INFERNAL1/a [1.1.5 | Sep 2023] NAME Dicty_Class_I_RNA ACC RF01414 DESC Class I RNA from Dictyostelium STATES 172 NODES 52 CLEN 56 W 211 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 02:27:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01414/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 112 EFFN 112.000000 CKSUM 3651502884 NULL 0.000 0.000 0.000 0.000 GA 41.50 TC 41.50 NC 41.40 EFP7GF -14.6231 0.72739 ECMLC 0.64282 -5.74265 3.85988 1600000 575370 0.002086 ECMGC 0.35698 -17.95376 -1.72033 1600000 131473 0.003042 ECMLI 0.58421 -5.86222 4.51495 1600000 515290 0.002329 ECMGI 0.36812 -15.16421 0.08468 1600000 109626 0.003649 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 211 392 -11.757 -13.003 -0.003 -9.456 IL 1 1 2 1 4 1 17 212 393 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 213 393 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 161 - G - - MR 3 2 3 5 3 1 24 211 392 -13.169 -0.001 -11.486 -7.446 -9.220 1.996 -8.208 D 4 2 3 5 3 0 14 209 390 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 212 392 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 160 - U - - MR 6 5 3 8 5 1 23 210 391 -11.812 -0.001 -11.627 -11.840 -12.731 -9.603 -8.522 -10.837 1.998 D 7 5 3 8 5 0 13 208 389 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 17 210 391 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 159 G C - - MP 9 8 3 13 6 2 23 209 390 -12.800 -12.739 -0.002 -11.516 -11.795 -12.190 -10.663 -7.362 -12.696 -4.808 -12.330 -8.548 -6.660 -12.271 -8.726 3.948 -8.926 -1.029 -7.015 -9.006 -9.096 -11.654 ML 10 8 3 13 6 1 15 207 388 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 15 207 388 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 10 202 383 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 16 208 389 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 17 208 389 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 158 a u - - MP 15 14 6 19 6 2 22 207 388 -12.800 -12.739 -0.002 -11.516 -11.795 -12.190 -6.257 -5.769 -6.294 2.993 -6.054 -7.064 -0.133 -6.430 -6.394 0.700 -6.864 0.419 1.616 -2.436 -2.211 -0.738 ML 16 14 6 19 6 1 15 205 386 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 205 386 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 10 200 381 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 16 207 387 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 16 206 387 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 157 U A - - MP 21 20 6 25 6 2 20 205 386 -12.800 -12.739 -0.211 -11.516 -2.888 -12.190 -3.047 -7.821 -7.935 2.075 -2.605 -8.592 -0.066 -7.398 -7.844 -0.832 -8.268 -5.453 3.303 -8.204 -4.216 -6.589 ML 22 20 6 25 6 1 14 203 384 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 15 204 384 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 9 199 380 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 16 205 385 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 16 205 385 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 156 c g - - MP 27 26 6 31 6 2 19 204 384 -12.591 -12.530 -0.002 -11.307 -11.587 -11.982 -6.937 -6.659 -0.968 -2.514 -5.823 -7.768 2.684 -1.627 -6.805 1.786 -7.315 -4.253 2.016 -3.097 -0.275 -5.538 ML 28 26 6 31 6 1 14 202 382 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 17 203 383 -11.389 -10.118 -0.047 -10.096 -5.230 -8.310 -3.732 -2.193 1.870 -4.313 D 30 26 6 31 6 0 9 198 378 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 15 203 383 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 16 203 383 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 155 u a - - MP 33 32 6 37 6 2 18 202 382 -12.800 -12.739 -0.019 -11.516 -6.329 -12.190 -4.714 -2.528 -4.896 1.511 0.057 -5.747 1.495 -2.512 -1.122 -0.273 -5.512 -1.699 2.422 -5.041 0.836 -4.094 ML 34 32 6 37 6 1 13 200 381 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 13 200 380 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 9 197 378 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 15 201 382 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 15 201 381 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 154 C G - - MP 39 38 6 43 4 2 16 200 380 -11.941 -12.148 -0.002 -10.562 -1.684 -9.960 -2.567 -6.164 -1.935 -9.217 3.495 -8.329 -9.152 -6.115 -9.284 -8.287 -0.073 -9.561 1.579 -7.950 ML 40 38 6 43 4 1 12 199 379 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 12 198 379 -6.438 -5.467 -0.366 -2.395 -1.165 -2.315 1.607 -1.700 D 42 38 6 43 4 0 8 196 377 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 14 199 380 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 13 199 380 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - C - - - ML 45 44 6 47 3 1 14 198 378 -12.872 -0.001 -11.526 -1.317 1.698 -3.419 -1.945 D 46 44 6 47 3 0 8 195 376 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 198 379 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - U - - - ML 48 47 3 50 3 1 13 197 377 -12.872 -0.014 -6.664 -3.372 -3.339 -3.515 1.894 D 49 47 3 50 3 0 8 194 375 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 197 378 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - U - - - ML 51 50 3 53 3 1 13 196 376 -12.858 -0.029 -5.669 -3.657 -1.863 -6.436 1.862 D 52 50 3 53 3 0 8 194 374 -8.039 -3.552 -0.135 IL 53 53 3 53 3 1 12 196 377 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - A - - - ML 54 53 3 56 3 1 13 195 375 -4.915 -0.049 -11.484 1.706 -1.653 -1.515 -3.849 D 55 53 3 56 3 0 8 193 374 -9.336 -0.116 -3.728 IL 56 56 3 56 3 1 10 195 375 -3.135 -0.203 -5.836 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - C - - - ML 57 56 3 59 3 1 12 194 374 -12.872 -0.001 -11.526 -7.767 1.968 -8.143 -3.641 D 58 56 3 59 3 0 4 191 372 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 194 375 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 60 59 3 62 3 1 11 193 373 -12.872 -0.001 -11.526 1.734 -3.422 -6.140 -0.820 D 61 59 3 62 3 0 3 190 371 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 8 193 374 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 63 62 3 65 3 1 10 192 372 -12.872 -0.001 -11.526 -1.231 -6.962 1.810 -4.092 D 64 62 3 65 3 0 3 189 370 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 192 373 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - C - - - ML 66 65 3 68 3 1 9 191 371 -12.872 -0.001 -11.526 -8.586 1.996 -9.110 -7.499 D 67 65 3 68 3 0 3 188 368 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 191 372 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 69 68 3 71 3 1 8 190 370 -12.872 -0.001 -11.526 1.960 -8.104 -7.853 -3.305 D 70 68 3 71 3 0 2 187 367 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 190 371 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - A - - - ML 72 71 3 74 3 1 7 189 369 -12.872 -0.001 -11.526 1.974 -3.991 -7.801 -7.717 D 73 71 3 74 3 0 1 185 366 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 189 370 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 75 74 3 77 3 1 6 188 368 -12.872 -0.001 -11.526 -0.012 -1.665 -6.138 1.421 D 76 74 3 77 3 0 1 184 365 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 188 369 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - u - - - ML 78 77 3 80 3 1 5 187 367 -12.872 -0.001 -11.526 -1.527 0.573 -1.872 0.920 D 79 77 3 80 3 0 0 183 363 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 4 187 368 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 81 80 3 83 3 1 4 186 366 -4.326 -0.181 -3.881 0.950 0.027 -2.980 -0.117 D 82 80 3 83 3 0 0 181 362 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 7 190 370 -0.396 -2.080 -8.237 0.000 0.000 0.000 0.000 [ MATL 22 ] 33 - A - - - ML 84 83 3 86 3 1 7 185 365 -12.771 -0.001 -11.425 1.461 -1.287 -5.774 -0.286 D 85 83 3 86 3 0 0 178 359 -10.478 -5.991 -0.024 IL 86 86 3 86 3 1 4 185 366 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 34 - A - - - ML 87 86 3 89 3 1 6 184 364 -12.771 -0.012 -6.921 1.361 -1.490 -3.012 -0.072 D 88 86 3 89 3 0 0 178 359 -10.478 -1.260 -0.782 IL 89 89 3 89 3 1 4 184 364 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 35 - a - - - ML 90 89 3 92 3 1 7 183 363 -12.804 -0.001 -11.458 0.847 -0.612 -2.608 0.467 D 91 89 3 92 3 0 0 172 353 -9.967 -5.480 -0.034 IL 92 92 3 92 3 1 3 183 363 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - c - - - ML 93 92 3 95 3 1 6 182 362 -12.804 -0.001 -11.458 0.278 0.629 -1.743 -0.085 D 94 92 3 95 3 0 0 172 352 -9.967 -5.480 -0.034 IL 95 95 3 95 3 1 3 182 362 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - A - - - ML 96 95 3 98 3 1 5 181 361 -12.804 -0.013 -6.842 1.268 -0.371 -1.901 -0.860 D 97 95 3 98 3 0 0 171 352 -9.967 -5.480 -0.034 IL 98 98 3 98 3 1 3 181 362 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 38 - a - - - ML 99 98 3 101 3 1 5 180 360 -12.792 -0.001 -11.446 0.963 -0.713 -1.460 0.107 D 100 98 3 101 3 0 0 171 352 -10.180 -5.693 -0.029 IL 101 101 3 101 3 1 3 180 361 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 39 - u - - - ML 102 101 3 104 3 1 4 179 359 -12.792 -0.027 -5.761 0.281 -0.804 -1.718 0.932 D 103 101 3 104 3 0 0 171 351 -10.180 -5.693 -0.029 IL 104 104 3 104 3 1 3 179 360 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 40 - U - - - ML 105 104 3 107 3 1 3 178 359 -12.765 -0.017 -6.470 0.607 -1.846 -2.522 1.018 D 106 104 3 107 3 0 0 171 351 -10.554 -6.067 -0.023 IL 107 107 3 107 3 1 3 178 359 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 41 - u - - - ML 108 107 3 110 3 1 2 177 358 -12.750 -0.020 -6.216 -0.330 0.494 -3.631 0.779 D 109 107 3 110 3 0 0 170 351 -10.737 -6.250 -0.020 IL 110 110 3 110 3 1 2 177 358 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 42 - u - - - ML 111 110 3 113 3 1 1 176 357 -12.731 -0.797 -1.237 -0.203 0.478 -2.620 0.656 D 112 110 3 113 3 0 0 170 351 -10.927 -6.440 -0.017 IL 113 113 3 113 3 1 3 179 359 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 43 - U - - - ML 114 113 3 116 3 1 6 177 358 -0.104 -3.854 -10.589 -1.080 -1.435 -5.395 1.648 D 115 113 3 116 3 0 0 170 351 -1.022 -2.457 -1.620 IL 116 116 3 116 3 1 6 177 358 -0.147 -3.369 -13.182 0.000 0.000 0.000 0.000 [ MATL 33 ] 117 - a - - - ML 117 116 3 119 3 1 3 105 243 -12.631 -0.001 -11.285 0.493 -0.161 -0.921 0.227 D 118 116 3 119 3 0 0 104 241 -11.628 -1.504 -0.628 IL 119 119 3 119 3 1 1 106 243 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 118 - u - - - ML 120 119 3 122 3 1 2 104 242 -12.721 -0.001 -11.375 0.198 -0.628 -1.666 0.919 D 121 119 3 122 3 0 0 103 241 -11.016 -0.035 -5.408 IL 122 122 3 122 3 1 1 105 242 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 119 - u - - - ML 123 122 3 125 3 1 2 103 241 -12.872 -0.001 -11.526 0.267 -0.185 -1.419 0.626 D 124 122 3 125 3 0 0 101 238 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 104 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 120 - u - - - ML 126 125 3 128 3 1 2 102 240 -12.872 -0.001 -11.526 0.548 -0.710 -2.810 0.835 D 127 125 3 128 3 0 0 100 237 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 103 240 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 121 - u - - - ML 129 128 3 131 3 1 1 101 239 -12.872 -0.001 -11.526 0.549 -0.916 -1.358 0.693 D 130 128 3 131 3 0 0 99 236 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 102 239 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 122 - A - - - ML 132 131 3 134 3 1 1 100 238 -12.872 -0.001 -11.526 1.025 -1.421 -1.359 0.265 D 133 131 3 134 3 0 0 98 235 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 101 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 123 - a - - - ML 135 134 3 137 3 1 1 99 237 -12.872 -0.001 -11.526 0.888 -0.307 -0.510 -0.646 D 136 134 3 137 3 0 0 97 234 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 100 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 124 - a - - - ML 138 137 3 140 3 1 1 98 236 -12.872 -0.001 -11.526 0.769 -0.679 -0.466 -0.077 D 139 137 3 140 3 0 0 96 234 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 99 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 125 - A - - - ML 141 140 3 143 3 1 1 97 235 -12.872 -0.037 -5.325 1.212 -1.578 -0.080 -1.310 D 142 140 3 143 3 0 0 96 233 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 98 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 126 - A - - - ML 144 143 3 146 3 1 1 96 234 -12.836 -0.001 -11.490 1.346 -2.627 -0.462 -0.811 D 145 143 3 146 3 0 0 96 233 -9.143 -0.133 -3.535 IL 146 146 3 146 3 1 1 97 234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 127 - A - - - ML 147 146 3 149 3 1 1 95 233 -6.429 -0.017 -11.526 1.572 -2.047 -0.842 -2.140 D 148 146 3 149 3 0 0 96 233 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 128 265 -0.194 -3.051 -7.652 0.000 0.000 0.000 0.000 [ MATL 44 ] 141 - A - - - ML 150 149 3 152 3 1 1 45 99 -12.872 -0.001 -11.526 1.694 -0.921 -3.511 -2.744 D 151 149 3 152 3 0 0 43 97 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 46 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 142 - A - - - ML 153 152 3 155 3 1 1 44 98 -12.872 -0.001 -11.526 1.286 0.273 -2.809 -2.252 D 154 152 3 155 3 0 0 41 96 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 45 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 143 - c - - - ML 156 155 3 158 3 1 1 43 97 -4.854 -0.061 -7.237 0.805 0.851 -5.993 -1.206 D 157 155 3 158 3 0 0 39 94 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 52 106 -0.489 -1.826 -7.541 0.000 0.000 0.000 0.000 [ MATL 47 ] 150 - C - - - ML 159 158 3 161 3 1 1 13 31 -12.863 -0.001 -11.517 -0.205 1.167 -3.956 -0.282 D 160 158 3 161 3 0 0 15 33 -7.632 -0.417 -2.023 IL 161 161 3 161 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 151 - C - - - ML 162 161 3 164 3 1 1 11 30 -12.872 -0.001 -11.526 -0.284 1.069 -5.976 0.092 D 163 161 3 164 3 0 0 15 33 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 152 - U - - - ML 165 164 3 167 3 1 1 10 28 -12.872 -0.001 -11.526 -1.743 0.052 -2.684 1.327 D 166 164 3 167 3 0 0 13 32 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 153 - u - - - ML 168 167 3 170 2 1 1 1 1 * 0.000 -0.095 0.443 -1.696 0.481 D 169 167 3 170 2 0 0 0 0 * 0.000 IL 170 170 3 170 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 171 170 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Dicty_Class_I_RNA ACC RF01414 DESC Class I RNA from Dictyostelium LENG 56 MAXL 228 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 02:27:26 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01414/CM NSEQ 112 EFFN 87.435059 CKSUM 3651502884 STATS LOCAL MSV -8.3743 0.72739 STATS LOCAL VITERBI -8.7726 0.72739 STATS LOCAL FORWARD -2.8034 0.72739 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.10212 1.46021 1.87020 1.26743 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 0.00000 * 1 5.63857 6.77804 0.00581 6.81447 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 2 0.71059 2.74656 1.65846 1.37016 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 3 1.31349 2.57719 3.21693 0.48604 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.15479 7.04054 1.94820 1.46634 0.26236 1.09861 0.40547 4 3.05592 0.86591 1.51853 1.16086 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.00204 6.88779 6.88779 1.46634 0.26236 0.01221 4.41140 5 1.63535 1.37485 2.24294 0.80723 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.01445 7.04054 4.30693 1.46634 0.26236 1.09861 0.40547 6 3.45592 0.32946 6.16933 1.39822 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.00178 7.02786 7.02786 1.46634 0.26236 0.12219 2.16265 7 2.29863 0.21259 3.73530 2.69935 7 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 8 3.68464 3.65756 3.80142 0.07606 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01123 7.04054 4.57652 1.46634 0.26236 1.09861 0.40547 9 3.87226 2.67258 5.61401 0.09820 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02108 7.03108 3.91340 1.46634 0.26236 2.62118 0.07550 10 0.20567 2.52903 2.43578 3.98278 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03715 3.33637 7.01180 0.04993 3.02203 0.05825 2.87203 11 6.50835 0.02324 6.76733 3.89559 12 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 12 0.18628 3.71393 5.39764 1.95861 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 13 2.24118 5.91873 0.13286 4.17374 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 14 7.03447 0.00332 7.38195 6.31320 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 15 0.02791 6.69544 6.55224 3.69456 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 16 0.01875 4.16566 6.51737 6.45206 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 17 1.40208 2.53060 5.34281 0.40119 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 18 2.41855 0.99221 2.67037 0.75297 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 19 0.73350 1.37082 3.37555 1.46241 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.12712 2.96228 2.69315 1.55084 0.23835 1.09861 0.40547 20 0.37554 2.27461 5.10267 1.58883 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00188 6.97141 6.97141 1.46634 0.26236 4.37293 0.01269 21 0.44780 2.40464 3.40895 1.43719 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00972 6.97141 4.74094 1.46634 0.26236 0.86767 0.54461 22 0.80482 1.80673 3.12692 1.06483 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00184 6.99367 6.99367 1.46634 0.26236 4.01259 0.01825 23 1.19516 0.95852 2.56944 1.43841 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00184 6.99367 6.99367 1.46634 0.26236 4.01259 0.01825 24 0.51375 1.64559 2.67799 1.96502 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01015 6.99367 4.69068 1.46634 0.26236 4.01259 0.01825 25 0.72590 1.87548 2.37662 1.30945 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00185 6.98537 6.98537 1.46634 0.26236 4.16346 0.01568 26 1.19194 1.93578 2.54716 0.74707 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01991 6.98537 3.97441 1.46634 0.26236 4.16346 0.01568 27 0.97031 2.63253 3.07467 0.68730 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01275 6.96734 4.44588 1.46634 0.26236 4.42605 0.01203 28 1.61250 1.04600 3.80760 0.85081 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01494 6.95650 4.27747 1.46634 0.26236 4.55438 0.01058 29 1.52315 1.05924 3.14857 0.93562 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.18637 6.94349 1.77745 1.46634 0.26236 2.50425 0.08527 30 2.13909 2.37421 4.87420 0.24653 43 U - - _ 1.38629 1.38629 1.38629 1.38629 2.16527 0.12315 6.76854 2.39229 0.09587 1.02360 0.44519 31 1.04761 1.50109 2.01520 1.22743 117 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00207 6.87506 6.87506 1.46634 0.26236 1.04085 0.43565 32 1.24804 1.81718 2.51222 0.75638 118 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00194 6.93673 6.93673 1.46634 0.26236 0.01745 4.05699 33 1.20145 1.51677 2.35033 0.95585 119 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 34 1.01004 1.87276 3.25905 0.81267 120 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 35 1.00881 2.01223 2.30907 0.91055 121 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 36 0.68281 2.35113 2.31081 1.20276 122 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 37 0.77724 1.60023 1.73920 1.81514 123 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 38 0.85905 1.85242 1.70876 1.43343 124 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 39 0.55212 2.46269 1.44653 2.26644 125 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02651 7.04054 3.67761 1.46634 0.26236 1.09861 0.40547 40 0.45873 3.15691 1.70851 1.93641 126 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00180 7.01583 7.01583 1.46634 0.26236 0.06697 2.73676 41 0.29911 2.79121 1.97275 2.84562 127 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01310 4.41113 7.04054 2.53479 0.08260 1.09861 0.40547 42 0.21409 2.02825 3.78284 3.25970 141 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 43 0.49570 1.20495 3.30354 2.91154 142 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 44 0.83194 0.80050 5.25852 2.20284 143 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04277 3.35950 4.94572 1.37974 0.28988 1.09861 0.40547 45 1.53106 0.58123 4.05279 1.57452 150 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00176 7.03428 7.03428 1.46634 0.26236 0.22009 1.62176 46 1.58643 0.64767 5.26370 1.32087 151 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 47 2.57367 1.35223 3.22271 0.46963 152 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 48 1.44830 1.08535 2.53854 1.05480 153 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 49 2.33523 5.97133 0.10857 5.64139 154 G - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 50 0.85990 2.64200 1.23359 1.54023 155 a - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 51 1.49469 1.61119 0.61767 3.30136 156 G - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 52 0.46613 3.26489 2.65522 1.33148 157 A - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 53 1.63811 2.12297 2.55287 0.49738 158 U - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 54 6.90180 0.03636 6.72916 3.39594 159 C - - > 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 55 7.67976 6.98840 8.48470 0.00159 160 U - - : 1.38629 1.38629 1.38629 1.38629 0.00175 7.04054 7.04054 1.46634 0.26236 1.09861 0.40547 56 6.31651 7.54485 0.00341 6.84462 161 G - - : 1.38629 1.38629 1.38629 1.38629 0.00088 7.03966 * 1.46634 0.26236 0.00000 * //