# STOCKHOLM 1.0
#=GF ID snoR143
#=GF AC RF01432
#=GF DE small nucleolar RNA snoR143
#=GF AU Osuch I
#=GF GA 50.0
#=GF NC 49.9
#=GF TC 50.0
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 29.84 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 19357091
#=GF RT Mining small RNA sequencing data: a new approach to identify small
#=GF RT nucleolar RNAs in Arabidopsis.
#=GF RA Chen HM, Wu SH
#=GF RL Nucleic Acids Res. 2009;37:e69.
#=GF WK Small_nucleolar_RNA
#=GF SQ 3

AC079041.4/65653-65823 UUGCACUAUGUAUCGAAGGCUA-UGUCAAAUUACAGUGACAUAGUC---UUUAAUGCAAAAGUGCAGAAAGAGAGAGCUG---UUAAAUCAGCAA--GCGGCCAGACAACCGUCGGGAUAGAUCCACAGGUGAAGCGGAUUGAUUCCUCUGCUUUCAGCUACUAAAUCUAUCCUACAUAC
AC146468.1/16214-16379 CACCAGAAAUCAGUUAGUCCUACUUUCAUUUUAUGAUGGUAGGGUG---UUAAA---ACUGGUGCACAAAGAAAGUACUG---CUCUUGAAGCAGUGGCGGCCAGACAACCGUUGAGAUAGAUCCACAGAUGAA---CAACCUUUCUGUUGCUUGU--CUACUAAUUCUAUCUCACAUUA
AP009260.1/55179-55007 CUGCAC-ACGCAUA-AAGGCUA-UGCUUAAAUUUAUUGAAAUAGUGGAGUCUUGAGCGCUAGUGCAAAGAUGGAAUGCUGAGUUUAAACUCAGCG--GCGGCCAGACAACCGUUGAGAUGAAUCCACAGAUGGGUUCCAUUUACAGUGGUACUUGU--CUACUAAUUUCAUCUCAUAAUU
#=GC SS_cons           :<<<<<--<<<-<<<<<<<<<<.<<<<<________>>>>>>>>>>...>>>>>->>>--->>>>>::::::::::::::...::::::::::::..:::::::::::::::::<<<<<<<<---------<<<<<<<__________>>>>>>>-..-------->>>>>>>>::::::
#=GC RF                cuGCAcaAcGcAuuuaaggCua.UgucaaauUauaaugacAuaGuc...uuaaaagCgcuagUGCaaAaAgagAgugCUG...uUaaauuagcag..GCGGCCAGACAACCGUuGgGAUgGAUCCACAGaUgaagcgcAuuuauucuggcgcuugu..CUACUAAuUCcAUCcCAcAuuu
//
