# STOCKHOLM 1.0
#=GF ID snoR126
#=GF AC RF01426
#=GF DE small nucleolar RNA snoR126
#=GF AU Osuch I
#=GF GA 39.0
#=GF NC 38.9
#=GF TC 39.2
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.19 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 19357091
#=GF RT Mining small RNA sequencing data: a new approach to identify small
#=GF RT nucleolar RNAs in Arabidopsis.
#=GF RA Chen HM, Wu SH
#=GF RL Nucleic Acids Res. 2009;37:e69.
#=GF WK Small_nucleolar_RNA
#=GF SQ 4

AB018108.1/5630-5526     AGGCGGUGAUGACAAAAAA----CA---UUUCUCGAUGCUGAAACUUACUCGA-GAGACCAAAUCACUCUUGUAAUCUUUCGUGAUGCUUGUU-UUUAUGCGUGUCUGAGCCUA
CU179904.1/61661-61756   AGGCUGUGAUGAACAACAA----CA---UUUCUCGAAUCUGAUAAUUACAAAA-G----CAAAUUAUAUUUG-----CUUUUUGAUGACCGUG-UUUGUGCGUGUCUGAGCCUC
AAAA02010687.1/1542-1640 UGGCUGUGAUGACAAACAAACCUCG---UUUCUCGAUGCUGAGACUUGAUUUGUU----CAAGG---ACCAG-----AACUGUGCUGACCUUAAUUUGUGCGUGUCUGAGCCAC
BK004878.1/4907-4810     UGGCUGUGAGGACUAACUA----CUUUGUUUCUCGAUGCUG------ACUUGA-U----UCAAUCAAUCAAGGACCAAAAAAAUUUGAUGACC-UUUGUGCGUGUCUGAGCCAC
#=GC SS_cons             <<<<_______________....__..._________________________._....__________________________________._______________>>>>:
#=GC RF                  uGGCUGUGAuGAcaAAcAA....Ca...UUUCUCGAUGCUGAaAcUUAcUugA.u....cAAAUcAuucuuGuAauaauuugUgaUGAucgUu.UUUGUGCGUGUCUGAGCCac
//
