# STOCKHOLM 1.0
#=GF ID snoR135
#=GF AC RF01431
#=GF DE small nucleolar RNA snoR135
#=GF AU Osuch I
#=GF GA 45.0
#=GF NC 44.8
#=GF TC 45.0
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 27.97 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF RN [1]
#=GF RM 19357091
#=GF RT Mining small RNA sequencing data: a new approach to identify small
#=GF RT nucleolar RNAs in Arabidopsis.
#=GF RA Chen HM, Wu SH
#=GF RL Nucleic Acids Res. 2009;37:e69.
#=GF WK Small_nucleolar_RNA
#=GF SQ 6

AK229744.1/602-742         AAUGCAGAGAUUGUGUGUAUCGGCUUAGUGCG---AU--GUAAUGCGCUUUG--UA--CGAAAGAUUUCUCUGCGACAUUAA----UU---U-GGGGCAGAUGGGCAGUUGUGAUUCAA---UGU--CAAUUG----AAUAGCUCAACAAUCAUCUUCCCCACAAUU
AASG02004941.1/7144-6992   UGAGCAGGGAUUGUGUGUAUCGGCGUUGUGCUUUAAU--AAUAUGCGCAUUGAAUC--CGAAAGUGUUCCCUGCAAUAUAAAAAAUUC---A-GGGGAAGAUGGGCAGUUGUGUUUCAAGUUUGC--CAUUGA----AAUUUCUCAACAAUCAUCUUCCCCAUAUUU
AARH01009459.1/70100-69949 UAAGCAGGGAUUGUGUGUAUCGGCGCUGUGCU---AUAAUAAAUGCACUCUGAAUC--CGAAAGAGUUCCCUGCUAUAUUGA----UUUCUU-UGGGAAGAUGGGCAGUUGUGUUUCAU---UCU--CUUUUGUUGAAACUUUUCAACAAUCAUCUUCCCUACAUCA
EF533698.1/29127-29267     AGAGCGGGGAUUGUGUGUAUCGGUGUUGUGCU---ACAAUCAAUGCACUCU---UC--CGAAAGAGUUCCCUGCAAUAUUGU----CU---U-GAGAAAG-UGGGCAGUUGUGUUUUCA---UCU--UUUGUU----GAAAUCACAACAAUCAUUUUCCCUACAUCU
AP006458.4/149212-149071   CCUGCAGG-AUAGUGUGUAUCGGCCUAAUGCC---UUAUGCUAUGCAUUUUU--UG-CCGAAAGUGUUUCCUGCUAUAUCAA----UU---A-GAGGAAAGUGGGCAGUUG-GGUUAAG---CUU--AUUCUG----UUUUCUCCAACAAUCAUUUUCCUCUCAUUA
FN596494.1/3010183-3010330 GAAGCAGGGAUUGUGUGUAUCGGCGUUGUGCU---ACAAUUGAUGCGCGAUG--AAGCCGAAAGAGUUCCCUGCAAUAAUGA----UC---GAGGGGAAGGUGGGCAGUUGGGUUUCAU---CUCUACCAUUG----AAAUUCUCAACAAUCAUCUUCCCCACNNNN
#=GC SS_cons               :::<<<<<<<----<<<<<<____________..._______>>>>>>----..--..--------->>>>>>>::::::::....::...:.<<<<<<<<<<<---<<<<________...___..______...._______>>>>-->>>>>>>>>>>::::::
#=GC RF                    uaaGCaGGGAUUGUGuGuAUCGGCgUuGUGCu...AuAauuaAUgCaCuuUg..Ua..CGAAAGaGUUCCCuGCaAUAUuaA....Uu...u.ggGGaAgaUGgGCAGUUGuGuUUcAa...uuu..cuuuUg....aAuuucuCAACAAuCAucUuCCccACAuuu
//
