INFERNAL1/a [1.1.5 | Sep 2023] NAME CRISPR-DR6 ACC RF01319 DESC CRISPR RNA direct repeat element STATES 94 NODES 28 CLEN 30 W 44 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 05:02:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01319/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 7.000000 CKSUM 1959822085 NULL 0.000 0.000 0.000 0.000 GA 39.00 TC 39.40 NC 38.90 EFP7GF -11.0089 0.72657 ECMLC 0.63473 -5.94087 4.11067 1600000 707897 0.001695 ECMGC 0.41734 -17.38651 0.08381 1600000 586903 0.000682 ECMLI 0.64843 -4.79057 4.65496 1600000 548447 0.002188 ECMGI 0.41862 -16.15543 1.08235 1600000 544448 0.000735 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 44 63 -8.235 -8.442 -0.022 -6.856 IL 1 1 2 1 4 1 1 48 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 2 44 63 -9.189 -0.009 -7.843 -3.742 -5.207 1.946 -4.480 D 4 2 3 5 3 0 0 43 62 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 1 43 61 -9.189 -0.009 -7.843 -3.688 -3.360 -4.479 1.918 D 7 5 3 8 3 0 0 42 61 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 1 42 60 -9.189 -0.009 -7.843 -3.688 -3.360 -4.479 1.918 D 10 8 3 11 3 0 0 41 60 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 1 40 59 -9.524 -0.008 -7.842 -0.456 1.109 -0.768 -0.924 D 13 11 3 14 3 0 0 39 58 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 30 - G - - MR 15 14 3 17 3 1 1 39 58 -9.524 -0.008 -7.842 -2.015 -1.264 1.659 -2.495 D 16 14 3 17 3 0 0 38 57 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 29 - A - - MR 18 17 3 20 3 1 1 38 57 -9.524 -0.008 -7.842 1.946 -4.655 -4.116 -4.373 D 19 17 3 20 3 0 0 37 56 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 28 - A - - MR 21 20 3 23 3 1 1 37 56 -9.524 -0.008 -7.842 1.946 -4.655 -4.116 -4.373 D 22 20 3 23 3 0 0 36 55 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 27 - A - - MR 24 23 3 26 5 1 1 36 55 -8.209 -0.018 -8.024 -8.237 -9.128 1.946 -4.655 -4.116 -4.373 D 25 23 3 26 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 26 C G - - MP 27 26 3 31 6 2 2 35 54 -9.739 -9.679 -0.014 -8.455 -8.735 -9.130 -7.169 -7.295 -6.347 -3.505 -4.728 -6.418 3.924 -5.874 -6.655 -3.464 -6.446 -5.448 -1.657 -7.077 -2.679 -5.457 ML 28 26 3 31 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 25 A U - - MP 33 32 6 37 6 2 2 33 52 -9.739 -9.679 -0.014 -8.455 -8.735 -9.130 -6.054 -4.774 -5.505 3.900 -7.358 -8.681 -2.973 -5.421 -5.809 -1.389 -6.434 -2.046 -3.307 -7.368 -4.874 -4.528 ML 34 32 6 37 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 24 A U - - MP 39 38 6 43 6 2 2 31 50 -9.739 -9.679 -0.014 -8.455 -8.735 -9.130 -6.054 -4.774 -5.505 3.900 -7.358 -8.681 -2.973 -5.421 -5.809 -1.389 -6.434 -2.046 -3.307 -7.368 -4.874 -4.528 ML 40 38 6 43 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 23 U A - - MP 45 44 6 49 4 2 2 29 48 -8.235 -8.442 -0.022 -6.856 -7.496 -7.368 -6.982 -3.626 -5.484 -7.271 -1.203 -6.329 -6.946 -3.654 -7.220 -5.277 3.921 -7.414 -3.036 -4.933 ML 46 44 6 49 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 32 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - A - - - ML 51 50 6 53 3 1 1 27 46 -9.189 -0.009 -7.843 1.946 -4.655 -4.116 -4.373 D 52 50 6 53 3 0 0 26 45 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - A - - - ML 54 53 3 56 3 1 1 26 45 -9.189 -0.009 -7.843 1.946 -4.655 -4.116 -4.373 D 55 53 3 56 3 0 0 25 44 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 57 56 3 59 3 1 1 25 43 -9.189 -0.009 -7.843 -3.742 -5.207 1.946 -4.480 D 58 56 3 59 3 0 0 24 43 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 60 59 3 62 3 1 1 24 42 -9.189 -0.009 -7.843 1.946 -4.655 -4.116 -4.373 D 61 59 3 62 3 0 0 23 42 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - C - - - ML 63 62 3 65 3 1 1 22 41 -9.189 -0.009 -7.843 -4.298 1.933 -4.936 -3.370 D 64 62 3 65 3 0 0 22 41 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - U - - - ML 66 65 3 68 3 1 1 21 40 -9.189 -0.009 -7.843 -3.688 -3.360 -4.479 1.918 D 67 65 3 68 3 0 0 21 40 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - A - - - ML 69 68 3 71 3 1 1 20 39 -9.189 -0.009 -7.843 1.621 -0.931 -2.553 -2.128 D 70 68 3 71 3 0 0 20 39 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - a - - - ML 72 71 3 74 3 1 1 19 38 -9.189 -0.009 -7.843 0.853 -0.537 -1.593 0.230 D 73 71 3 74 3 0 0 19 37 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - - - ML 75 74 3 77 3 1 1 18 36 -9.189 -0.009 -7.843 1.946 -4.655 -4.116 -4.373 D 76 74 3 77 3 0 0 18 36 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - A - - - ML 78 77 3 80 3 1 1 17 35 -9.189 -0.009 -7.843 1.946 -4.655 -4.116 -4.373 D 79 77 3 80 3 0 0 17 35 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - u - - - ML 81 80 3 83 3 1 1 15 34 -9.189 -0.009 -7.843 -0.212 -1.412 -0.030 0.833 D 82 80 3 83 3 0 0 16 34 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 84 83 3 86 3 1 1 14 32 -9.189 -0.009 -7.843 1.946 -4.655 -4.116 -4.373 D 85 83 3 86 3 0 0 15 33 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - G - - - ML 87 86 3 89 3 1 1 12 31 -9.189 -0.009 -7.843 -3.742 -5.207 1.946 -4.480 D 88 86 3 89 3 0 0 13 32 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - - - ML 90 89 3 92 2 1 1 1 1 * 0.000 1.946 -4.655 -4.116 -4.373 D 91 89 3 92 2 0 0 0 0 * 0.000 IL 92 92 3 92 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 27 ] - - - - - - E 93 92 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME CRISPR-DR6 ACC RF01319 DESC CRISPR RNA direct repeat element LENG 30 MAXL 95 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 05:02:12 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01319/CM NSEQ 7 EFFN 6.183105 CKSUM 1959822085 STATS LOCAL MSV -6.2769 0.72657 STATS LOCAL VITERBI -6.9191 0.72657 STATS LOCAL FORWARD -3.2603 0.72657 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.76820 2.15202 1.67120 1.46152 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 0.00000 * 1 3.84497 4.84480 0.04297 4.35809 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 2 3.78891 3.57809 4.33462 0.06577 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 3 3.78891 3.57809 4.33462 0.06577 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 4 1.67339 0.64805 1.91074 1.95647 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 5 4.55131 0.06298 4.45434 3.24791 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 6 0.08117 4.32376 3.01162 4.16696 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 7 0.08140 4.31895 3.01038 4.16116 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 8 4.57282 3.26563 4.48773 0.06161 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 9 0.04344 4.45551 4.08866 4.25894 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 10 0.04344 4.45551 4.08866 4.25894 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 11 3.84497 4.84480 0.04297 4.35809 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 12 0.04344 4.45551 4.08866 4.25894 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 13 4.21617 0.05341 4.68336 3.57521 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 14 3.78891 3.57809 4.33462 0.06577 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 15 0.27889 2.03126 3.04346 2.74050 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 16 0.81055 1.74947 2.43362 1.22485 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 17 0.04344 4.45551 4.08866 4.25894 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 18 0.04344 4.45551 4.08866 4.25894 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 19 1.51592 2.30779 1.41867 0.82353 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 20 0.04344 4.45551 4.08866 4.25894 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 21 3.84497 4.84480 0.04297 4.35809 21 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 22 0.04344 4.45551 4.08866 4.25894 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 23 0.07065 4.69038 3.09155 4.29818 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 24 4.37874 3.42156 4.12907 0.06326 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 25 4.39517 3.42477 4.13741 0.06279 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 26 3.54077 4.63187 0.05281 4.36526 26 G - - > 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 27 0.04344 4.45551 4.08866 4.25894 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 28 0.04344 4.45551 4.08866 4.25894 28 A - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 29 0.04344 4.45551 4.08866 4.25894 29 A - - : 1.38629 1.38629 1.38629 1.38629 0.02198 4.52179 4.52179 1.46634 0.26236 1.09861 0.40547 30 2.66782 2.26506 0.25305 2.98888 30 G - - : 1.38629 1.38629 1.38629 1.38629 0.01105 4.51086 * 1.46634 0.26236 0.00000 * //