INFERNAL1/a [1.1.4 | Dec 2020] NAME Dicty_Class_I_RNA ACC RF01414 DESC Class I RNA from Dictyostelium STATES 187 NODES 57 CLEN 61 W 491 ALPH RNA RF no CONS yes MAP yes DATE Tue Mar 23 13:52:50 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.6/updates/RF01414/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 112 EFFN 112.000000 CKSUM 3651502884 NULL 0.000 0.000 0.000 0.000 GA 41.50 TC 42.00 NC 41.10 EFP7GF -14.3476 0.72543 ECMLC 0.59324 -6.48635 3.89859 1600000 568575 0.002111 ECMGC 0.37025 -17.11788 -1.49713 1600000 129964 0.003078 ECMLI 0.57737 -5.84391 4.62597 1600000 506393 0.002370 ECMGI 0.37935 -14.02617 0.58494 1600000 102142 0.003916 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 491 995 -11.757 -13.003 -0.003 -9.456 IL 1 1 2 1 4 1 17 493 997 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 493 997 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 161 - G - - MR 3 2 3 5 3 1 23 492 996 -13.169 -0.001 -11.486 -7.446 -9.220 1.996 -8.208 D 4 2 3 5 3 0 14 489 993 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 492 996 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 160 - U - - MR 6 5 3 8 5 1 23 491 995 -11.812 -0.001 -11.627 -11.840 -12.731 -9.603 -8.522 -10.837 1.998 D 7 5 3 8 5 0 13 488 992 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 17 491 995 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 159 G C - - MP 9 8 3 13 6 2 23 490 994 -12.800 -12.739 -0.002 -11.516 -11.795 -12.190 -10.681 -7.361 -12.780 -4.815 -12.339 -8.541 -6.661 -12.328 -8.727 3.970 -8.925 -1.972 -7.018 -9.002 -9.100 -11.764 ML 10 8 3 13 6 1 15 487 992 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 15 487 991 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 10 482 986 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 17 489 993 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 17 489 993 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 158 a u - - MP 15 14 6 19 6 2 22 488 992 -12.800 -12.739 -0.002 -11.516 -11.795 -12.190 -6.814 -5.457 -6.634 2.686 -7.751 -7.230 -1.163 -7.320 -7.070 2.242 -7.318 1.081 0.723 -3.372 -3.231 -1.525 ML 16 14 6 19 6 1 15 485 990 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 485 990 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 10 480 985 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 17 487 991 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 17 487 991 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 157 u a - - MP 21 20 6 25 6 2 20 486 990 -12.800 -12.739 -0.330 -11.516 -2.296 -12.190 -2.858 -6.842 -7.144 1.656 -3.375 -7.975 1.126 -6.686 -7.016 1.463 -7.524 -4.428 2.902 -7.324 -3.509 -5.743 ML 22 20 6 25 6 1 14 484 988 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 15 484 988 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 9 479 983 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 16 485 989 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 17 485 989 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 156 c g - - MP 27 26 6 31 6 2 20 484 988 -12.472 -12.411 -0.002 -11.188 -11.467 -11.862 -6.875 -6.593 -1.780 -2.438 -5.737 -7.693 2.747 0.355 -6.735 1.103 -7.241 -4.179 2.218 -3.852 -0.936 -5.463 ML 28 26 6 31 6 1 14 482 986 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 18 483 987 -11.959 -10.688 -0.031 -10.667 -5.800 -8.880 -4.888 -3.368 1.944 -5.532 D 30 26 6 31 6 0 9 478 982 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 15 483 987 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 16 483 987 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 155 u a - - MP 33 32 6 37 6 2 19 482 986 -12.800 -12.739 -0.010 -11.516 -7.305 -12.190 -6.110 -3.522 -6.221 0.703 0.364 -7.070 1.844 -3.333 -1.862 -1.023 -6.733 -2.398 2.669 -6.381 0.931 -5.133 ML 34 32 6 37 6 1 13 480 985 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 12 480 984 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 9 477 981 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 15 481 986 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 15 481 985 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 154 c g - - MP 39 38 6 43 4 2 17 480 984 -11.951 -12.158 -0.002 -10.572 -2.696 -9.978 -3.405 -6.185 -2.912 -9.228 2.894 -8.341 -9.165 -6.138 -9.296 -8.311 0.450 -9.575 2.760 -7.964 ML 40 38 6 43 4 1 12 479 983 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 11 478 983 -5.838 -4.867 -0.599 -1.795 -0.451 -1.450 1.230 -0.846 D 42 38 6 43 4 0 8 476 981 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 14 480 984 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 13 479 984 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - C - - - ML 45 44 6 47 3 1 15 478 982 -12.872 -0.001 -11.526 -1.877 1.809 -4.339 -2.520 D 46 44 6 47 3 0 8 475 980 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 478 983 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - U - - - ML 48 47 3 50 3 1 14 477 981 -12.872 -0.008 -7.624 -3.851 -4.052 -4.129 1.931 D 49 47 3 50 3 0 8 475 979 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 477 982 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 51 50 3 53 3 1 13 476 980 -12.865 -0.015 -6.660 -3.801 -0.906 -6.441 1.758 D 52 50 3 53 3 0 8 474 978 -7.384 -2.897 -0.218 IL 53 53 3 53 3 1 12 476 981 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - A - - - ML 54 53 3 56 3 1 13 475 979 -5.039 -0.045 -11.506 1.677 -2.538 -0.769 -4.556 D 55 53 3 56 3 0 8 474 978 -8.482 -0.216 -2.874 IL 56 56 3 56 3 1 10 475 979 -3.065 -0.214 -5.765 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - C - - - ML 57 56 3 59 3 1 12 474 978 -12.872 -0.001 -11.526 -7.836 1.982 -8.216 -4.533 D 58 56 3 59 3 0 3 471 975 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 474 979 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 60 59 3 62 3 1 11 473 977 -12.872 -0.001 -11.526 1.858 -4.236 -6.317 -1.691 D 61 59 3 62 3 0 3 470 974 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 8 473 978 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 63 62 3 65 3 1 10 472 976 -12.872 -0.001 -11.526 -2.146 -7.941 1.901 -4.871 D 64 62 3 65 3 0 3 469 973 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 472 977 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - C - - - ML 66 65 3 68 3 1 9 471 975 -12.872 -0.001 -11.526 -8.586 1.996 -9.110 -7.499 D 67 65 3 68 3 0 2 467 972 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 471 976 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 69 68 3 71 3 1 8 470 974 -12.872 -0.001 -11.526 1.920 -7.565 -7.595 -2.284 D 70 68 3 71 3 0 1 466 970 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 470 975 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - A - - - ML 72 71 3 74 3 1 7 469 973 -12.872 -0.001 -11.526 1.982 -4.639 -7.900 -7.878 D 73 71 3 74 3 0 0 464 968 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 469 974 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 75 74 3 77 3 1 6 468 972 -12.872 -0.001 -11.526 0.203 -1.660 -6.011 1.332 D 76 74 3 77 3 0 0 462 966 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 468 972 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - c - - - ML 78 77 3 80 3 1 5 467 971 -12.872 -0.001 -11.526 -0.274 0.527 -1.719 0.514 D 79 77 3 80 3 0 0 459 963 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 4 467 971 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 81 80 3 83 3 1 4 466 970 -2.285 -0.397 -4.815 0.969 -0.766 -3.562 0.454 D 82 80 3 83 3 0 0 455 959 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 471 976 -0.223 -2.808 -10.844 0.000 0.000 0.000 0.000 [ MATL 22 ] 33 - A - - - ML 84 83 3 86 3 1 8 464 968 -12.821 -0.001 -11.475 1.725 -2.106 -6.037 -1.159 D 85 83 3 86 3 0 0 449 954 -9.602 -5.115 -0.044 IL 86 86 3 86 3 1 4 463 968 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 34 - A - - - ML 87 86 3 89 3 1 7 463 967 -12.821 -0.006 -7.916 1.395 -0.821 -1.931 -0.886 D 88 86 3 89 3 0 0 449 953 -9.602 -1.297 -0.757 IL 89 89 3 89 3 1 3 462 966 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 35 - u - - - ML 90 89 3 92 3 1 7 462 966 -12.837 -0.001 -11.491 0.248 -1.044 -1.578 0.995 D 91 89 3 92 3 0 0 434 939 -9.121 -4.634 -0.062 IL 92 92 3 92 3 1 2 461 965 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - u - - - ML 93 92 3 95 3 1 7 461 965 -12.837 -0.001 -11.491 0.004 -0.117 -1.293 0.737 D 94 92 3 95 3 0 0 432 937 -9.121 -4.634 -0.062 IL 95 95 3 95 3 1 2 460 964 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - A - - - ML 96 95 3 98 3 1 6 460 964 -12.837 -0.007 -7.826 1.492 -1.099 -2.773 -0.801 D 97 95 3 98 3 0 0 430 934 -9.121 -4.634 -0.062 IL 98 98 3 98 3 1 2 459 963 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 38 - A - - - ML 99 98 3 101 3 1 5 459 963 -12.831 -0.001 -11.485 1.028 -1.353 -2.289 0.449 D 100 98 3 101 3 0 0 428 932 -9.313 -4.826 -0.054 IL 101 101 3 101 3 1 2 458 962 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 39 - a - - - ML 102 101 3 104 3 1 4 458 962 -12.831 -0.013 -6.781 0.427 0.032 -1.663 0.398 D 103 101 3 104 3 0 0 426 930 -9.313 -4.826 -0.054 IL 104 104 3 104 3 1 2 457 961 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 40 - A - - - ML 105 104 3 107 3 1 3 457 961 -12.818 -0.008 -7.485 1.054 -2.576 -2.133 0.612 D 106 104 3 107 3 0 0 423 928 -9.656 -5.169 -0.043 IL 107 107 3 107 3 1 2 456 960 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 41 - a - - - ML 108 107 3 110 3 1 2 456 960 -12.811 -0.010 -7.246 0.503 0.247 -4.018 0.417 D 109 107 3 110 3 0 0 421 926 -9.826 -5.339 -0.038 IL 110 110 3 110 3 1 2 455 959 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 42 - c - - - ML 111 110 3 113 3 1 1 455 960 -12.802 -0.371 -2.143 0.028 0.452 -0.681 -0.016 D 112 110 3 113 3 0 0 419 924 -10.005 -5.518 -0.033 IL 113 113 3 113 3 1 2 459 964 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 43 - U - - - ML 114 113 3 116 3 1 3 460 964 -12.432 -0.023 -6.002 0.043 -2.168 -5.705 1.448 D 115 113 3 116 3 0 0 417 922 -12.384 -7.897 -0.006 IL 116 116 3 116 3 1 2 458 963 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 44 - a - - - ML 117 116 3 119 3 1 2 459 963 -12.410 -0.054 -4.775 0.667 -0.322 -1.247 0.252 D 118 116 3 119 3 0 0 417 921 -12.443 -7.956 -0.006 IL 119 119 3 119 3 1 2 458 963 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 45 - A - - - ML 120 119 3 122 3 1 1 459 963 -12.357 -0.372 -2.139 1.182 0.046 -0.907 -2.599 D 121 119 3 122 3 0 0 416 921 -12.573 -8.086 -0.006 IL 122 122 3 122 3 1 2 463 967 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 46 - A - - - ML 123 122 3 125 3 1 3 463 968 -0.071 -5.090 -5.755 1.243 -4.515 -0.343 -0.321 D 124 122 3 125 3 0 0 416 920 -2.516 -2.781 -0.557 IL 125 125 3 125 3 1 4 464 968 -0.053 -5.083 -7.298 0.000 0.000 0.000 0.000 [ MATL 36 ] 115 - U - - - ML 126 125 3 128 3 1 4 179 390 -12.067 -0.001 -10.721 -0.140 -1.072 -1.107 1.106 D 127 125 3 128 3 0 0 177 388 -13.079 -4.745 -0.055 IL 128 128 3 128 3 1 1 179 391 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 116 - c - - - ML 129 128 3 131 3 1 3 178 389 -12.104 -0.001 -10.758 0.117 0.841 -0.636 -1.055 D 130 128 3 131 3 0 0 177 388 -13.028 -0.304 -2.397 IL 131 131 3 131 3 1 1 178 390 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 117 - u - - - ML 132 131 3 134 3 1 2 177 388 -12.757 -0.001 -11.411 0.307 -1.025 -0.601 0.689 D 133 131 3 134 3 0 0 175 387 -10.652 -1.508 -0.626 IL 134 134 3 134 3 1 1 177 389 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 118 - u - - - ML 135 134 3 137 3 1 1 176 387 -12.799 -0.001 -11.453 -0.030 -0.421 -0.755 0.750 D 136 134 3 137 3 0 0 175 386 -10.057 -0.069 -4.449 IL 137 137 3 137 3 1 1 176 388 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 119 - u - - - ML 138 137 3 140 3 1 1 175 386 -12.872 -0.001 -11.526 0.365 -0.626 -1.329 0.736 D 139 137 3 140 3 0 0 172 384 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 175 387 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 120 - u - - - ML 141 140 3 143 3 1 1 174 385 -12.872 -0.001 -11.526 0.822 -1.546 -3.492 0.849 D 142 140 3 143 3 0 0 171 383 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 174 386 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 121 - a - - - ML 144 143 3 146 3 1 1 173 384 -12.872 -0.001 -11.526 0.853 -1.727 -0.792 0.394 D 145 143 3 146 3 0 0 170 382 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 173 385 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 122 - u - - - ML 147 146 3 149 3 1 1 172 383 -12.872 -0.001 -11.526 0.641 -2.031 -1.270 0.833 D 148 146 3 149 3 0 0 169 381 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 172 384 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 123 - a - - - ML 150 149 3 152 3 1 1 171 382 -12.872 -0.001 -11.526 0.337 -0.492 0.095 -0.061 D 151 149 3 152 3 0 0 168 380 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 171 383 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 124 - a - - - ML 153 152 3 155 3 1 1 170 381 -12.872 -0.001 -11.526 0.804 -0.508 -0.747 -0.066 D 154 152 3 155 3 0 0 167 379 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 170 382 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 125 - A - - - ML 156 155 3 158 3 1 1 169 380 -12.872 -0.019 -6.281 1.409 -1.951 -0.199 -2.228 D 157 155 3 158 3 0 0 166 378 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 169 381 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 126 - A - - - ML 159 158 3 161 3 1 1 168 380 -12.854 -0.001 -11.508 1.158 -1.973 0.004 -0.966 D 160 158 3 161 3 0 0 165 377 -8.336 -0.241 -2.728 IL 161 161 3 161 3 1 1 168 379 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 127 - A - - - ML 162 161 3 164 3 1 1 167 379 -3.412 -0.143 -11.526 1.488 -2.834 -0.122 -2.891 D 163 161 3 164 3 0 0 144 356 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 193 405 -0.126 -3.596 -10.568 0.000 0.000 0.000 0.000 [ MATL 49 ] 141 - A - - - ML 165 164 3 167 3 1 1 60 133 -12.872 -0.001 -11.526 1.749 -1.729 -4.280 -1.808 D 166 164 3 167 3 0 0 57 129 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 61 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 142 - A - - - ML 168 167 3 170 3 1 1 59 132 -12.872 -0.001 -11.526 1.455 0.051 -3.206 -3.135 D 169 167 3 170 3 0 0 55 127 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 60 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 143 - a - - - ML 171 170 3 173 3 1 1 58 131 -3.804 -0.113 -8.118 0.927 0.333 -5.650 -0.287 D 172 170 3 173 3 0 0 51 123 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 68 140 -0.367 -2.168 -8.784 0.000 0.000 0.000 0.000 [ MATL 52 ] 150 - c - - - ML 174 173 3 176 3 1 1 13 31 -12.868 -0.001 -11.522 0.561 0.979 -3.928 -1.037 D 175 173 3 176 3 0 0 15 33 -7.104 -0.648 -1.496 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 151 - c - - - ML 177 176 3 179 3 1 1 11 30 -12.872 -0.001 -11.526 0.332 0.922 -5.880 -0.271 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 152 - U - - - ML 180 179 3 182 3 1 1 10 28 -12.872 -0.001 -11.526 -1.662 -0.386 -3.122 1.487 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 153 - u - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.154 -0.041 -1.659 0.677 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Dicty_Class_I_RNA ACC RF01414 DESC Class I RNA from Dictyostelium LENG 61 MAXL 510 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Mar 23 13:52:50 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 112 EFFN 92.445801 CKSUM 3651502884 STATS LOCAL MSV -8.6980 0.72543 STATS LOCAL VITERBI -8.9985 0.72543 STATS LOCAL FORWARD -2.7501 0.72543 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.10804 1.51392 1.71824 1.30798 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 0.00000 * 1 5.69557 6.82995 0.00550 6.86989 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 2 0.91403 3.48572 0.84144 1.98503 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 3 1.58176 1.91983 1.73428 0.75241 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.24110 7.04054 1.54478 1.46634 0.26236 1.09861 0.40547 4 3.39016 0.69857 1.96615 1.11167 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.00223 6.80167 6.80167 1.46634 0.26236 0.00817 4.81078 5 2.19915 1.16829 2.75003 0.66499 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.00810 7.04054 4.93522 1.46634 0.26236 1.09861 0.40547 6 4.07104 0.74911 6.26427 0.67679 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.00176 7.03420 7.03420 1.46634 0.26236 0.21802 1.63019 7 2.68917 0.13381 4.36739 3.10952 7 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 8 4.01048 4.13465 4.21791 0.05010 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00649 7.04054 5.18617 1.46634 0.26236 1.09861 0.40547 9 3.97787 2.01757 5.66900 0.16860 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01134 7.03581 4.56599 1.46634 0.26236 2.12676 0.12695 10 0.22488 3.13533 1.92116 4.46831 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03249 3.47135 7.02624 0.05622 2.90646 0.10995 2.26218 11 6.61698 0.01356 6.87857 4.50028 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 12 0.10002 4.26821 5.57643 2.55893 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 13 2.87568 6.65801 0.06882 4.72799 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 14 7.10213 0.00311 7.45289 6.37383 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 15 0.05555 6.37644 6.41295 2.98198 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 16 0.01264 4.60873 6.65835 6.63873 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 17 1.25097 2.52809 5.30759 0.46361 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 18 1.57118 1.02577 2.56073 1.03161 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 19 0.71864 1.91259 3.76257 1.07393 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.27611 1.58318 3.32570 1.97479 0.14942 1.09861 0.40547 20 0.19238 2.83822 5.38097 2.19036 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00182 7.00484 7.00484 1.46634 0.26236 3.76240 0.02350 21 0.42334 1.95391 2.70748 1.98983 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00561 7.00484 5.36368 1.46634 0.26236 0.88938 0.52918 22 1.21429 2.10055 2.46186 0.70236 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00180 7.01614 7.01614 1.46634 0.26236 3.41846 0.03331 23 1.38012 1.46907 2.27023 0.87942 36 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00180 7.01614 7.01614 1.46634 0.26236 3.41846 0.03331 24 0.35497 2.14575 3.27862 1.93692 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00586 7.01614 5.30926 1.46634 0.26236 3.41846 0.03331 25 0.67902 2.31055 2.93604 1.07704 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00180 7.01208 7.01208 1.46634 0.26236 3.55632 0.02896 26 1.09186 1.36763 2.51821 1.11141 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01057 7.01208 4.64423 1.46634 0.26236 3.55632 0.02896 27 0.66036 3.12556 2.83576 0.96562 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00706 7.00333 5.09589 1.46634 0.26236 3.80017 0.02262 28 1.04124 1.21640 4.05557 1.09853 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00807 6.99810 4.94395 1.46634 0.26236 3.92087 0.02002 29 1.36406 1.07926 1.85624 1.39322 42 c - - _ 1.38629 1.38629 1.38629 1.38629 0.25775 6.99187 1.48592 1.46634 0.26236 4.04733 0.01762 30 1.36417 2.87013 5.11153 0.38318 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01761 6.73650 4.11845 1.46634 0.26236 5.71174 0.00331 31 0.92854 1.60982 2.23479 1.21088 44 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03908 6.72130 3.29349 1.46634 0.26236 5.75291 0.00318 32 0.56936 1.36182 2.01391 3.11336 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.25883 6.68472 1.48371 1.46634 0.26236 1.31090 0.31413 33 0.53026 4.25810 1.62639 1.60564 46 A - - _ 1.38629 1.38629 1.38629 1.38629 3.04550 0.08386 3.41528 3.36889 0.03503 1.73693 0.19366 34 1.47623 2.11471 2.14061 0.62876 115 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15811 6.63926 1.93148 1.46634 0.26236 3.04798 0.04862 35 1.30419 0.81472 1.82627 2.08081 116 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00298 6.50992 6.50992 1.46634 0.26236 0.20905 1.66788 36 1.17364 2.08766 1.80035 0.91244 117 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00190 6.96104 6.96104 1.46634 0.26236 1.04178 0.43514 37 1.40341 1.67767 1.90539 0.87067 118 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00184 6.98987 6.98987 1.46634 0.26236 0.03424 3.39152 38 1.13391 1.81722 2.29414 0.87971 119 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 39 0.82023 2.44254 3.72031 0.80184 120 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 40 0.79933 2.56058 1.93094 1.11445 121 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 41 0.94522 2.76249 2.25454 0.81339 122 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 42 1.15336 1.72644 1.32513 1.42404 123 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 43 0.83373 1.73722 1.89997 1.42715 124 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 44 0.41121 2.72783 1.52781 2.90445 125 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01433 7.04054 4.31574 1.46634 0.26236 1.09861 0.40547 45 0.58850 2.73070 1.38742 2.04062 126 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00178 7.02798 7.02798 1.46634 0.26236 0.12321 2.15486 46 0.35549 3.33175 1.47470 3.36409 127 A - - _ 1.38629 1.38629 1.38629 1.38629 0.10011 2.36036 7.04054 2.56122 0.08035 1.09861 0.40547 47 0.17567 2.58103 4.29954 2.63339 141 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 48 0.37776 1.35731 3.58543 3.52240 142 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 49 0.74731 1.15697 5.05832 1.58198 143 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07930 2.62955 5.49004 1.57025 0.23319 1.09861 0.40547 50 1.00085 0.71126 4.04297 2.08858 150 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00176 7.03728 7.03728 1.46634 0.26236 0.35367 1.21102 51 1.16022 0.74849 5.24175 1.56919 151 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 52 2.52917 1.65514 3.52762 0.35691 152 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 53 1.27845 1.41710 2.51632 0.92040 153 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 54 2.25506 6.04757 0.11711 5.71844 154 G - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 55 0.71403 3.18783 1.06577 2.08256 155 a - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 56 1.44585 2.14840 0.56579 2.52737 156 G - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 57 0.73794 1.75193 1.91715 1.60228 157 a - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 58 2.25986 1.17995 3.28286 0.59635 158 U - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 59 6.95630 0.02118 6.78220 3.97033 159 C - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 60 7.76309 7.05813 8.57936 0.00147 160 U - - : 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 61 6.36826 7.59690 0.00323 6.89638 161 G - - : 1.38629 1.38629 1.38629 1.38629 0.00088 7.03966 * 1.46634 0.26236 0.00000 * //