuCagAUAgCU
//
