# STOCKHOLM 1.0
#=GF ID snoR117
#=GF AC RF01423
#=GF DE small nucleolar RNA snoR117
#=GF AU Osuch I
#=GF GA 42.0
#=GF NC 41.9
#=GF TC 42.1
#=GF SE INFERNAL
#=GF SS Predicted; RNAalifold; Osuch I
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 26.79 -Z 2958934 CM SEQDB
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF RN [1]
#=GF RM 19357091
#=GF RT Mining small RNA sequencing data: a new approach to identify small
#=GF RT nucleolar RNAs in Arabidopsis.
#=GF RA Chen HM, Wu SH
#=GF RL Nucleic Acids Res. 2009;37:e69.
#=GF WK Small_nucleolar_RNA
#=GF SQ 6

AC007202.3/26176-26247       AGCCUGUGAUGU--UUGAGAUUGUCCGUACCAUCUGAG----UUUCUCCUUGACGA--------------UUACCUCCA-CUUUCUGAGGCUU
AP006084.1/89100-89169       GGCCUGUGAUGC--AUCAAUUUGUCCGUACCAUCUGAG----AUUUCUCUGAUCGA--------------UA--CUCCA-UUUUCUGAAUCUG
AARH01004368.1/118009-118095 AGCCUGUGAUGCA-UCAAAAUUGUCCGUACCAUCUGAG----AUCUUUCUGUAUCUUUGAUGACACACAAACUUGUAUA-GAUUCUGAGGCUU
AASG02001221.1/37908-37990   GGCCUGUGAUGGAAAAAUAAUUGUCCGUACCAUCUGAAGA--UAUCUGUCUUUUGAUGCAUCU-------CUUUACCUA-GAUUCUGAGGCCU
AC189312.2/67271-67350       GGUCUGUGAUGU--UUGAGAUUGUCCGUACCAUCUGAGAGUUUAUCUCGUUGAUGAGCUG----------UAUGCUCUU-GUUUCUGAGGCUU
AM460349.2/3821-3740         GGCCGGUGAUGCA-CAAGAAUUGUCCGUACCAUCUGAG----AUCUCUUUCCUUGAUGUGAGAU------UCAUCUCUAGCUUUCUGAGGCCU
#=GC SS_cons                 <<<<_________.________________________...._____________________......._________.________>>>>:
#=GC RF                      gGcCUGUGAUGcA.uuaaAAUUGUCCGUACCAUCUGAG....auUuUucUuuuUGAUguauga.......uuuucUCUA.guUUCUGAGgCcU
//
