INFERNAL1/a [1.1.5 | Sep 2023] NAME CRISPR-DR26 ACC RF01355 DESC CRISPR RNA direct repeat element STATES 79 NODES 24 CLEN 25 W 39 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 04:27:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/users/nawrocki/notebook/22_0831_rfam_twenty_fams/RF01355/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 4.000000 CKSUM 1503706791 NULL 0.000 0.000 0.000 0.000 GA 39.00 TC 39.40 NC 38.50 EFP7GF -5.6074 0.74446 ECMLC 0.51101 -10.01956 3.29287 1600000 1080425 0.001111 ECMGC 0.42589 -14.40825 2.51424 1600000 539593 0.000741 ECMLI 0.53297 -7.80611 4.19787 1600000 720616 0.001665 ECMGI 0.45175 -12.15091 3.49254 1600000 468981 0.000853 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 39 58 -7.615 -7.822 -0.033 -6.236 IL 1 1 2 1 4 1 1 44 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 1 39 58 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 4 2 3 5 3 0 0 38 57 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 1 38 57 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 7 5 3 8 3 0 0 37 56 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 1 37 56 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 10 8 3 11 3 0 0 36 55 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 1 36 54 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 13 11 3 14 3 0 0 35 54 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 1 35 53 -8.593 -0.013 -7.247 -3.231 1.864 -4.018 -2.379 D 16 14 3 17 3 0 0 34 53 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 1 33 52 -8.593 -0.013 -7.247 0.693 -1.203 -1.404 0.652 D 19 17 3 20 3 0 0 33 51 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 1 32 51 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 22 20 3 23 3 0 0 31 50 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 1 31 50 -8.593 -0.013 -7.247 -3.231 1.864 -4.018 -2.379 D 25 23 3 26 3 0 0 30 49 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 1 30 49 -8.950 -0.012 -7.267 -2.677 -2.478 -3.451 1.837 D 28 26 3 29 3 0 0 29 48 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 25 - G - - MR 30 29 3 32 3 1 1 29 48 -8.950 -0.012 -7.267 -1.006 -0.507 1.249 -1.244 D 31 29 3 32 3 0 0 28 46 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 24 - G - - MR 33 32 3 35 3 1 1 28 47 -8.950 -0.012 -7.267 -2.823 -4.195 1.895 -3.558 D 34 32 3 35 3 0 0 27 45 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 23 - U - - MR 36 35 3 38 3 1 1 27 46 -8.950 -0.012 -7.267 -0.943 -1.338 -0.355 1.203 D 37 35 3 38 3 0 0 26 44 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 22 - C - - MR 39 38 3 41 3 1 1 26 45 -8.950 -0.012 -7.267 -3.231 1.864 -4.018 -2.379 D 40 38 3 41 3 0 0 25 43 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 21 - U - - MR 42 41 3 44 3 1 1 25 44 -8.950 -0.012 -7.267 -2.677 -2.478 -3.451 1.837 D 43 41 3 44 3 0 0 24 42 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 20 - U - - MR 45 44 3 47 5 1 1 24 43 -7.656 -0.026 -7.471 -7.683 -8.575 -2.677 -2.478 -3.451 1.837 D 46 44 3 47 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 10 19 A U - - MP 48 47 3 52 6 2 2 23 42 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.003 -3.794 -4.847 3.771 -5.908 -7.143 -1.529 -4.807 -4.794 -0.246 -5.395 -1.126 -1.928 -6.065 -3.460 -3.682 ML 49 47 3 52 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 18 U A - - MP 54 53 6 58 6 2 2 21 40 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.885 -5.729 -5.521 -1.951 -4.171 -5.925 0.158 -4.961 -5.516 -1.872 -5.808 -3.591 3.777 -5.942 -1.807 -4.074 ML 55 53 6 58 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 17 C G - - MP 60 59 6 64 4 2 2 19 38 -7.615 -7.822 -0.033 -6.236 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 61 59 6 64 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 63 59 6 64 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 64 64 5 64 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 65 65 6 65 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - U - - - ML 66 65 6 68 3 1 1 16 34 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 67 65 6 68 3 0 0 16 34 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - U - - - ML 69 68 3 71 3 1 1 14 33 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 70 68 3 71 3 0 0 15 33 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - U - - - ML 72 71 3 74 3 1 1 13 31 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 73 71 3 74 3 0 0 13 32 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - U - - - ML 75 74 3 77 2 1 1 1 1 * 0.000 -2.677 -2.478 -3.451 1.837 D 76 74 3 77 2 0 0 0 0 * 0.000 IL 77 77 3 77 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 23 ] - - - - - - E 78 77 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CRISPR-DR26 ACC RF01355 DESC CRISPR RNA direct repeat element LENG 25 MAXL 92 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 04:27:06 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/users/nawrocki/notebook/22_0831_rfam_twenty_fams/RF01355/CM NSEQ 4 EFFN 3.277344 CKSUM 1503706791 STATS LOCAL MSV -7.1990 0.74446 STATS LOCAL VITERBI -7.1191 0.74446 STATS LOCAL FORWARD -2.8905 0.74446 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.78345 1.63202 1.72954 0.77861 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 3.10311 4.02987 0.09434 3.59946 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 2.99532 2.89546 3.52547 0.14472 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 2.99532 2.89546 3.52547 0.14472 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 2.99532 2.89546 3.52547 0.14472 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 3.33204 0.12520 3.89843 2.78568 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.93029 2.13753 2.27882 0.95396 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 0.10062 3.64312 3.32965 3.38895 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 3.33204 0.12520 3.89843 2.78568 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 2.99532 2.89546 3.52547 0.14472 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 0.20902 3.28782 2.20403 3.19588 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 3.46296 2.28185 3.26212 0.18843 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 3.62209 0.15713 3.44382 2.44485 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 2.99532 2.89546 3.52547 0.14472 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 2.99532 2.89546 3.52547 0.14472 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 2.99532 2.89546 3.52547 0.14472 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 2.99532 2.89546 3.52548 0.14472 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 2.72808 3.61328 0.13468 3.39043 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 0.21318 3.45896 2.11870 3.21040 18 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 3.43382 2.54805 3.10276 0.16892 19 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 2.99532 2.89546 3.52548 0.14472 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 2.99532 2.89546 3.52548 0.14472 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 3.33204 0.12520 3.89843 2.78568 22 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 1.92730 2.20760 1.63312 0.59934 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.10311 4.02987 0.09434 3.59946 24 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 1.95014 1.73596 0.58287 2.09378 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //