# STOCKHOLM 1.0
#=GF ID snoR128
#=GF AC RF01428
#=GF DE small nucleolar RNA snoR128
#=GF AU Osuch I
#=GF GA 40.0
#=GF NC 39.8
#=GF TC 40.0
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 19357091
#=GF RT Mining small RNA sequencing data: a new approach to identify small
#=GF RT nucleolar RNAs in Arabidopsis.
#=GF RA Chen HM, Wu SH
#=GF RL Nucleic Acids Res. 2009;37:e69.
#=GF WK Small_nucleolar_RNA
#=GF SQ 5

AF317971.1/6-97              UUGCAAUGAUGAGAUCUU-AUAAUGAAAUUGAAAGUGUUU-------ACACUUCAUGA-ACGGUCGACAAAAUAGUCGAACCUGAGCGGUUAGCUGAGCAA
AM451544.1/694-602           UUGCAAUGAUGAG--UAU-AGGAACUUAUUGAAAGUGUCUCA-----AUACUUGAUGAGAUUGUCGACAACCUUGUCGAUCCUGAGCGGUUACCUGAGCAA
AASG02006843.1/13326-13243   UUGCUAUGAUGAG--UGG-UACAAACUAAUGAAAGUUUAUACAGCAAUUGCUUCUUGA-AA-------------UUUAAUCCUGAGCGGUUAUCUGAGCAA
AARH01002655.1/240508-240577 UUGCUAUGAUGAG--UAU-GAAAAGGUUAUGAGAGUUUUG--------------AUGA-AA-------------UUCAUUCCUGAGCGGUUAUCUGAGCAA
AC172879.2/81890-81794       UUGCAGUGAUGAUAACUUUAUGAUUACAAUGAAAGUGUUUUAAAA--ACGCUUAAUGA-ACGGUCGACAAAAU-GUCGAACCUGAGCGGUUAGCUGAGCAA
#=GC SS_cons                 :<<<_________..___._______________________.....___________.______________._______________________>>>:
#=GC RF                      UUGCaAUGAUGAG..uaU.aaaAauauAaUGAAAGUgUuUua.....auaCUUaAUGA.AagGUCGACAAaaU.gUCgAuCCUGAGCGGUUAuCUGAGCAA
//
