INFERNAL1/a [1.1.5 | Sep 2023] NAME Flavivirus_SLIV ACC RF01415 DESC Flavivirus 3'UTR stem loop IV STATES 239 NODES 66 CLEN 75 W 92 ALPH RNA RF no CONS yes MAP yes DATE Mon Aug 5 15:38:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/RF01415/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 21 EFFN 2.073853 CKSUM 589706026 NULL 0.000 0.000 0.000 0.000 GA 54.50 TC 63.40 NC 39.10 EFP7GF -7.9731 0.71895 ECMLC 0.59462 -9.86086 0.37935 1600000 529206 0.002268 ECMGC 0.39200 -15.91856 -3.78815 1600000 46471 0.008608 ECMLI 0.48061 -10.32715 1.74549 1600000 397241 0.003021 ECMGI 0.40811 -11.85591 -0.36028 1600000 43608 0.009173 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 92 112 -7.006 -7.213 -0.123 -3.892 IL 1 1 2 1 4 6 34 95 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 6 33 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 7 33 92 112 -7.954 -0.021 -6.608 -1.715 1.617 -2.538 -1.134 D 4 2 3 5 3 3 29 90 110 -6.681 -2.194 -0.374 IL 5 5 3 5 3 6 33 94 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 6 32 91 111 -7.954 -0.021 -6.608 -0.703 1.282 -1.782 -0.593 D 7 5 3 8 3 2 29 89 109 -6.681 -2.194 -0.374 IL 8 8 3 8 3 5 32 93 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 6 31 90 110 -7.954 -0.021 -6.608 1.113 -0.791 -0.753 -0.588 D 10 8 3 11 3 2 28 88 109 -6.681 -0.958 -1.073 IL 11 11 3 11 3 5 31 91 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 5 30 89 109 -8.018 -0.020 -6.672 0.572 -0.732 0.054 -0.195 D 13 11 3 14 3 2 27 87 107 -6.174 -1.687 -0.566 IL 14 14 3 14 3 4 30 90 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 5 29 88 108 -8.018 -0.020 -6.672 -0.519 -0.133 -0.980 0.913 D 16 14 3 17 3 2 27 86 106 -6.174 -1.687 -0.566 IL 17 17 3 17 3 4 29 89 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 4 28 87 107 -8.018 -0.020 -6.672 -1.696 -2.934 1.749 -2.321 D 19 17 3 20 3 1 26 85 105 -6.174 -1.687 -0.566 IL 20 20 3 20 3 4 28 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 3 27 86 106 -8.405 -0.018 -6.723 -1.586 -1.565 -2.325 1.646 D 22 20 3 23 3 1 26 84 104 -5.620 -0.734 -1.403 IL 23 23 3 23 3 3 27 86 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 77 - U - - MR 24 23 3 26 2 2 26 85 105 -8.421 -0.004 -0.435 -1.009 -1.494 1.268 D 25 23 3 26 2 1 25 84 104 -4.432 -0.068 IR 26 26 3 26 2 2 26 85 105 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 9 ] - - - - - - B 27 26 3 103 28 1 25 84 103 [ BEGR 45 ] - - - - - - S 28 27 1 29 3 0 0 38 58 -8.018 -0.429 -1.980 IL 29 29 2 29 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 53 - c - - - ML 30 29 2 32 3 1 1 39 58 -7.615 -0.026 -6.269 -0.618 0.953 -1.390 0.044 D 31 29 2 32 3 0 0 36 56 -7.914 -3.427 -0.147 IL 32 32 3 32 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 54 - G - - - ML 33 32 3 35 3 1 1 37 57 -7.615 -0.026 -6.269 -0.845 -1.932 1.475 -1.317 D 34 32 3 35 3 0 0 36 55 -7.914 -3.427 -0.147 IL 35 35 3 35 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 55 - a - - - ML 36 35 3 38 3 1 1 36 55 -7.615 -0.026 -6.269 0.759 -0.437 -0.844 0.017 D 37 35 3 38 3 0 0 35 54 -7.914 -0.334 -2.306 IL 38 38 3 38 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - u - - - ML 39 38 3 41 3 1 1 35 54 -8.018 -0.020 -6.672 -0.759 0.591 -1.549 0.643 D 40 38 3 41 3 0 0 34 53 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - a - - - ML 42 41 3 44 3 1 1 34 53 -8.018 -0.020 -6.672 0.895 -1.431 0.282 -0.854 D 43 41 3 44 3 0 0 33 52 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - g - - - ML 45 44 3 47 3 1 1 33 52 -8.018 -0.020 -6.672 0.011 -0.410 0.392 -0.109 D 46 44 3 47 3 0 0 32 51 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - u - - - ML 48 47 3 50 3 1 1 32 51 -8.018 -0.020 -6.672 0.318 -0.806 -0.368 0.492 D 49 47 3 50 3 0 0 31 50 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 60 - G - - - ML 51 50 3 53 3 1 1 31 50 -8.018 -0.020 -6.672 -1.034 -1.809 1.520 -1.483 D 52 50 3 53 3 0 0 30 49 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 61 - C - - - ML 54 53 3 56 5 1 1 30 48 -7.141 -0.038 -6.956 -7.168 -8.060 -1.873 1.658 -2.701 -1.260 D 55 53 3 56 5 0 0 28 47 -4.959 -0.803 -4.221 -2.596 -2.508 IL 56 56 3 56 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 62 76 C G - - MP 57 56 3 61 6 2 2 29 47 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.671 -4.588 -4.340 -0.809 -3.032 -4.736 3.587 -3.854 -4.394 -0.585 -4.641 -2.536 0.470 -4.732 -0.741 -3.229 ML 58 56 3 61 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 63 75 C G - - MP 63 62 6 67 6 2 2 27 45 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.671 -4.588 -4.340 -0.809 -3.032 -4.736 3.587 -3.854 -4.394 -0.585 -4.641 -2.536 0.470 -4.732 -0.741 -3.229 ML 64 62 6 67 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 64 74 C G - - MP 69 68 6 73 6 2 2 25 43 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.671 -4.588 -4.340 -0.809 -3.032 -4.736 3.587 -3.854 -4.394 -0.585 -4.641 -2.536 0.470 -4.732 -0.741 -3.229 ML 70 68 6 73 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 65 73 A U - - MP 75 74 6 79 6 2 2 23 41 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -3.891 -2.897 -3.902 3.393 -4.290 -5.362 0.016 -3.938 -3.790 0.971 -4.343 -0.357 -0.401 -4.533 -1.924 -2.730 ML 76 74 6 79 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 66 72 G C - - MP 81 80 6 85 4 2 2 21 39 -7.006 -7.213 -0.051 -5.627 -4.851 -3.146 -4.961 0.127 -5.387 -4.736 -0.724 -5.211 -4.399 3.663 -4.728 -0.850 -1.106 -4.539 -2.767 -3.836 ML 82 80 6 85 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 67 - G - - - ML 87 86 6 89 3 1 1 17 36 -8.018 -0.020 -6.672 -1.696 -2.934 1.749 -2.321 D 88 86 6 89 3 0 0 17 36 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 68 - a - - - ML 90 89 3 92 3 1 1 16 35 -8.018 -0.020 -6.672 0.939 -0.980 -0.871 0.041 D 91 89 3 92 3 0 0 16 34 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 69 - G - - - ML 93 92 3 95 3 1 1 15 33 -8.018 -0.020 -6.672 -1.696 -2.934 1.749 -2.321 D 94 92 3 95 3 0 0 15 33 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 70 - G - - - ML 96 95 3 98 3 1 1 13 31 -8.018 -0.020 -6.672 -1.696 -2.934 1.749 -2.321 D 97 95 3 98 3 0 0 13 32 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 71 - A - - - ML 99 98 3 101 2 1 1 1 1 * 0.000 1.741 -2.481 -2.102 -2.034 D 100 98 3 101 2 0 0 0 0 * 0.000 IL 101 101 3 101 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 102 101 3 -1 0 0 0 0 0 [ BEGL 10 ] - - - - - - S 103 27 1 104 4 0 11 59 78 -0.044 -6.863 -6.270 -6.910 [ MATP 11 ] 8 52 C G - - MP 104 103 1 108 6 2 13 59 78 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.315 -4.367 -4.310 -0.939 -2.577 -3.280 3.678 -4.310 -4.396 -0.798 -4.764 -2.604 -0.142 -4.559 -1.537 -3.401 ML 105 103 1 108 6 1 8 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 1 108 6 1 8 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 1 108 6 0 4 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 9 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 9 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 51 A U - - MP 110 109 6 114 6 2 12 57 76 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -3.660 -3.086 -2.074 3.372 -3.877 -4.753 0.138 -3.809 -3.757 0.879 -4.282 -0.821 -0.183 -4.002 -1.695 -2.686 ML 111 109 6 114 6 1 7 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 7 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 4 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 9 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 9 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 50 G C - - MP 116 115 6 120 6 2 10 55 74 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.414 -2.915 -4.472 0.475 -5.130 -4.636 -0.477 -4.825 -4.179 3.526 -4.539 0.042 -0.775 -4.240 -2.492 -3.364 ML 117 115 6 120 6 1 7 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 7 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 3 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 8 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 8 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 49 g c - - MP 122 121 6 126 6 2 8 53 72 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -3.199 -1.539 -3.236 2.169 -3.660 -4.078 0.562 -3.595 -3.330 2.575 -3.787 0.225 0.299 -3.331 -1.314 -2.217 ML 123 121 6 126 6 1 6 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 6 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 3 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 7 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 7 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 48 C G - - MP 128 127 6 132 4 2 6 51 70 -6.918 -8.163 -0.078 -4.617 -4.010 -3.944 -3.798 -0.164 -2.604 -4.288 3.200 -3.362 -3.819 0.078 -4.157 -1.910 1.542 -4.104 -0.274 -2.664 ML 129 127 6 132 4 1 5 50 70 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 5 50 69 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 3 48 67 -12.737 -14.007 -2.036 -0.404 IL 132 132 5 132 4 1 5 50 70 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 5 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 47 - a - - MR 134 133 6 136 3 1 4 49 68 -8.405 -0.018 -6.723 0.714 -0.973 -0.154 -0.072 D 135 133 6 136 3 0 3 47 67 -6.390 -1.568 -0.620 IR 136 136 3 136 3 1 4 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 46 - C - - MR 137 136 3 139 2 1 3 48 67 -8.421 -0.004 -1.873 1.658 -2.701 -1.260 D 138 136 3 139 2 0 2 47 66 -4.432 -0.068 IR 139 139 3 139 2 1 4 49 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 140 139 3 141 185 0 2 47 66 [ BEGL 19 ] - - - - - - S 141 140 1 142 4 0 0 28 47 -0.044 -6.863 -6.270 -6.910 [ MATP 20 ] 13 26 C G - - MP 142 141 1 146 6 2 2 28 47 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.671 -4.588 -4.340 -0.809 -3.032 -4.736 3.587 -3.854 -4.394 -0.585 -4.641 -2.536 0.470 -4.732 -0.741 -3.229 ML 143 141 1 146 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 1 146 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 1 146 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 25 a u - - MP 148 147 6 152 6 2 2 26 45 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -3.511 -2.552 -3.580 2.940 -4.010 -4.792 0.308 -3.741 -3.487 1.967 -4.020 -0.083 -0.010 -3.962 -1.627 -2.428 ML 149 147 6 152 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 6 152 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 24 C G - - MP 154 153 6 158 6 2 2 24 43 -9.130 -9.069 -0.039 -7.846 -8.125 -6.058 -3.605 -3.345 -3.591 0.372 -2.793 -4.317 3.097 -3.384 -3.571 0.699 -4.020 -0.353 1.044 -3.820 -0.458 -2.459 ML 155 153 6 158 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 23 g c - - MP 160 159 6 164 4 2 2 22 41 -6.960 -7.167 -0.106 -4.159 -2.631 -2.254 -2.716 1.960 -2.736 -2.457 1.345 -3.022 -2.839 2.177 -3.320 -0.270 0.929 -2.780 -0.588 -1.811 ML 161 159 6 164 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 163 159 6 164 4 0 0 21 40 -4.828 -4.510 -2.525 -0.420 IL 164 164 5 164 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 165 165 6 165 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - c - - - ML 166 165 6 168 3 1 1 19 37 -7.928 -0.021 -6.582 0.140 0.436 -0.754 -0.070 D 167 165 6 168 3 0 0 18 36 -6.838 -2.351 -0.330 IL 168 168 3 168 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - u - - - ML 169 168 3 171 3 1 1 17 36 -7.928 -0.021 -6.582 0.199 -0.075 -0.702 0.366 D 170 168 3 171 3 0 0 17 35 -6.838 -1.422 -0.694 IL 171 171 3 171 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - u - - - ML 172 171 3 174 3 1 1 16 35 -7.972 -0.320 -2.358 0.236 -0.538 -0.848 0.658 D 173 171 3 174 3 0 0 15 34 -6.557 -2.070 -0.413 IL 174 174 3 174 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - u - - - ML 175 174 3 177 3 1 1 15 33 -7.677 -0.025 -6.331 0.233 -0.410 -0.483 0.439 D 176 174 3 177 3 0 0 14 32 -7.770 -2.587 -0.271 IL 177 177 3 177 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - a - - - ML 178 177 3 180 3 1 1 13 32 -7.713 -0.120 -3.731 0.613 -1.197 0.459 -0.600 D 179 177 3 180 3 0 0 12 31 -7.675 -0.403 -2.067 IL 180 180 3 180 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - g - - - ML 181 180 3 183 2 1 1 1 1 * 0.000 0.079 -0.757 0.316 0.147 D 182 180 3 183 2 0 0 0 0 * 0.000 IL 183 183 3 183 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 184 183 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 185 140 1 186 3 0 0 32 51 -8.018 -0.020 -6.672 IL 186 186 2 186 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - C - - - ML 187 186 2 189 5 1 1 32 51 -7.141 -0.038 -6.956 -7.168 -8.060 -1.873 1.658 -2.701 -1.260 D 188 186 2 189 5 0 0 31 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 189 189 3 189 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 45 C G - - MP 190 189 3 194 6 2 2 31 50 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.205 -4.143 -3.950 -0.360 -2.707 -4.403 3.355 -3.488 -3.981 -0.121 -4.290 -2.111 1.204 -4.282 -0.386 -2.821 ML 191 189 3 194 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 192 189 3 194 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 193 189 3 194 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 194 194 5 194 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 195 195 6 195 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 44 A U - - MP 196 195 6 200 6 2 2 29 48 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -3.891 -2.897 -3.902 3.393 -4.290 -5.362 0.016 -3.938 -3.790 0.971 -4.343 -0.357 -0.401 -4.533 -1.924 -2.730 ML 197 195 6 200 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 198 195 6 200 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 199 195 6 200 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 200 200 5 200 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 201 201 6 201 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 30 43 C G - - MP 202 201 6 206 6 2 2 27 46 -9.130 -9.069 -0.021 -7.846 -8.125 -8.520 -4.067 -4.023 -3.848 -0.249 -2.643 -4.326 3.282 -3.411 -3.875 -0.014 -4.205 -2.012 1.188 -4.156 0.125 -2.722 ML 203 201 6 206 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 204 201 6 206 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 205 201 6 206 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 206 206 5 206 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 207 207 6 207 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 31 42 u a - - MP 208 207 6 212 4 2 2 25 44 -7.006 -2.628 -0.304 -5.627 -3.744 -3.674 -3.608 0.055 -2.543 -4.170 2.217 -3.256 -3.625 0.308 -4.007 -1.657 2.796 -3.879 -0.222 -2.496 ML 209 207 6 212 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 210 207 6 212 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 211 207 6 212 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 212 212 5 212 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 213 213 6 213 3 1 1 24 43 -1.872 -0.546 -4.573 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - C - - - ML 214 213 6 216 5 1 1 22 41 -7.141 -0.038 -6.956 -7.168 -8.060 -1.006 1.140 -1.828 0.024 D 215 213 6 216 5 0 0 21 40 -4.959 -0.803 -4.221 -2.596 -2.508 IL 216 216 3 216 5 1 1 23 41 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 33 40 c g - - MP 217 216 3 221 4 2 2 21 40 -7.006 -7.213 -0.051 -5.627 -2.139 -2.242 -1.660 0.952 -2.057 -3.124 2.048 -2.493 -2.342 1.047 -2.892 -0.645 1.462 -1.806 1.136 -1.447 ML 218 216 3 221 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 219 216 3 221 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 220 216 3 221 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 221 221 5 221 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 222 222 6 222 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - G - - - ML 223 222 6 225 3 1 1 18 36 -8.018 -0.020 -6.672 -1.696 -2.934 1.749 -2.321 D 224 222 6 225 3 0 0 17 36 -6.174 -1.687 -0.566 IL 225 225 3 225 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - C - - - ML 226 225 3 228 3 1 1 17 35 -4.122 -0.100 -6.672 -1.873 1.658 -2.701 -1.260 D 227 225 3 228 3 0 0 15 33 -6.174 -1.687 -0.566 IL 228 228 3 228 3 1 1 18 36 -1.617 -0.681 -4.317 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - g - - - ML 229 228 3 231 3 1 1 15 33 -8.018 -0.020 -6.672 -0.158 -0.569 0.442 0.100 D 230 228 3 231 3 0 0 15 33 -6.174 -1.687 -0.566 IL 231 231 3 231 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - G - - - ML 232 231 3 234 3 1 1 13 31 -8.018 -0.020 -6.672 -0.448 -2.028 1.408 -1.440 D 233 231 3 234 3 0 0 13 32 -6.174 -1.687 -0.566 IL 234 234 3 234 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - A - - - ML 235 234 3 237 2 1 1 1 1 * 0.000 1.313 -1.598 -0.495 -1.074 D 236 234 3 237 2 0 0 0 0 * 0.000 IL 237 237 3 237 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 238 237 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Flavivirus_SLIV ACC RF01415 DESC Flavivirus 3'UTR stem loop IV LENG 75 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Aug 5 15:38:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/3Dupdates/RF01415/CM NSEQ 21 EFFN 3.099243 CKSUM 589706026 STATS LOCAL MSV -8.2839 0.71895 STATS LOCAL VITERBI -9.4190 0.71895 STATS LOCAL FORWARD -3.3347 0.71895 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.59250 1.26365 1.17276 1.58743 1.38629 1.38629 1.38629 1.38629 0.09000 4.09376 2.66799 1.46634 0.26236 0.00000 * 1 3.12154 0.15351 3.69559 2.61198 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03584 4.03961 4.03961 1.46634 0.26236 1.81825 0.17711 2 2.10519 0.35767 2.97575 2.05680 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03584 4.03961 4.03961 1.46634 0.26236 1.81825 0.17711 3 0.53582 1.98739 1.99240 1.95623 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03584 4.03961 4.03961 1.46634 0.26236 0.39248 1.12510 4 0.96764 1.93940 1.30877 1.57950 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 5 1.88691 1.46627 2.14669 0.69154 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 6 3.03543 3.95482 0.10162 3.52633 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 7 2.92794 2.83896 3.45624 0.15495 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 8 3.82937 0.09634 3.68991 3.09783 8 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 9 0.17760 3.28472 2.48625 3.16881 9 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 10 2.50591 3.31598 0.17313 3.19245 10 G - - ( 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 11 1.05354 2.44706 0.76897 2.29006 11 g - - ( 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 12 2.91940 0.43713 2.69147 1.45944 12 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 13 3.56406 0.16800 3.36954 2.38687 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 14 0.52289 2.82576 1.27513 2.68036 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 15 2.52137 0.48061 1.98349 1.80997 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.07097 4.09376 2.95973 1.46634 0.26236 1.09861 0.40547 16 1.19704 1.72988 1.05237 1.76319 16 g - - < 1.38629 1.38629 1.38629 1.38629 0.07688 4.05797 2.86979 1.46634 0.26236 1.63084 0.21786 17 1.30851 1.00200 1.96404 1.50353 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03665 4.01775 4.01775 1.46634 0.26236 2.00003 0.14541 18 1.24903 1.41003 1.90865 1.13693 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03665 4.01775 4.01775 1.46634 0.26236 0.86600 0.54582 19 1.21344 1.80839 2.03171 0.89698 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.29904 4.05498 1.42240 1.46634 0.26236 1.66414 0.20992 20 1.22236 1.68792 1.72823 1.07013 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04570 3.80164 3.80164 1.46634 0.26236 2.00621 0.14444 21 0.92668 2.37122 0.99342 1.96283 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.13129 3.83343 2.28864 1.46634 0.26236 0.12720 2.12490 22 1.36766 1.97990 1.09225 1.30286 22 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03618 4.03031 4.03031 1.46634 0.26236 0.95283 0.48719 23 1.99812 1.14109 1.60461 1.06720 23 u - - > 1.38629 1.38629 1.38629 1.38629 0.03518 4.05797 4.05797 1.46634 0.26236 0.49681 0.93769 24 2.05244 2.41713 0.43166 2.01763 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 25 2.89203 1.45552 2.62510 0.44813 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 26 2.65546 3.51377 0.14749 3.29463 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 27 3.24932 0.13561 3.81941 2.71701 27 C - - , 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 28 3.09492 0.33185 2.87075 1.71220 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 29 0.22687 3.20060 2.13833 3.11484 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 30 2.97879 0.38362 2.75458 1.58903 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 31 2.78728 1.21011 2.55190 0.57569 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 32 2.36468 0.47998 2.96517 1.44532 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 33 1.81769 1.21601 1.76248 0.99541 33 u - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 34 3.03543 3.95482 0.10162 3.52633 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 35 3.24932 0.13561 3.81941 2.71701 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.10284 2.51264 4.09376 0.37045 1.17255 1.09861 0.40547 36 1.57582 1.81586 0.98823 1.35392 37 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 37 1.83644 3.11078 0.31413 2.72373 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 38 0.39607 2.74774 1.75257 2.41194 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 39 1.57446 1.87082 0.78601 1.69704 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.23166 1.66015 4.09376 0.16705 1.87180 1.09861 0.40547 40 0.64894 2.71851 1.09912 2.54769 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 41 1.94281 2.91658 0.30410 2.73652 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 42 3.34090 2.47214 3.00876 0.18532 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 43 1.92711 3.03352 0.29003 2.84653 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 44 3.24932 0.13561 3.81941 2.71701 46 C - - , 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 45 0.85122 2.16487 1.47907 1.46754 47 a - - , 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 46 1.63944 2.85472 0.38645 2.67547 48 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 47 2.53101 0.88283 2.25244 0.91212 49 c - - ) 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 48 3.39413 0.24378 3.13729 1.97064 50 C - - ) 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 49 3.37792 2.72868 2.89937 0.16781 51 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 50 3.17142 3.66412 0.09916 3.61828 52 G - - ) 1.38629 1.38629 1.38629 1.38629 0.39505 4.09376 1.17223 1.46634 0.26236 1.09861 0.40547 51 2.01976 0.58909 2.57776 1.44165 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.04832 3.74704 3.74704 1.46634 0.26236 3.02382 0.04984 52 2.32729 3.14776 0.23100 2.72181 54 G - - - 1.38629 1.38629 1.38629 1.38629 0.04832 3.74704 3.74704 1.46634 0.26236 3.02382 0.04984 53 0.80414 1.70171 2.05942 1.41623 55 a - - - 1.38629 1.38629 1.38629 1.38629 0.04832 3.74704 3.74704 1.46634 0.26236 0.10229 2.33067 54 2.11970 0.88521 2.69278 0.91725 56 c - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 55 0.70168 2.60841 1.13278 2.22138 57 a - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 56 1.43371 1.67344 1.02774 1.53173 58 g - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 57 1.15418 2.03665 1.64080 1.02056 59 u - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 58 2.42406 2.86251 0.23266 2.78243 60 G - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 59 3.24932 0.13561 3.81941 2.71701 61 C - - - 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 60 3.55538 0.16865 3.36505 2.38528 62 C - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 61 3.55099 0.16898 3.36276 2.38446 63 C - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 62 3.54772 0.16923 3.36106 2.38386 64 C - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 63 0.22766 3.19572 2.13719 3.10823 65 A - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 64 2.80217 3.57138 0.12639 3.50882 66 G - - < 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 65 3.03543 3.95482 0.10162 3.52633 67 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 66 0.67204 2.18440 2.08099 1.37839 68 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 67 3.03543 3.95482 0.10162 3.52633 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 68 3.03543 3.95482 0.10162 3.52633 70 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 69 0.10832 3.57341 3.26606 3.31210 71 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 70 3.68991 0.15132 3.41237 2.49505 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 71 3.32638 2.46986 3.00257 0.18654 73 U - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 72 2.66231 3.52414 0.14608 3.30648 74 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 73 2.66158 3.52304 0.14623 3.30521 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 74 2.65952 3.51991 0.14665 3.30165 76 G - - > 1.38629 1.38629 1.38629 1.38629 0.03392 4.09376 4.09376 1.46634 0.26236 1.09861 0.40547 75 1.81340 2.29212 2.66425 0.40617 77 U - - : 1.38629 1.38629 1.38629 1.38629 0.01710 4.07695 * 1.46634 0.26236 0.00000 * //