INFERNAL1/a [1.1.5 | Sep 2023] NAME STnc290 ACC RF01403 DESC STnc290 Hfq binding RNA STATES 204 NODES 53 CLEN 65 W 81 ALPH RNA RF no CONS yes MAP yes DATE Thu Jul 4 07:00:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/ca/40c3601b183e080b9cbfa406e9681e/RF01403/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 1.461914 CKSUM 2836673460 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 78.60 NC 44.80 EFP7GF -9.1371 0.71917 ECMLC 0.56999 -9.18664 1.71659 1600000 600102 0.002000 ECMGC 0.41795 -14.82120 -1.41904 1600000 108324 0.003693 ECMLI 0.53264 -7.16830 3.67173 1600000 386135 0.003108 ECMGI 0.43824 -10.58642 1.32700 1600000 74044 0.005402 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 81 101 -6.677 -7.922 -0.092 -4.376 IL 1 1 2 1 4 1 18 82 102 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 83 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 65 - U - - MR 3 2 3 5 3 1 17 81 101 -8.178 -0.021 -6.496 -1.144 -1.203 -1.858 1.504 D 4 2 3 5 3 0 14 79 99 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 17 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 64 - U - - MR 6 5 3 8 3 1 16 80 100 -8.178 -0.021 -6.496 -1.144 -1.203 -1.858 1.504 D 7 5 3 8 3 0 14 78 98 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 16 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 63 - U - - MR 9 8 3 11 3 1 15 79 99 -8.178 -0.021 -6.496 -1.144 -1.203 -1.858 1.504 D 10 8 3 11 3 0 13 77 97 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 16 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 62 - U - - MR 12 11 3 14 3 1 15 78 98 -8.178 -0.021 -6.496 -1.144 -1.203 -1.858 1.504 D 13 11 3 14 3 0 13 77 96 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 15 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 61 - U - - MR 15 14 3 17 2 1 14 77 97 -8.126 -0.005 -1.144 -1.203 -1.858 1.504 D 16 14 3 17 2 0 13 76 96 -4.432 -0.068 IR 17 17 3 17 2 1 14 78 98 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 126 0 13 76 96 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 50 69 -0.048 -6.733 -6.141 -6.781 [ MATP 8 ] 1 35 a u - - MP 20 19 1 24 6 2 2 50 69 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -2.797 -2.464 -0.846 2.779 -2.942 -3.816 0.897 -3.123 -2.961 1.413 -3.489 -0.409 0.606 -3.090 -0.865 -1.976 ML 21 19 1 24 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 2 34 u g - - MP 26 25 6 30 6 2 2 48 67 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.455 -3.415 -3.331 0.184 -2.337 -3.884 1.927 -3.039 -3.370 0.454 -3.748 -1.499 1.663 -3.599 2.334 -2.281 ML 27 25 6 30 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 3 33 A U - - MP 32 31 6 36 4 2 2 46 65 -6.742 -6.949 -0.061 -5.364 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 33 31 6 36 4 1 1 47 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 4 1 1 46 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 35 31 6 36 4 0 0 45 65 -4.568 -4.250 -2.265 -0.520 IL 36 36 5 36 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 37 37 6 37 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 4 - A - - - ML 38 37 6 40 3 1 1 44 63 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 39 37 6 40 3 0 0 42 61 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 5 - A - - - ML 41 40 3 43 3 1 1 42 61 -8.178 -0.021 -6.496 1.623 -1.993 -1.663 -1.501 D 42 40 3 43 3 0 0 41 60 -5.620 -0.734 -1.403 IL 43 43 3 43 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 32 - A - - MR 44 43 3 46 3 1 1 41 60 -8.178 -0.021 -6.496 1.623 -1.993 -1.663 -1.501 D 45 43 3 46 3 0 0 40 59 -6.390 -1.568 -0.620 IR 46 46 3 46 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 31 - C - - MR 47 46 3 49 3 1 1 40 59 -8.178 -0.021 -6.496 -1.292 1.477 -2.096 -0.799 D 48 46 3 49 3 0 0 39 58 -6.390 -1.568 -0.620 IR 49 49 3 49 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 30 - A - - MR 50 49 3 52 3 1 1 39 58 -8.178 -0.021 -6.496 1.623 -1.993 -1.663 -1.501 D 51 49 3 52 3 0 0 38 57 -6.390 -1.568 -0.620 IR 52 52 3 52 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 29 - G - - MR 53 52 3 55 5 1 1 38 57 -6.929 -0.044 -6.745 -6.957 -7.848 -1.176 -2.327 1.610 -1.712 D 54 52 3 55 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 55 55 3 55 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 6 28 A U - - MP 56 55 3 60 6 2 2 37 56 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 57 55 3 60 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 3 60 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 3 60 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 7 27 G C - - MP 62 61 6 66 6 2 2 35 54 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -4.375 -2.921 -4.448 0.438 -4.716 -4.545 -0.169 -4.658 -4.078 3.536 -4.443 -0.609 -0.566 -4.225 -2.188 -3.330 ML 63 61 6 66 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 8 26 A U - - MP 68 67 6 72 6 2 2 33 52 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 69 67 6 72 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 9 25 g u - - MP 74 73 6 78 6 2 2 31 50 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.384 -2.251 -3.529 1.265 -4.054 -4.790 0.292 -3.587 -3.261 1.670 -3.771 2.787 -0.069 -4.039 -1.647 -2.284 ML 75 73 6 78 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 10 24 U A - - MP 80 79 6 84 6 2 2 29 48 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.815 -3.624 -3.693 0.051 -2.720 -4.290 1.598 -3.388 -3.703 0.370 -4.094 -1.534 3.112 -3.979 -0.406 -2.561 ML 81 79 6 84 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 11 23 A U - - MP 86 85 6 90 6 2 2 27 46 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 87 85 6 90 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 12 22 C G - - MP 92 91 6 96 4 2 2 25 44 -6.742 -6.949 -0.061 -5.364 -4.174 -4.043 -3.925 -0.313 -2.732 -4.385 3.415 -3.503 -3.964 -0.011 -4.263 -1.986 0.817 -4.266 -0.432 -2.818 ML 93 91 6 96 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 96 96 5 96 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 13 - C - - - ML 98 97 6 100 3 1 1 22 41 -7.775 -0.024 -6.429 -1.292 1.477 -2.096 -0.799 D 99 97 6 100 3 0 0 21 40 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - A - - - ML 101 100 3 103 3 1 1 21 40 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 102 100 3 103 3 0 0 20 39 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 15 - A - - - ML 104 103 3 106 3 1 1 20 39 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 105 103 3 106 3 0 0 19 38 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 16 - A - - - ML 107 106 3 109 3 1 1 19 38 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 108 106 3 109 3 0 0 18 37 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 17 - A - - - ML 110 109 3 112 3 1 1 18 36 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 111 109 3 112 3 0 0 17 36 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 18 - U - - - ML 113 112 3 115 3 1 1 16 35 -7.775 -0.024 -6.429 -1.144 -1.203 -1.858 1.504 D 114 112 3 115 3 0 0 16 34 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 19 - G - - - ML 116 115 3 118 3 1 1 15 33 -7.775 -0.024 -6.429 -1.176 -2.327 1.610 -1.712 D 117 115 3 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 20 - U - - - ML 119 118 3 121 3 1 1 13 32 -7.775 -0.024 -6.429 -1.144 -1.203 -1.858 1.504 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 21 - C - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 -1.292 1.477 -2.096 -0.799 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 126 18 1 127 3 0 0 39 58 -7.775 -0.024 -6.429 IL 127 127 2 127 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - U - - - ML 128 127 2 130 3 1 1 39 58 -7.775 -0.024 -6.429 -1.144 -1.203 -1.858 1.504 D 129 127 2 130 3 0 0 38 57 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 131 130 3 133 3 1 1 38 57 -7.775 -0.024 -6.429 -1.144 -1.203 -1.858 1.504 D 132 130 3 133 3 0 0 37 56 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - A - - - ML 134 133 3 136 3 1 1 37 56 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 135 133 3 136 3 0 0 36 55 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - C - - - ML 137 136 3 139 5 1 1 36 55 -6.929 -0.044 -6.745 -6.957 -7.848 -1.292 1.477 -2.096 -0.799 D 138 136 3 139 5 0 0 35 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 139 139 3 139 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 40 60 G C - - MP 140 139 3 144 6 2 2 35 54 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -4.375 -2.921 -4.448 0.438 -4.716 -4.545 -0.169 -4.658 -4.078 3.536 -4.443 -0.609 -0.566 -4.225 -2.188 -3.330 ML 141 139 3 144 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 3 144 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 3 144 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 41 59 A U - - MP 146 145 6 150 6 2 2 33 52 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 147 145 6 150 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 42 58 A U - - MP 152 151 6 156 6 2 2 31 50 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 153 151 6 156 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 43 57 G C - - MP 158 157 6 162 6 2 2 29 48 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -4.375 -2.921 -4.448 0.438 -4.716 -4.545 -0.169 -4.658 -4.078 3.536 -4.443 -0.609 -0.566 -4.225 -2.188 -3.330 ML 159 157 6 162 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 44 56 G C - - MP 164 163 6 168 6 2 2 27 46 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -4.375 -2.921 -4.448 0.438 -4.716 -4.545 -0.169 -4.658 -4.078 3.536 -4.443 -0.609 -0.566 -4.225 -2.188 -3.330 ML 165 163 6 168 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 45 55 G C - - MP 170 169 6 174 6 2 2 25 44 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -4.375 -2.921 -4.448 0.438 -4.716 -4.545 -0.169 -4.658 -4.078 3.536 -4.443 -0.609 -0.566 -4.225 -2.188 -3.330 ML 171 169 6 174 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 46 54 A U - - MP 176 175 6 180 6 2 2 23 42 -9.032 -8.972 -0.022 -7.748 -8.028 -8.423 -3.496 -2.607 -3.533 3.097 -3.727 -4.768 0.555 -3.592 -3.440 1.399 -3.973 -0.136 0.135 -4.003 -1.388 -2.387 ML 177 175 6 180 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 47 53 G C - - MP 182 181 6 186 4 2 2 21 40 -6.742 -6.949 -0.061 -5.364 -4.375 -2.921 -4.448 0.438 -4.716 -4.545 -0.169 -4.658 -4.078 3.536 -4.443 -0.609 -0.566 -4.225 -2.188 -3.330 ML 183 181 6 186 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 188 187 6 190 3 1 1 18 36 -7.775 -0.024 -6.429 -1.144 -1.203 -1.858 1.504 D 189 187 6 190 3 0 0 17 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - A - - - ML 191 190 3 193 3 1 1 16 35 -7.775 -0.024 -6.429 1.623 -1.993 -1.663 -1.501 D 192 190 3 193 3 0 0 16 34 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - C - - - ML 194 193 3 196 3 1 1 15 33 -7.775 -0.024 -6.429 -1.292 1.477 -2.096 -0.799 D 195 193 3 196 3 0 0 15 33 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - C - - - ML 197 196 3 199 3 1 1 13 32 -7.775 -0.024 -6.429 -1.292 1.477 -2.096 -0.799 D 198 196 3 199 3 0 0 13 32 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - G - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 -1.176 -2.327 1.610 -1.712 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME STnc290 ACC RF01403 DESC STnc290 Hfq binding RNA LENG 65 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jul 4 07:00:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/work/ca/40c3601b183e080b9cbfa406e9681e/RF01403/CM NSEQ 6 EFFN 2.012695 CKSUM 2836673460 STATS LOCAL MSV -8.3482 0.71917 STATS LOCAL VITERBI -8.7237 0.71917 STATS LOCAL FORWARD -3.5639 0.71917 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30741 1.48931 1.52129 1.25344 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 0.00000 * 1 0.55163 2.21504 1.65552 2.08871 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 2 2.62357 1.44848 2.38451 0.51017 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 3 0.41634 2.57810 1.69283 2.51791 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 4 0.18556 3.07417 2.81463 2.76132 4 A - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 5 0.18556 3.07417 2.81463 2.76132 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 6 0.41712 2.57578 1.69254 2.51439 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 7 2.47949 3.06855 0.19788 3.01069 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 8 0.41667 2.57712 1.69271 2.51642 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 9 1.84787 2.72925 0.35126 2.61238 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 10 2.79132 1.77294 2.52089 0.37333 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 11 0.41678 2.57678 1.69266 2.51590 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 12 3.02847 0.28485 2.78304 1.98318 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 13 2.64631 0.24659 3.21888 2.22909 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 14 0.18556 3.07417 2.81463 2.76132 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 15 0.18556 3.07417 2.81463 2.76132 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 16 0.18556 3.07417 2.81463 2.76132 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 17 0.18556 3.07417 2.81463 2.76132 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 18 2.45655 2.44694 2.96711 0.25327 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 19 2.52838 3.38134 0.18127 2.95652 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 20 2.45655 2.44694 2.96711 0.25327 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 21 2.64631 0.24659 3.21888 2.22909 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 22 2.25855 2.95015 0.24649 2.78669 22 G - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 23 2.74486 1.96788 2.39049 0.35040 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 24 0.42408 2.70205 1.60982 2.54295 24 A - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 25 2.82871 1.77018 2.53214 0.36944 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 26 2.74835 1.96820 2.39170 0.34986 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 27 3.23000 0.23189 2.90471 2.18352 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 28 2.75260 1.96859 2.39317 0.34921 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 29 2.52838 3.38134 0.18127 2.95652 29 G - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 30 0.18556 3.07417 2.81463 2.76132 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 31 2.64631 0.24659 3.21888 2.22909 31 C - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 32 0.18556 3.07417 2.81463 2.76132 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 33 2.74284 1.96769 2.38979 0.35071 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 34 1.52386 2.54186 0.49251 2.38249 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 35 2.30743 1.84850 1.79262 0.55080 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 36 2.45655 2.44694 2.96711 0.25327 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 37 2.45655 2.44694 2.96711 0.25327 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 38 0.18556 3.07417 2.81463 2.76132 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 39 2.64631 0.24659 3.21888 2.22909 39 C - - - 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 40 2.48215 3.07146 0.19720 3.01481 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 41 0.41637 2.57801 1.69282 2.51778 41 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 42 0.41647 2.57771 1.69278 2.51732 42 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 43 2.48059 3.06976 0.19760 3.01240 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 44 2.48005 3.06917 0.19774 3.01156 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 45 2.47958 3.06865 0.19786 3.01083 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 46 0.41683 2.57665 1.69265 2.51570 46 A - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 47 2.47884 3.06784 0.19805 3.00968 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 48 2.45655 2.44694 2.96711 0.25327 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 49 0.18556 3.07417 2.81463 2.76132 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 50 2.64631 0.24659 3.21888 2.22908 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 51 2.64631 0.24659 3.21888 2.22909 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 52 2.52838 3.38134 0.18127 2.95652 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 53 3.21805 0.23316 2.89969 2.18123 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 54 2.74390 1.96779 2.39016 0.35055 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 55 3.21980 0.23298 2.90043 2.18157 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 56 3.22069 0.23288 2.90080 2.18174 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 57 3.22135 0.23281 2.90108 2.18187 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 58 2.74533 1.96792 2.39066 0.35033 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 59 2.74462 1.96786 2.39041 0.35044 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 60 3.21622 0.23336 2.89891 2.18088 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 61 2.45655 2.44694 2.96711 0.25327 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 62 2.45655 2.44694 2.96711 0.25327 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 63 2.45655 2.44694 2.96711 0.25327 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 64 2.45655 2.44694 2.96711 0.25327 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.04463 3.82468 3.82468 1.46634 0.26236 1.09861 0.40547 65 2.45655 2.44694 2.96711 0.25327 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.02256 3.80262 * 1.46634 0.26236 0.00000 * //