INFERNAL1/a [1.1.5 | Sep 2023] NAME CRISPR-DR55 ACC RF01368 DESC CRISPR RNA direct repeat element STATES 115 NODES 39 CLEN 37 W 112 ALPH RNA RF no CONS yes MAP yes DATE Fri Jul 5 05:51:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01368/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 2.000000 CKSUM 3892420366 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 49.10 NC 39.20 EFP7GF -2.4839 0.75237 ECMLC 0.46600 -9.73770 4.00176 1600000 724045 0.001657 ECMGC 0.52734 -5.32030 6.53517 1600000 207595 0.001927 ECMLI 0.50647 -4.92552 6.38936 1600000 369785 0.003245 ECMGI 0.60640 -0.84079 8.76369 1600000 135355 0.002955 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 112 193 -6.977 -7.184 -0.052 -5.598 IL 1 1 2 1 4 1 3 114 195 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 114 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 3 112 193 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 4 2 3 5 3 0 0 109 189 -11.551 -1.585 -0.585 IL 5 5 3 5 3 1 4 119 200 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 3 111 191 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 7 5 3 8 3 0 0 107 187 -11.551 -1.585 -0.585 IL 8 8 3 8 3 1 4 118 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 2 109 190 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 10 8 3 11 3 0 0 106 186 -11.551 -1.585 -0.585 IL 11 11 3 11 3 1 4 116 197 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 2 108 188 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 13 11 3 14 3 0 0 104 184 -11.551 -1.585 -0.585 IL 14 14 3 14 3 1 3 115 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 2 106 186 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 16 14 3 17 3 0 0 103 182 -11.551 -1.585 -0.585 IL 17 17 3 17 3 1 3 113 194 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 1 105 185 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 19 17 3 20 3 0 0 101 181 -11.551 -1.585 -0.585 IL 20 20 3 20 3 1 3 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 1 103 183 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 22 20 3 23 3 0 0 100 179 -11.551 -1.585 -0.585 IL 23 23 3 23 3 1 2 110 191 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 1 102 181 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 25 23 3 26 3 0 0 99 177 -11.551 -1.585 -0.585 IL 26 26 3 26 3 1 2 109 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 1 101 179 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 28 26 3 29 3 0 0 97 176 -11.551 -1.585 -0.585 IL 29 29 3 29 3 1 2 107 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 1 99 178 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 31 29 3 32 3 0 0 95 174 -11.551 -1.585 -0.585 IL 32 32 3 32 3 1 1 106 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 1 97 176 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 34 32 3 35 3 0 0 94 172 -11.551 -1.585 -0.585 IL 35 35 3 35 3 1 1 105 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 1 96 174 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 37 35 3 38 3 0 0 92 170 -11.551 -1.585 -0.585 IL 38 38 3 38 3 1 1 103 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - C - - - ML 39 38 3 41 3 1 1 94 172 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 40 38 3 41 3 0 0 91 168 -11.551 -1.585 -0.585 IL 41 41 3 41 3 1 1 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 1 93 171 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 43 41 3 44 3 0 0 89 167 -11.551 -1.585 -0.585 IL 44 44 3 44 3 1 1 100 179 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 1 91 169 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 46 44 3 47 3 0 0 88 165 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 1 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 48 47 3 50 3 1 1 90 167 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 49 47 3 50 3 0 0 86 163 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 1 97 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 1 88 165 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 52 50 3 53 3 0 0 85 161 -11.551 -1.585 -0.585 IL 53 53 3 53 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 54 53 3 56 3 1 1 87 163 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 55 53 3 56 3 0 0 83 159 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 1 94 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 1 85 161 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 58 56 3 59 3 0 0 81 157 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 1 93 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - A - - - ML 60 59 3 62 3 1 1 83 159 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 61 59 3 62 3 0 0 80 155 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 1 91 168 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 1 82 158 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 64 62 3 65 3 0 0 78 153 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 1 89 166 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 1 80 156 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 67 65 3 68 3 0 0 76 151 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - U - - - ML 69 68 3 71 3 1 1 78 154 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 70 68 3 71 3 0 0 74 149 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - u - - - ML 72 71 3 74 3 1 1 77 151 -5.392 -0.070 -5.392 -0.913 0.540 -1.072 0.622 D 73 71 3 74 3 0 0 73 147 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - u - - - ML 75 74 3 77 3 1 1 75 149 -5.392 -0.070 -5.392 -0.913 0.540 -1.072 0.622 D 76 74 3 77 3 0 0 71 145 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 1 83 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - A - - - ML 78 77 3 80 3 1 1 73 147 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 79 77 3 80 3 0 0 69 143 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 1 81 156 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 81 80 3 83 3 1 1 71 145 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 82 80 3 83 3 0 0 67 140 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 1 80 154 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 84 83 3 86 3 1 1 69 143 -5.392 -0.070 -5.392 -1.552 1.512 -1.724 -0.989 D 85 83 3 86 3 0 0 65 138 -11.551 -1.585 -0.585 IL 86 86 3 86 3 1 1 78 152 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - u - - - ML 87 86 3 89 3 1 1 67 141 -5.392 -0.070 -5.392 -0.913 0.540 -1.072 0.622 D 88 86 3 89 3 0 0 63 135 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 1 76 150 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - A - - - ML 90 89 3 92 3 1 1 65 138 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 91 89 3 92 3 0 0 61 133 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 1 74 148 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - a - - - ML 93 92 3 95 3 1 1 63 136 -5.392 -0.070 -5.392 0.435 0.432 -0.809 -0.457 D 94 92 3 95 3 0 0 59 130 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 1 72 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - U - - - ML 96 95 3 98 3 1 1 61 133 -5.392 -0.070 -5.392 -1.340 -1.068 -1.480 1.470 D 97 95 3 98 3 0 0 56 127 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - G - - - ML 99 98 3 101 3 1 1 59 130 -5.392 -0.070 -5.392 -1.447 -2.081 1.636 -1.792 D 100 98 3 101 3 0 0 53 124 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 1 69 140 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - A - - - ML 102 101 3 104 3 1 1 56 127 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 103 101 3 104 3 0 0 50 120 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 1 67 138 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 105 104 3 107 3 1 1 53 123 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 106 104 3 107 3 0 0 45 114 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 1 64 135 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 108 107 3 110 3 1 1 49 118 -5.392 -0.070 -5.392 1.584 -1.763 -1.496 -1.505 D 109 107 3 110 3 0 0 32 101 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - u - - - ML 111 110 3 113 2 1 1 1 1 * 0.000 -0.913 0.540 -1.072 0.622 D 112 110 3 113 2 0 0 0 0 * 0.000 IL 113 113 3 113 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 114 113 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CRISPR-DR55 ACC RF01368 DESC CRISPR RNA direct repeat element LENG 37 MAXL 112 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Fri Jul 5 05:51:09 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01368/CM NSEQ 2 EFFN 2.000000 CKSUM 3892420366 STATS LOCAL MSV -7.3508 0.75237 STATS LOCAL VITERBI -8.7125 0.75237 STATS LOCAL FORWARD -2.1318 0.75237 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.99498 1.35397 2.06438 1.40586 1.38629 1.38629 1.38629 1.38629 0.02964 4.83577 3.85060 0.39730 1.11515 0.00000 * 1 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.46232 0.33808 2.58153 2.07174 - C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 1.08498 1.08670 1.94700 1.70340 - a - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.31486 2.12647 2.41211 0.36768 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.38910 2.82844 0.25233 2.62837 - G - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.28818 2.60848 2.42319 2.42940 - A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.01896 1.01168 2.12953 0.95527 - u - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //