INFERNAL1/a [1.1.4 | Dec 2020] NAME Flavivirus_SLIV ACC RF01415 DESC Flavivirus 3'UTR stem loop IV STATES 239 NODES 63 CLEN 75 W 92 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:17:15 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 1.840820 CKSUM 1971361692 NULL 0.000 0.000 0.000 0.000 GA 38.60 TC 38.60 NC 38.10 EFP7GF -8.0716 0.71898 ECMLC 0.54740 -10.08480 0.94643 1600000 503129 0.002385 ECMGC 0.37279 -15.84582 -3.06916 1600000 46840 0.008540 ECMLI 0.46660 -9.79371 2.47065 1600000 366811 0.003271 ECMGI 0.39108 -11.70789 0.34086 1600000 44510 0.008987 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 92 111 -6.911 -7.118 -0.055 -5.532 IL 1 1 2 1 4 6 34 95 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 6 33 94 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 6 32 92 111 -7.930 -0.021 -6.584 -1.659 1.601 -2.480 -1.089 D 4 2 3 5 3 3 29 90 110 -6.174 -1.687 -0.566 IL 5 5 3 5 3 6 32 93 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 5 31 91 110 -7.930 -0.021 -6.584 -0.718 1.283 -1.772 -0.586 D 7 5 3 8 3 3 29 89 109 -6.174 -1.687 -0.566 IL 8 8 3 8 3 5 32 92 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 5 30 89 109 -7.930 -0.021 -6.584 1.074 -0.705 -0.758 -0.534 D 10 8 3 11 3 2 28 88 108 -6.174 -1.687 -0.566 IL 11 11 3 11 3 5 31 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 4 29 88 108 -8.323 -0.019 -6.641 0.608 -0.681 -0.061 -0.162 D 13 11 3 14 3 2 28 87 107 -5.620 -0.734 -1.403 IL 14 14 3 14 3 4 30 89 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 77 - U - - MR 15 14 3 17 2 3 28 87 107 -8.316 -0.005 -0.378 -0.937 -1.403 1.220 D 16 14 3 17 2 2 28 87 106 -4.432 -0.068 IR 17 17 3 17 2 3 29 88 108 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 79 19 2 27 86 106 [ BEGR 47 ] - - - - - - S 19 18 1 20 3 0 0 33 52 -7.930 -0.021 -6.584 IL 20 20 2 20 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - g - - - ML 21 20 2 23 3 1 1 33 52 -7.930 -0.021 -6.584 -0.088 -0.356 0.391 -0.049 D 22 20 2 23 3 0 0 32 51 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - u - - - ML 24 23 3 26 3 1 1 32 51 -7.930 -0.021 -6.584 0.346 -0.768 -0.500 0.521 D 25 23 3 26 3 0 0 31 50 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 60 - G - - - ML 27 26 3 29 3 1 1 31 50 -7.930 -0.021 -6.584 -0.885 -1.658 1.452 -1.303 D 28 26 3 29 3 0 0 30 49 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 61 - C - - - ML 30 29 3 32 5 1 1 30 49 -7.064 -0.040 -6.879 -7.091 -7.983 -1.659 1.601 -2.480 -1.089 D 31 29 3 32 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 32 32 3 32 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 62 76 C G - - MP 33 32 3 37 6 2 2 29 48 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.485 -4.385 -4.185 -0.623 -2.918 -4.606 3.531 -3.721 -4.233 -0.373 -4.500 -2.331 0.603 -4.558 -0.623 -3.075 ML 34 32 3 37 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 63 75 C G - - MP 39 38 6 43 6 2 2 27 46 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.485 -4.385 -4.185 -0.623 -2.918 -4.606 3.531 -3.721 -4.233 -0.373 -4.500 -2.331 0.603 -4.558 -0.623 -3.075 ML 40 38 6 43 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 64 74 C G - - MP 45 44 6 49 6 2 2 25 44 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.485 -4.385 -4.185 -0.623 -2.918 -4.606 3.531 -3.721 -4.233 -0.373 -4.500 -2.331 0.603 -4.558 -0.623 -3.075 ML 46 44 6 49 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 65 73 A U - - MP 51 50 6 55 6 2 2 23 42 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.738 -2.783 -3.760 3.296 -4.072 -5.129 0.224 -3.806 -3.654 1.136 -4.199 -0.268 -0.193 -4.326 -1.717 -2.597 ML 52 50 6 55 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 66 72 G C - - MP 57 56 6 61 4 2 2 21 40 -6.911 -7.118 -0.055 -5.532 -4.679 -3.064 -4.772 0.242 -5.144 -4.669 -0.524 -5.010 -4.286 3.623 -4.628 -0.761 -0.911 -4.427 -2.558 -3.650 ML 58 56 6 61 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 67 - G - - - ML 63 62 6 65 3 1 1 18 36 -7.930 -0.021 -6.584 -1.508 -2.716 1.706 -2.103 D 64 62 6 65 3 0 0 17 36 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 68 - a - - - ML 66 65 3 68 3 1 1 16 35 -7.930 -0.021 -6.584 0.849 -0.902 -0.804 0.125 D 67 65 3 68 3 0 0 16 34 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 69 - G - - - ML 69 68 3 71 3 1 1 15 33 -7.930 -0.021 -6.584 -1.508 -2.716 1.706 -2.103 D 70 68 3 71 3 0 0 15 33 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 70 - G - - - ML 72 71 3 74 3 1 1 13 32 -7.930 -0.021 -6.584 -1.508 -2.716 1.706 -2.103 D 73 71 3 74 3 0 0 13 32 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 71 - A - - - ML 75 74 3 77 2 1 1 1 1 * 0.000 1.704 -2.303 -1.942 -1.839 D 76 74 3 77 2 0 0 0 0 * 0.000 IL 77 77 3 77 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 62 ] - - - - - - E 78 77 3 -1 0 0 0 0 0 [ BEGL 7 ] - - - - - - S 79 18 1 80 4 0 13 67 86 -0.045 -6.815 -6.222 -6.862 [ MATP 8 ] 5 57 u a - - MP 80 79 1 84 6 2 14 67 86 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.448 -3.395 -3.385 0.297 -2.441 -4.012 2.352 -3.115 -3.396 0.545 -3.819 -1.410 2.446 -3.617 0.365 -2.292 ML 81 79 1 84 6 1 10 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 1 84 6 1 10 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 1 84 6 0 6 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 11 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 12 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 56 G C - - MP 86 85 6 90 6 2 12 65 84 -9.094 -9.033 -0.157 -3.429 -8.089 -8.484 -3.759 -2.567 -3.799 0.938 -4.393 -4.466 0.090 -4.118 -3.720 3.103 -4.145 1.301 -0.197 -3.839 -1.874 -2.692 ML 87 85 6 90 6 1 8 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 10 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 6 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 11 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 11 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 55 u a - - MP 92 91 6 96 4 2 11 63 82 -6.480 -7.725 -0.106 -4.179 -2.200 -2.201 -2.351 1.002 -2.181 -3.164 1.563 -2.581 -2.408 1.325 -2.945 -0.522 2.202 -1.388 -0.174 -0.934 ML 93 91 6 96 4 1 7 61 80 -4.203 -6.327 -3.087 -0.294 -0.624 -0.793 -1.292 1.242 MR 94 91 6 96 4 1 9 62 81 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 6 60 79 -12.737 -14.007 -2.036 -0.404 IL 96 96 5 96 4 1 9 62 81 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 10 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 54 - G - - MR 98 97 6 100 3 1 11 61 80 -7.995 -0.024 -6.312 -0.765 -1.835 1.434 -1.222 D 99 97 6 100 3 0 5 59 78 -7.801 -2.979 -0.203 IR 100 100 3 100 3 1 10 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - c - - MR 101 100 3 103 5 1 10 60 79 -6.760 -0.049 -6.576 -6.788 -7.679 -0.572 0.916 -1.338 0.063 D 102 100 3 103 5 0 5 58 78 -6.300 -0.323 -3.927 -5.358 -3.352 IR 103 103 3 103 5 1 8 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 52 C G - - MP 104 103 3 108 6 2 12 59 78 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.043 -4.091 -4.059 -0.677 -2.439 -3.155 3.610 -4.064 -4.133 -0.523 -4.531 -2.332 0.091 -4.290 -1.309 -3.143 ML 105 103 3 108 6 1 6 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 3 108 6 1 6 57 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 3 108 6 0 2 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 7 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 7 58 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 51 A U - - MP 110 109 6 114 6 2 10 57 76 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.448 -2.903 -2.016 3.244 -3.636 -4.515 0.379 -3.640 -3.555 1.082 -4.077 -0.666 0.056 -3.771 -1.457 -2.498 ML 111 109 6 114 6 1 6 55 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 6 55 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 2 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 7 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 7 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 50 G C - - MP 116 115 6 120 6 2 9 55 74 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.271 -2.842 -4.327 0.566 -4.919 -4.570 -0.313 -4.663 -4.072 3.484 -4.444 0.069 -0.615 -4.141 -2.320 -3.222 ML 117 115 6 120 6 1 5 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 5 53 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 2 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 6 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 6 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 49 g c - - MP 122 121 6 126 6 2 7 53 72 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.173 -1.571 -3.209 2.022 -3.609 -4.027 0.623 -3.566 -3.303 2.647 -3.755 0.213 0.355 -3.290 -1.260 -2.192 ML 123 121 6 126 6 1 4 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 4 51 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 2 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 5 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 5 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 48 C G - - MP 128 127 6 132 4 2 5 51 70 -6.831 -8.076 -0.083 -4.530 -4.082 -4.006 -3.847 -0.242 -2.639 -4.316 3.307 -3.408 -3.878 0.017 -4.197 -1.976 1.241 -4.168 -0.321 -2.724 ML 129 127 6 132 4 1 3 50 69 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 3 50 69 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 1 48 67 -12.737 -14.007 -2.036 -0.404 IL 132 132 5 132 4 1 4 50 69 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 4 50 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 47 - a - - MR 134 133 6 136 3 1 3 49 68 -8.323 -0.019 -6.641 0.649 -0.929 -0.095 -0.044 D 135 133 6 136 3 0 1 47 66 -6.390 -1.568 -0.620 IR 136 136 3 136 3 1 3 49 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 46 - C - - MR 137 136 3 139 2 1 2 48 67 -8.316 -0.005 -1.659 1.601 -2.480 -1.089 D 138 136 3 139 2 0 1 47 66 -4.432 -0.068 IR 139 139 3 139 2 1 2 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 140 139 3 141 185 0 1 47 66 [ BEGL 21 ] - - - - - - S 141 140 1 142 4 0 0 28 46 -0.045 -6.815 -6.222 -6.862 [ MATP 22 ] 13 26 C G - - MP 142 141 1 146 6 2 2 28 46 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.485 -4.385 -4.185 -0.623 -2.918 -4.606 3.531 -3.721 -4.233 -0.373 -4.500 -2.331 0.603 -4.558 -0.623 -3.075 ML 143 141 1 146 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 1 146 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 1 146 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 14 25 A U - - MP 148 147 6 152 6 2 2 26 44 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.519 -2.582 -3.581 3.065 -3.957 -4.851 0.341 -3.700 -3.480 1.674 -4.021 -0.102 -0.003 -4.023 -1.594 -2.427 ML 149 147 6 152 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 6 152 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 24 C G - - MP 154 153 6 158 6 2 2 24 42 -9.094 -9.033 -0.042 -7.809 -8.089 -5.882 -4.485 -4.385 -4.185 -0.623 -2.918 -4.606 3.531 -3.721 -4.233 -0.373 -4.500 -2.331 0.603 -4.558 -0.623 -3.075 ML 155 153 6 158 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 16 23 g c - - MP 160 159 6 164 6 2 2 22 40 -9.073 -9.012 -0.058 -6.226 -5.667 -8.464 -2.745 -2.288 -2.819 2.105 -2.895 -2.458 1.084 -3.138 -2.942 2.279 -3.414 -0.258 0.794 -2.879 -0.729 -1.907 ML 161 159 6 164 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 19 38 -9.356 -8.055 -3.852 -4.534 -4.551 -0.252 IL 164 164 5 164 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 17 22 c g - - MP 166 165 6 170 4 2 2 20 38 -6.755 -6.962 -0.061 -5.376 -2.384 -1.720 -2.519 1.296 -1.702 -3.341 2.207 -2.650 -2.554 1.297 -3.090 -0.574 1.504 -2.654 -0.075 -1.593 ML 167 165 6 170 4 1 1 20 39 -3.876 -4.059 -0.460 -2.788 0.181 0.058 -0.488 0.153 MR 168 165 6 170 4 1 1 20 39 -5.081 -4.110 -1.978 -0.602 0.061 -0.388 -0.533 0.586 D 169 165 6 170 4 0 0 19 38 -4.858 -4.539 -2.555 -0.411 IL 170 170 5 170 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 171 171 6 171 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - u - - - ML 172 171 6 174 3 1 1 16 35 -7.820 -0.023 -6.474 0.096 -0.040 -0.697 0.424 D 173 171 6 174 3 0 0 15 34 -6.911 -1.412 -0.699 IL 174 174 3 174 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - u - - - ML 175 174 3 177 3 1 1 15 33 -7.873 -0.254 -2.669 0.123 -0.512 -0.843 0.725 D 176 174 3 177 3 0 0 14 33 -6.608 -2.121 -0.396 IL 177 177 3 177 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - u - - - ML 178 177 3 180 3 1 1 13 32 -7.645 -0.026 -6.299 0.245 -0.407 -0.490 0.432 D 179 177 3 180 3 0 0 12 31 -7.565 -2.422 -0.307 IL 180 180 3 180 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - a - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 0.614 -1.169 0.435 -0.572 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 31 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 32 ] - - - - - - S 185 140 1 186 3 0 0 32 50 -7.930 -0.021 -6.584 IL 186 186 2 186 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - C - - - ML 187 186 2 189 5 1 1 32 50 -7.064 -0.040 -6.879 -7.091 -7.983 -1.659 1.601 -2.480 -1.089 D 188 186 2 189 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 189 189 3 189 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 28 45 C G - - MP 190 189 3 194 6 2 2 31 49 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -4.080 -4.004 -3.846 -0.240 -2.638 -4.315 3.306 -3.407 -3.876 0.019 -4.196 -1.974 1.244 -4.166 -0.319 -2.723 ML 191 189 3 194 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 3 194 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 3 194 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 29 44 A U - - MP 196 195 6 200 6 2 2 29 47 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.738 -2.783 -3.760 3.296 -4.072 -5.129 0.224 -3.806 -3.654 1.136 -4.199 -0.268 -0.193 -4.326 -1.717 -2.597 ML 197 195 6 200 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 30 43 C G - - MP 202 201 6 206 6 2 2 27 45 -9.094 -9.033 -0.021 -7.809 -8.089 -8.484 -3.938 -3.883 -3.739 -0.131 -2.572 -4.234 3.225 -3.328 -3.766 0.122 -4.106 -1.877 1.242 -4.036 0.176 -2.621 ML 203 201 6 206 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 31 42 u a - - MP 208 207 6 212 4 2 2 25 43 -6.911 -3.000 -0.243 -5.532 -3.628 -3.550 -3.509 0.164 -2.480 -4.085 2.275 -3.181 -3.526 0.436 -3.917 -1.536 2.685 -3.770 -0.162 -2.404 ML 209 207 6 212 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 23 41 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 24 43 -1.761 -0.600 -4.461 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - C - - - ML 214 213 6 216 3 1 1 22 40 -7.930 -0.021 -6.584 -1.007 1.202 -1.822 -0.123 D 215 213 6 216 3 0 0 21 40 -6.174 -1.687 -0.566 IL 216 216 3 216 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - u - - - ML 217 216 3 219 3 1 1 21 39 -7.930 -0.021 -6.584 -0.447 -0.002 -1.289 0.895 D 218 216 3 219 3 0 0 20 38 -6.174 -1.687 -0.566 IL 219 219 3 219 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 34 - G - - - ML 220 219 3 222 3 1 1 19 38 -7.930 -0.021 -6.584 -1.508 -2.716 1.706 -2.103 D 221 219 3 222 3 0 0 18 37 -6.174 -1.687 -0.566 IL 222 222 3 222 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 35 - C - - - ML 223 222 3 225 3 1 1 18 36 -3.885 -0.117 -6.584 -1.659 1.601 -2.480 -1.089 D 224 222 3 225 3 0 0 16 35 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 19 37 -1.636 -0.669 -4.336 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - g - - - ML 226 225 3 228 3 1 1 16 35 -7.930 -0.021 -6.584 -0.112 -0.741 0.490 0.100 D 227 225 3 228 3 0 0 16 34 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - G - - - ML 229 228 3 231 3 1 1 15 33 -7.930 -0.021 -6.584 -0.311 -1.853 1.321 -1.257 D 230 228 3 231 3 0 0 15 33 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - A - - - ML 232 231 3 234 3 1 1 13 32 -7.930 -0.021 -6.584 1.247 -1.485 -0.414 -0.948 D 233 231 3 234 3 0 0 13 32 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - G - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 -0.400 -1.456 1.253 -1.015 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Flavivirus_SLIV ACC RF01415 DESC Flavivirus 3'UTR stem loop IV LENG 75 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:17:15 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 20 EFFN 2.954102 CKSUM 1971361692 STATS LOCAL MSV -8.3185 0.71898 STATS LOCAL VITERBI -9.3270 0.71898 STATS LOCAL FORWARD -3.3243 0.71898 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62076 1.23674 1.15694 1.62214 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 0.00000 * 1 3.17862 0.14522 3.75115 2.65875 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 2 2.16909 0.33361 3.04113 2.10699 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 3 0.55008 1.92170 2.01443 1.94251 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 4 0.93238 1.90381 1.39552 1.56218 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 5 2.55716 1.08259 2.31926 0.72276 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 6 2.14211 2.92949 0.26502 2.78100 6 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 7 1.85889 1.61967 1.70337 0.76761 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 8 3.61915 0.11449 3.51923 2.96139 8 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 9 0.20208 3.15298 2.38516 3.03307 9 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 10 2.45945 3.25000 0.18423 3.12358 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 11 1.14363 2.42076 0.71588 2.26604 11 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 12 3.03386 0.34521 2.81582 1.69313 12 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 13 3.49978 0.17897 3.29881 2.33576 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 14 0.39656 2.92542 1.55044 2.78752 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 15 3.48687 0.18000 3.29221 2.33340 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.08144 4.05175 2.79990 1.46634 0.26236 1.09861 0.40547 16 1.09229 1.95868 0.98529 1.89594 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.09078 4.00736 2.67950 1.46634 0.26236 1.70417 0.20080 17 1.58698 1.06989 1.65913 1.33900 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.03905 3.95562 3.95562 1.46634 0.26236 2.11261 0.12888 18 1.33615 1.37364 1.90994 1.09103 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03905 3.95562 3.95562 1.46634 0.26236 0.86075 0.54964 19 1.30818 1.79759 2.04109 0.83447 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.24875 4.00232 1.59973 1.46634 0.26236 1.75318 0.19022 20 1.21267 1.68891 1.73649 1.07370 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04580 3.79938 3.79938 1.46634 0.26236 1.88070 0.16544 21 0.91888 2.37614 0.99854 1.96820 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.14029 3.83052 2.21464 1.46634 0.26236 0.14940 1.97490 22 1.51940 1.76021 0.98077 1.45190 22 g - - > 1.38629 1.38629 1.38629 1.38629 0.03812 3.97904 3.97904 1.46634 0.26236 1.02014 0.44714 23 2.13272 1.06779 1.83532 0.97245 23 u - - > 1.38629 1.38629 1.38629 1.38629 0.03704 4.00736 4.00736 1.46634 0.26236 0.45232 1.01102 24 2.61011 3.45312 0.15585 3.24065 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 25 2.99486 1.78147 2.72382 0.33415 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 26 2.60450 3.44478 0.15708 3.23105 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 27 3.17862 0.14522 3.75115 2.65875 27 C - - , 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 28 3.05028 0.34391 2.82228 1.69177 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 29 0.24392 3.12312 2.08226 3.04106 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 30 2.92511 0.40384 2.69736 1.55491 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 31 2.73033 1.15775 2.49115 0.62028 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 32 2.43950 0.40946 3.03728 1.60533 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 33 1.84111 1.35178 2.47345 0.69658 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 34 2.97740 3.89022 0.10837 3.46303 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 35 3.17862 0.14522 3.75115 2.65875 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.12081 2.33915 4.05175 0.32848 1.27304 1.09861 0.40547 36 1.55306 1.98260 0.93360 1.35653 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 37 1.74594 3.02076 0.34993 2.63085 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 38 0.42751 2.69168 1.69075 2.34635 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 39 1.84016 2.59164 0.39406 2.38603 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.18682 1.87719 4.05175 0.21361 1.64849 1.09861 0.40547 40 0.69952 2.65786 1.04894 2.49169 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 41 1.91278 2.85967 0.31922 2.68339 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 42 3.26791 2.40916 2.93192 0.20000 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 43 1.90838 2.98529 0.30044 2.80248 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 44 3.17862 0.14522 3.75115 2.65875 46 C - - , 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 45 0.89601 2.14390 1.42722 1.44974 47 a - - , 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 46 1.90785 2.97869 0.30170 2.79392 48 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 47 2.50969 0.82193 2.22834 0.99044 49 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 48 3.33905 0.25531 3.08013 1.93866 50 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 49 3.26745 2.62790 2.79720 0.18791 51 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 50 3.08806 3.56764 0.10921 3.51841 52 G - - ) 1.38629 1.38629 1.38629 1.38629 0.36491 4.05175 1.24359 1.46634 0.26236 1.09861 0.40547 51 2.01721 0.59049 2.57494 1.44071 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.04889 3.73573 3.73573 1.46634 0.26236 2.92205 0.05533 52 2.32283 3.14254 0.23227 2.71656 54 G - - - 1.38629 1.38629 1.38629 1.38629 0.04889 3.73573 3.73573 1.46634 0.26236 2.92205 0.05533 53 1.05891 1.67185 1.36852 1.55692 55 a - - ) 1.38629 1.38629 1.38629 1.38629 0.04889 3.73573 3.73573 1.46634 0.26236 0.11389 2.22891 54 3.00072 0.53112 2.73554 1.21253 56 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 55 0.89283 2.48265 0.89567 2.31620 57 a - - ) 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 56 1.53519 1.63255 1.00621 1.49811 58 g - - - 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 57 1.12835 2.02301 1.75201 0.99223 59 u - - - 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 58 2.35772 2.78931 0.25247 2.70275 60 G - - - 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 59 3.17862 0.14522 3.75115 2.65875 61 C - - - 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 60 3.49510 0.17934 3.29642 2.33491 62 C - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 61 3.49024 0.17973 3.29393 2.33402 63 C - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 62 3.48663 0.18002 3.29208 2.33336 64 C - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 63 0.24458 3.11938 2.08142 3.03594 65 A - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 64 2.76373 3.51449 0.13296 3.45211 66 G - - < 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 65 2.97740 3.89022 0.10837 3.46303 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 66 0.72962 2.13653 2.03614 1.31189 68 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 67 2.97740 3.89022 0.10837 3.46303 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 68 2.97740 3.89022 0.10837 3.46303 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 69 0.11534 3.51426 3.21223 3.24680 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 70 3.63883 0.15882 3.35457 2.45759 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 71 3.25729 2.40755 2.92749 0.20097 73 U - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 72 2.61290 3.45729 0.15524 3.24545 74 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 73 2.61315 3.45766 0.15518 3.24588 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 74 2.61279 3.45713 0.15526 3.24526 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 4.05175 4.05175 1.46634 0.26236 1.09861 0.40547 75 1.79058 2.26157 2.62752 0.42054 77 U - - : 1.38629 1.38629 1.38629 1.38629 0.01786 4.03421 * 1.46634 0.26236 0.00000 * //