INFERNAL1/a [1.1.5 | Sep 2023] NAME isrD ACC RF01388 DESC isrD Hfq binding RNA STATES 162 NODES 44 CLEN 51 W 66 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 22:06:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01388/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 1826922080 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 38.00 NC 36.50 EFP7GF -5.2978 0.73219 ECMLC 0.58284 -9.04626 1.61613 1600000 599925 0.002000 ECMGC 0.43511 -15.98865 -2.60784 1600000 135074 0.002961 ECMLI 0.57653 -7.56495 2.81427 1600000 476418 0.002519 ECMGI 0.47931 -12.00737 -0.33746 1600000 107475 0.003722 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 66 86 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 15 70 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 14 66 86 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 4 2 3 5 3 0 11 65 85 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 14 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 51 - U - - MR 6 5 3 8 3 1 13 65 85 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 7 5 3 8 3 0 10 64 83 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 13 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 50 - U - - MR 9 8 3 11 3 1 12 64 84 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 10 8 3 11 3 0 9 63 82 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 12 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 49 - U - - MR 12 11 3 14 3 1 11 63 83 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 13 11 3 14 3 0 9 62 81 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 11 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 48 - U - - MR 15 14 3 17 3 1 10 62 82 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 16 14 3 17 3 0 8 61 80 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 10 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 47 - U - - MR 18 17 3 20 3 1 9 61 81 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 19 17 3 20 3 0 8 60 80 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 46 - U - - MR 21 20 3 23 2 1 8 60 80 -8.389 -0.004 -1.535 -1.523 -2.271 1.632 D 22 20 3 23 2 0 7 60 79 -4.432 -0.068 IR 23 23 3 23 2 1 9 61 81 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 24 23 3 25 102 0 7 59 79 [ BEGL 9 ] - - - - - - S 25 24 1 26 4 0 0 40 59 -0.044 -6.848 -6.255 -6.895 [ MATP 10 ] 2 26 G C - - MP 26 25 1 30 6 2 2 40 59 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 27 25 1 30 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 1 30 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 1 30 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 3 25 C G - - MP 32 31 6 36 4 2 2 38 57 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 33 31 6 36 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 35 31 6 36 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 36 36 5 36 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 37 37 6 37 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 4 - A - - - ML 38 37 6 40 3 1 1 35 54 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 39 37 6 40 3 0 0 34 53 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 5 - u - - - ML 41 40 3 43 3 1 1 34 53 -7.991 -0.020 -6.645 -0.727 0.473 -1.508 0.728 D 42 40 3 43 3 0 0 33 52 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 6 - U - - - ML 44 43 3 46 3 1 1 33 52 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 45 43 3 46 3 0 0 32 51 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 7 - U - - - ML 47 46 3 49 3 1 1 32 51 -7.991 -0.020 -6.645 -1.535 -1.523 -2.271 1.632 D 48 46 3 49 3 0 0 31 50 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 8 - A - - - ML 50 49 3 52 3 1 1 31 49 -8.380 -0.018 -6.697 1.730 -2.426 -2.052 -1.973 D 51 49 3 52 3 0 0 29 48 -5.620 -0.734 -1.403 IL 52 52 3 52 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 24 - A - - MR 53 52 3 55 3 1 1 30 48 -8.380 -0.018 -6.697 1.730 -2.426 -2.052 -1.973 D 54 52 3 55 3 0 0 28 47 -6.390 -1.568 -0.620 IR 55 55 3 55 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 23 - C - - MR 56 55 3 58 3 1 1 29 47 -8.380 -0.018 -6.697 -1.806 1.641 -2.632 -1.207 D 57 55 3 58 3 0 0 27 46 -6.390 -1.568 -0.620 IR 58 58 3 58 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 22 - U - - MR 59 58 3 61 3 1 1 28 46 -8.380 -0.018 -6.697 -1.535 -1.523 -2.271 1.632 D 60 58 3 61 3 0 0 26 45 -6.390 -1.568 -0.620 IR 61 61 3 61 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 21 - C - - MR 62 61 3 64 5 1 1 27 45 -7.117 -0.038 -6.932 -7.144 -8.036 -1.806 1.641 -2.632 -1.207 D 63 61 3 64 5 0 0 25 44 -5.352 -0.707 -2.978 -4.409 -2.404 IR 64 64 3 64 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 9 20 U A - - MP 65 64 3 69 6 2 2 26 44 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 66 64 3 69 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 3 69 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 3 69 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 10 19 U A - - MP 71 70 6 75 6 2 2 24 42 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 72 70 6 75 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 11 18 U A - - MP 77 76 6 81 6 2 2 22 40 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.256 -4.083 -4.087 -0.373 -3.015 -4.645 1.315 -3.716 -4.092 -0.129 -4.462 -1.980 3.359 -4.405 -0.690 -2.909 ML 78 76 6 81 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 12 17 C G - - MP 83 82 6 87 4 2 2 20 38 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 84 82 6 87 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 13 - A - - - ML 89 88 6 91 3 1 1 16 35 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 90 88 6 91 3 0 0 16 34 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 14 - A - - - ML 92 91 3 94 3 1 1 15 33 -7.991 -0.020 -6.645 1.730 -2.426 -2.052 -1.973 D 93 91 3 94 3 0 0 15 33 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 15 - C - - - ML 95 94 3 97 3 1 1 13 31 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 96 94 3 97 3 0 0 13 32 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 16 - A - - - ML 98 97 3 100 2 1 1 1 1 * 0.000 1.730 -2.426 -2.052 -1.973 D 99 97 3 100 2 0 0 0 0 * 0.000 IL 100 100 3 100 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 101 100 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 102 24 1 103 5 0 0 33 52 -7.117 -0.038 -6.932 -7.144 -8.036 IL 103 103 2 103 5 1 1 34 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 45 G C - - MP 104 103 2 108 6 2 2 33 52 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 105 103 2 108 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 2 108 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 2 108 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 44 G C - - MP 110 109 6 114 6 2 2 31 50 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.798 -3.121 -4.902 0.163 -5.312 -4.716 -0.662 -5.149 -4.364 3.651 -4.697 -0.822 -1.046 -4.505 -2.702 -3.778 ML 111 109 6 114 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 43 C G - - MP 116 115 6 120 6 2 2 29 48 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 117 115 6 120 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 30 42 C G - - MP 122 121 6 126 6 2 2 27 46 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 123 121 6 126 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 31 41 A U - - MP 128 127 6 132 6 2 2 25 44 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -3.842 -2.861 -3.857 3.364 -4.221 -5.288 0.082 -3.896 -3.747 1.023 -4.297 -0.328 -0.335 -4.467 -1.858 -2.688 ML 129 127 6 132 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 32 40 C G - - MP 134 133 6 138 6 2 2 23 41 -9.118 -9.058 -0.021 -7.834 -8.114 -8.509 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 135 133 6 138 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 39 C G - - MP 140 139 6 144 4 2 2 21 39 -6.977 -7.184 -0.052 -5.598 -4.612 -4.524 -4.292 -0.750 -2.996 -4.695 3.570 -3.812 -4.343 -0.519 -4.597 -2.472 0.512 -4.677 -0.704 -3.181 ML 141 139 6 144 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 143 139 6 144 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 144 144 5 144 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 145 145 6 145 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - G - - - ML 146 145 6 148 3 1 1 18 36 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 147 145 6 148 3 0 0 17 36 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - C - - - ML 149 148 3 151 3 1 1 16 35 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 150 148 3 151 3 0 0 16 34 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - G - - - ML 152 151 3 154 3 1 1 15 33 -7.991 -0.020 -6.645 -1.638 -2.867 1.736 -2.254 D 153 151 3 154 3 0 0 15 33 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - C - - - ML 155 154 3 157 3 1 1 13 31 -7.991 -0.020 -6.645 -1.806 1.641 -2.632 -1.207 D 156 154 3 157 3 0 0 13 32 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - A - - - ML 158 157 3 160 2 1 1 1 1 * 0.000 1.730 -2.426 -2.052 -1.973 D 159 157 3 160 2 0 0 0 0 * 0.000 IL 160 160 3 160 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 161 160 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME isrD ACC RF01388 DESC isrD Hfq binding RNA LENG 51 MAXL 134 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 22:06:59 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01388/CM NSEQ 2 EFFN 1.597656 CKSUM 1826922080 STATS LOCAL MSV -7.3287 0.73219 STATS LOCAL VITERBI -8.9070 0.73219 STATS LOCAL FORWARD -2.9923 0.73219 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.47402 1.32792 1.45095 1.30335 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.24990 2.27720 2.74898 0.31742 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.34222 2.83051 0.24470 2.78118 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81688 0.35696 2.53442 1.82574 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.23907 2.84674 2.61008 2.51231 4 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 1.80362 1.10176 2.33361 0.90124 5 u - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.24990 2.27720 2.74898 0.31742 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.24990 2.27720 2.74898 0.31742 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23907 2.84674 2.61008 2.51231 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.56713 1.61877 2.26840 0.47542 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.57035 1.61873 2.26952 0.47485 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57149 1.61872 2.26991 0.47465 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81138 0.35787 2.53221 1.82492 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23907 2.84674 2.61008 2.51231 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23907 2.84674 2.61008 2.51231 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.37450 0.32802 2.93676 2.01325 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23907 2.84674 2.61008 2.51231 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.09889 2.69883 0.30995 2.56868 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.54052 2.44700 1.45521 2.32633 18 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.54036 2.44745 1.45519 2.32697 19 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.54016 2.44798 1.45517 2.32772 20 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.37450 0.32802 2.93676 2.01325 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.24990 2.27720 2.74898 0.31742 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.37450 0.32802 2.93676 2.01325 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23907 2.84674 2.61008 2.51231 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.09603 2.69560 0.31118 2.56434 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.97670 0.28987 2.64911 2.04051 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.34155 2.82987 0.24491 2.78023 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.34092 2.82927 0.24510 2.77935 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81636 0.35704 2.53421 1.82566 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81498 0.35727 2.53366 1.82546 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.54163 2.33218 1.51889 2.28120 31 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81267 0.35766 2.53273 1.82511 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81176 0.35781 2.53236 1.82498 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.28616 3.09952 0.24302 2.67335 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.37450 0.32802 2.93676 2.01325 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.28616 3.09952 0.24302 2.67335 36 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.37450 0.32802 2.93676 2.01325 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 0.23907 2.84674 2.61008 2.51231 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.09849 2.69838 0.31012 2.56808 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.09893 2.69887 0.30993 2.56875 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.51396 1.76986 2.14829 0.45885 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.10014 2.70025 0.30941 2.57059 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.10099 2.70121 0.30904 2.57188 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 3.00541 0.28593 2.66031 2.04612 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 3.01018 0.28528 2.66215 2.04703 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.24990 2.27720 2.74898 0.31742 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.24990 2.27720 2.74898 0.31742 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.24990 2.27720 2.74898 0.31742 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.24990 2.27720 2.74898 0.31742 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.24990 2.27720 2.74898 0.31742 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.24990 2.27720 2.74898 0.31742 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //