INFERNAL1/a [1.1.5 | Sep 2023] NAME CRISPR-DR13 ACC RF01326 DESC CRISPR RNA direct repeat element STATES 94 NODES 27 CLEN 30 W 44 ALPH RNA RF no CONS yes MAP yes DATE Mon Jul 8 16:50:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01326/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 4.000000 CKSUM 2667368116 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.30 NC 36.70 EFP7GF -7.7445 0.73344 ECMLC 0.48154 -9.99454 3.58191 1600000 828792 0.001448 ECMGC 0.44976 -13.99358 1.76577 1600000 478989 0.000835 ECMLI 0.49839 -7.81157 4.57355 1600000 575318 0.002086 ECMGI 0.47705 -11.55095 2.93710 1600000 401489 0.000996 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 44 63 -7.615 -7.822 -0.033 -6.236 IL 1 1 2 1 4 1 1 49 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 1 44 63 -8.593 -0.013 -7.247 0.852 -2.054 0.680 -1.505 D 4 2 3 5 3 0 0 43 62 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 1 43 62 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 7 5 3 8 3 0 0 42 61 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 1 42 61 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 10 8 3 11 3 0 0 41 60 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 1 41 60 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 13 11 3 14 3 0 0 40 59 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 1 40 59 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 16 14 3 17 3 0 0 39 58 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 1 39 58 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 19 17 3 20 3 0 0 38 57 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 1 38 56 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 22 20 3 23 3 0 0 37 56 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 1 37 55 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 25 23 3 26 3 0 0 36 55 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 1 35 54 -8.593 -0.013 -7.247 -0.115 1.175 -2.012 -0.808 D 28 26 3 29 3 0 0 35 53 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 1 34 53 -8.593 -0.013 -7.247 1.889 -3.622 -3.140 -3.290 D 31 29 3 32 3 0 0 33 52 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 1 33 52 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 34 32 3 35 3 0 0 32 51 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 1 32 51 -8.950 -0.012 -7.267 1.889 -3.622 -3.140 -3.290 D 37 35 3 38 3 0 0 31 50 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 30 - C - - MR 39 38 3 41 3 1 1 31 50 -8.950 -0.012 -7.267 -1.562 1.273 -2.456 0.088 D 40 38 3 41 3 0 0 30 48 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 29 - A - - MR 42 41 3 44 3 1 1 30 49 -8.950 -0.012 -7.267 1.889 -3.622 -3.140 -3.290 D 43 41 3 44 3 0 0 29 47 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 1 31 50 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 28 - A - - MR 45 44 3 47 3 1 1 29 48 -8.950 -0.012 -7.267 1.889 -3.622 -3.140 -3.290 D 46 44 3 47 3 0 0 28 46 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 27 - A - - MR 48 47 3 50 5 1 1 28 47 -7.656 -0.026 -7.471 -7.683 -8.575 1.889 -3.622 -3.140 -3.290 D 49 47 3 50 5 0 0 27 45 -5.352 -0.707 -2.978 -4.409 -2.404 IR 50 50 3 50 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 26 C G - - MP 51 50 3 55 6 2 2 27 46 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 52 50 3 55 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 3 55 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 3 55 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 25 C G - - MP 57 56 6 61 6 2 2 25 44 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -5.950 -5.973 -5.383 -2.142 -3.866 -5.609 3.825 -4.822 -5.519 -2.037 -5.588 -3.985 -0.541 -5.921 -1.647 -4.326 ML 58 56 6 61 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 24 G U - - MP 63 62 6 67 6 2 2 23 42 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 -4.407 -3.061 -4.599 0.534 -5.865 -6.796 -1.392 -4.573 -4.155 0.320 -4.741 3.587 -1.695 -5.672 -3.312 -3.208 ML 64 62 6 67 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 23 u a - - MP 69 68 6 73 6 2 2 21 40 -9.400 -9.339 -0.017 -8.115 -8.395 -8.790 0.978 -3.224 -3.286 0.161 -2.738 -4.045 1.303 -3.272 -3.308 0.229 -3.801 -1.405 2.858 -3.503 -0.588 -2.339 ML 70 68 6 73 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 22 U A - - MP 75 74 6 79 4 2 2 19 38 -7.615 -7.822 -0.033 -6.236 -5.885 -5.729 -5.521 -1.951 -4.171 -5.925 0.158 -4.961 -5.516 -1.872 -5.808 -3.591 3.777 -5.942 -1.807 -4.074 ML 76 74 6 79 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 78 74 6 79 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 79 79 5 79 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 80 80 6 80 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 81 80 6 83 3 1 1 16 34 -8.593 -0.013 -7.247 -2.677 -2.478 -3.451 1.837 D 82 80 6 83 3 0 0 16 34 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - C - - - ML 84 83 3 86 3 1 1 14 33 -8.593 -0.013 -7.247 -3.231 1.864 -4.018 -2.379 D 85 83 3 86 3 0 0 15 33 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - G - - - ML 87 86 3 89 3 1 1 13 31 -8.593 -0.013 -7.247 -2.823 -4.195 1.895 -3.558 D 88 86 3 89 3 0 0 13 32 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 90 89 3 92 2 1 1 1 1 * 0.000 -2.823 -4.195 1.895 -3.558 D 91 89 3 92 2 0 0 0 0 * 0.000 IL 92 92 3 92 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 93 92 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CRISPR-DR13 ACC RF01326 DESC CRISPR RNA direct repeat element LENG 30 MAXL 99 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jul 8 16:50:39 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01326/CM NSEQ 4 EFFN 3.667969 CKSUM 2667368116 STATS LOCAL MSV -6.7456 0.73344 STATS LOCAL VITERBI -7.3218 0.73344 STATS LOCAL FORWARD -3.1027 0.73344 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.00136 1.78400 1.47203 1.44733 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 0.00000 * 1 0.80779 2.73882 0.93029 2.35316 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 2 3.13381 3.01207 3.66741 0.12588 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 3.13381 3.01207 3.66741 0.12588 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 0.08661 3.78563 3.46031 3.54557 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 0.08661 3.78563 3.46031 3.54557 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 0.08661 3.78563 3.46031 3.54557 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 0.08661 3.78563 3.46031 3.54557 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 3.13381 3.01207 3.66741 0.12588 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 1.45493 0.59765 2.71179 1.89671 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 0.08661 3.78563 3.46031 3.54557 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 3.23921 4.17997 0.08137 3.74423 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 0.08661 3.78563 3.46031 3.54557 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 3.78204 0.13445 3.61805 2.57452 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 3.78078 0.13452 3.61737 2.57428 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 2.19071 3.42765 0.20222 3.24982 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 1.58312 1.69525 2.12262 0.71050 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.64766 2.43477 3.46730 0.15650 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 3.13381 3.01207 3.66741 0.12588 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 19 3.49871 0.10668 4.05478 2.92603 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.23921 4.17997 0.08137 3.74423 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 3.23921 4.17997 0.08137 3.74423 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 0.17762 3.66154 2.27010 3.38900 22 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 0.58444 2.30642 1.52105 2.08358 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.45212 2.34694 3.21662 0.18324 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 25 2.86093 3.78945 0.11472 3.55576 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.86515 3.79626 0.11403 3.56337 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 0.08661 3.78563 3.46031 3.54557 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 0.08661 3.78563 3.46031 3.54557 28 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 0.08661 3.78563 3.46031 3.54557 29 A - - : 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 2.40019 0.52445 3.01199 1.31592 30 C - - : 1.38629 1.38629 1.38629 1.38629 0.01653 4.11087 * 1.46634 0.26236 0.00000 * //