INFERNAL1/a [1.1.4 | Dec 2020] NAME AHBV_epsilon ACC RF01313 DESC Avian HBV RNA encapsidation signal epsilon STATES 175 NODES 43 CLEN 57 W 72 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:12:33 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 2.231445 CKSUM 3424850640 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 46.50 NC 36.10 EFP7GF -10.8459 0.71932 ECMLC 0.67150 -4.99951 3.62953 1600000 394141 0.003045 ECMGC 0.45531 -15.17877 -2.03415 1600000 158956 0.002516 ECMLI 0.64045 -4.17371 4.59952 1600000 330670 0.003629 ECMGI 0.48215 -11.00808 0.61148 1600000 108432 0.003689 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 72 92 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 IL 1 1 2 1 6 1 11 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 12 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 57 U A - - MP 3 2 3 7 6 2 16 72 92 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.455 -4.286 -4.263 -0.562 -3.150 -4.803 1.183 -3.864 -4.266 -0.345 -4.626 -2.176 3.441 -4.595 -0.820 -3.062 ML 4 2 3 7 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 9 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 4 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 11 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 11 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 56 G U - - MP 9 8 6 13 6 2 15 70 90 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.760 -2.487 -3.938 1.041 -4.771 -5.501 -0.350 -3.943 -3.564 1.162 -4.094 3.220 -0.704 -4.673 -2.292 -2.610 ML 10 8 6 13 6 1 9 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 9 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 11 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 55 C G - - MP 15 14 6 19 6 2 14 68 88 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 16 14 6 19 6 1 8 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 8 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 3 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 10 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 10 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 54 C G - - MP 21 20 6 25 6 2 13 66 86 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 22 20 6 25 6 1 8 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 8 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 9 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 10 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 53 A U - - MP 27 26 6 31 6 2 11 64 84 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.995 -2.976 -3.997 3.449 -4.439 -5.522 -0.125 -4.025 -3.882 0.859 -4.439 -0.420 -0.541 -4.675 -2.065 -2.820 ML 28 26 6 31 6 1 6 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 7 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 9 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 9 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 52 A U - - MP 33 32 6 37 4 2 10 62 82 -6.974 -8.219 -0.075 -4.673 -3.995 -2.976 -3.997 3.449 -4.439 -5.522 -0.125 -4.025 -3.882 0.859 -4.439 -0.420 -0.541 -4.675 -2.065 -2.820 ML 34 32 6 37 4 1 5 62 81 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 6 61 81 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 2 60 79 -12.737 -14.007 -2.036 -0.404 IL 37 37 5 37 4 1 6 62 81 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 8 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 51 - U - - MR 39 38 6 41 5 1 9 60 80 -7.190 -0.036 -7.006 -7.218 -8.110 -1.693 -1.653 -2.436 1.673 D 40 38 6 41 5 0 2 59 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 6 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 50 G C - - MP 42 41 3 46 6 2 10 59 79 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.962 -3.200 -5.085 0.052 -5.542 -4.779 -0.852 -5.341 -4.469 3.687 -4.790 -0.908 -1.231 -4.611 -2.901 -3.958 ML 43 41 3 46 6 1 4 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 4 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 5 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 6 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 49 G C - - MP 48 47 6 52 6 2 9 57 77 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.962 -3.200 -5.085 0.052 -5.542 -4.779 -0.852 -5.341 -4.469 3.687 -4.790 -0.908 -1.231 -4.611 -2.901 -3.958 ML 49 47 6 52 6 1 4 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 3 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 5 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 5 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 48 U A - - MP 54 53 6 58 6 2 8 55 75 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.455 -4.286 -4.263 -0.562 -3.150 -4.803 1.183 -3.864 -4.266 -0.345 -4.626 -2.176 3.441 -4.595 -0.820 -3.062 ML 55 53 6 58 6 1 3 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 47 A U - - MP 60 59 6 64 6 2 7 53 73 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.995 -2.976 -3.997 3.449 -4.439 -5.522 -0.125 -4.025 -3.882 0.859 -4.439 -0.420 -0.541 -4.675 -2.065 -2.820 ML 61 59 6 64 6 1 2 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 4 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 46 U G - - MP 66 65 6 70 4 2 5 51 71 -7.067 -7.274 -0.049 -5.688 -4.322 -4.252 -3.971 -0.564 -2.660 -4.358 1.632 -3.453 -4.014 -0.411 -4.282 -2.246 0.752 -4.385 3.140 -2.874 ML 67 65 6 70 4 1 2 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 3 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 3 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - C - - - ML 72 71 6 74 3 1 4 49 68 -8.075 -0.019 -6.729 -0.636 1.284 -1.841 -0.637 D 73 71 6 74 3 0 0 48 67 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 75 74 3 77 3 1 3 48 67 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 76 74 3 77 3 0 0 47 66 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - U - - - ML 78 77 3 80 3 1 3 47 66 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 79 77 3 80 3 0 0 46 65 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - U - - - ML 81 80 3 83 3 1 3 46 65 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 82 80 3 83 3 0 0 45 64 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 84 83 3 86 3 1 2 45 64 -8.075 -0.019 -6.729 1.763 -2.596 -2.205 -2.161 D 85 83 3 86 3 0 0 43 63 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - C - - - ML 87 86 3 89 3 1 1 44 63 -8.458 -0.017 -6.776 -2.012 1.690 -2.842 -1.371 D 88 86 3 89 3 0 0 42 62 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 45 - U - - MR 90 89 3 92 5 1 1 43 62 -7.190 -0.036 -7.006 -7.218 -8.110 -1.693 -1.653 -2.436 1.673 D 91 89 3 92 5 0 0 41 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 44 G C - - MP 93 92 3 97 6 2 2 42 61 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.962 -3.200 -5.085 0.052 -5.542 -4.779 -0.852 -5.341 -4.469 3.687 -4.790 -0.908 -1.231 -4.611 -2.901 -3.958 ML 94 92 3 97 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 43 U A - - MP 99 98 6 103 6 2 2 40 59 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.455 -4.286 -4.263 -0.562 -3.150 -4.803 1.183 -3.864 -4.266 -0.345 -4.626 -2.176 3.441 -4.595 -0.820 -3.062 ML 100 98 6 103 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 42 C G - - MP 105 104 6 109 4 2 2 38 57 -7.067 -7.274 -0.049 -5.688 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 106 104 6 109 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 111 110 6 113 3 1 1 35 54 -8.075 -0.019 -6.729 -0.289 -0.898 -0.836 1.060 D 112 110 6 113 3 0 0 34 53 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - A - - - ML 114 113 3 116 3 1 1 34 53 -8.075 -0.019 -6.729 1.763 -2.596 -2.205 -2.161 D 115 113 3 116 3 0 0 33 52 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - C - - - ML 117 116 3 119 3 1 1 33 52 -8.075 -0.019 -6.729 -2.012 1.690 -2.842 -1.371 D 118 116 3 119 3 0 0 32 51 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - - - ML 120 119 3 122 3 1 1 32 51 -8.075 -0.019 -6.729 1.175 -0.509 -1.258 -0.686 D 121 119 3 122 3 0 0 31 50 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - U - - - ML 123 122 3 125 3 1 1 31 49 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 124 122 3 125 3 0 0 30 49 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - U - - - ML 126 125 3 128 3 1 1 30 48 -8.458 -0.017 -6.776 -0.926 -0.231 -1.679 1.208 D 127 125 3 128 3 0 0 28 47 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 41 - U - - MR 129 128 3 131 3 1 1 29 47 -8.458 -0.017 -6.776 -1.693 -1.653 -2.436 1.673 D 130 128 3 131 3 0 0 27 46 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 40 - u - - MR 132 131 3 134 3 1 1 28 46 -8.458 -0.017 -6.776 -0.318 -0.587 0.291 0.388 D 133 131 3 134 3 0 0 26 45 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 39 - U - - MR 135 134 3 137 3 1 1 27 45 -8.458 -0.017 -6.776 -1.693 -1.653 -2.436 1.673 D 136 134 3 137 3 0 0 25 44 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 38 - g - - MR 138 137 3 140 3 1 1 26 44 -8.458 -0.017 -6.776 -0.319 -0.442 0.474 0.102 D 139 137 3 140 3 0 0 24 43 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 37 - u - - MR 141 140 3 143 3 1 1 25 43 -8.458 -0.017 -6.776 -0.093 -0.229 -0.476 0.575 D 142 140 3 143 3 0 0 23 42 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 36 - g - - MR 144 143 3 146 3 1 1 24 42 -8.458 -0.017 -6.776 -0.108 -0.536 0.753 -0.521 D 145 143 3 146 3 0 0 22 41 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 35 - C - - MR 147 146 3 149 5 1 1 23 41 -7.190 -0.036 -7.006 -7.218 -8.110 -1.018 1.108 -1.845 0.100 D 148 146 3 149 5 0 0 21 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 34 G U - - MP 150 149 3 154 6 2 2 22 40 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.760 -2.487 -3.938 1.041 -4.771 -5.501 -0.350 -3.943 -3.564 1.162 -4.094 3.220 -0.704 -4.673 -2.292 -2.610 ML 151 149 3 154 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 33 C G - - MP 156 155 6 160 4 2 2 19 38 -7.067 -7.274 -0.049 -5.688 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 157 155 6 160 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 29 - U - - - ML 162 161 6 164 3 1 1 16 35 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 163 161 6 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - G - - - ML 165 164 3 167 3 1 1 15 33 -8.075 -0.019 -6.729 -1.816 -3.071 1.772 -2.459 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 31 - U - - - ML 168 167 3 170 3 1 1 13 31 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 32 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.693 -1.653 -2.436 1.673 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME AHBV_epsilon ACC RF01313 DESC Avian HBV RNA encapsidation signal epsilon LENG 57 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:12:33 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 2.885742 CKSUM 3424850640 STATS LOCAL MSV -8.2408 0.71932 STATS LOCAL VITERBI -8.3550 0.71932 STATS LOCAL FORWARD -3.8012 0.71932 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65819 1.50536 1.46744 1.02984 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 0.00000 * 1 3.30260 2.12712 3.06113 0.22665 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 2 2.04091 3.15754 0.25067 3.01026 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 3 3.47005 0.18441 3.26536 2.31157 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 4 3.46251 0.18503 3.26154 2.31020 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 5 0.25302 3.08377 2.05491 3.00264 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 6 0.25323 3.08260 2.05465 3.00103 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 7 2.73114 3.46844 0.13892 3.39955 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 8 2.73769 3.47696 0.13768 3.41114 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 9 3.25199 2.12308 3.03686 0.23111 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 10 0.25387 3.07912 2.05387 2.99626 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 11 3.15376 1.70099 2.97683 0.32317 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 12 1.95012 0.40881 2.88171 1.98584 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 13 2.84355 2.76838 3.36932 0.16889 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 14 2.84355 2.76838 3.36932 0.16889 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 15 2.84355 2.76838 3.36932 0.16889 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 16 0.11891 3.48564 3.18623 3.21520 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 17 3.14428 0.15015 3.71777 2.63059 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 18 2.74691 3.48900 0.13596 3.42759 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 19 3.26361 2.12402 3.04249 0.23006 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 20 3.45460 0.18569 3.25752 2.30876 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 21 1.64051 2.10148 2.00804 0.59858 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 22 0.11891 3.48564 3.18623 3.21520 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 23 3.14428 0.15015 3.71777 2.63059 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 24 0.51518 1.74714 2.38705 1.99192 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 25 2.84355 2.76838 3.36932 0.16889 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 26 2.18118 1.55727 2.71065 0.49448 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 27 2.03590 3.14576 0.25310 2.99544 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 28 3.45295 0.18583 3.25668 2.30846 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 29 2.84355 2.76838 3.36932 0.16889 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 30 2.94912 3.85866 0.11183 3.43200 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 31 2.84355 2.76838 3.36932 0.16889 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 32 2.84355 2.76838 3.36932 0.16889 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 33 2.59214 3.42925 0.15921 3.22099 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 34 3.21460 2.11254 2.94582 0.24037 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 35 2.26227 0.54445 2.85510 1.35412 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 36 1.51925 1.76926 0.78950 1.85410 36 g - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 37 1.47406 1.54080 1.71415 0.97636 37 u - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 38 1.67863 1.70220 0.99589 1.34058 38 g - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 39 2.84355 2.76838 3.36932 0.16889 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 40 1.67090 1.82121 1.13435 1.11334 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 41 2.84355 2.76838 3.36932 0.16889 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 42 2.59070 3.42712 0.15954 3.21852 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 43 0.26041 3.23512 1.96111 3.01175 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 44 3.63972 0.16080 3.33836 2.44433 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 45 2.84355 2.76838 3.36932 0.16889 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 46 2.26817 3.15836 0.22483 2.89400 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 47 3.22001 2.37700 2.88971 0.20872 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 48 0.26131 3.22918 1.96025 3.00496 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 49 3.61739 0.16235 3.32806 2.44019 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 50 3.62357 0.16192 3.33093 2.44134 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 51 2.84355 2.76838 3.36932 0.16889 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 52 3.22538 2.37780 2.89193 0.20821 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 53 3.22865 2.37829 2.89329 0.20790 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 54 2.59283 3.43028 0.15906 3.22218 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 55 2.59590 3.43484 0.15837 3.22747 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 56 3.22686 2.11355 2.95132 0.23922 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 57 0.25776 3.25291 1.96365 3.03212 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.01881 3.98278 * 1.46634 0.26236 0.00000 * //