INFERNAL1/a [1.1.5 | Sep 2023] NAME AHBV_epsilon ACC RF01313 DESC Avian HBV RNA encapsidation signal epsilon STATES 175 NODES 43 CLEN 57 W 72 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 21:09:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01313/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 2.231445 CKSUM 3424850640 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 45.30 NC 44.20 EFP7GF -10.8458 0.71932 ECMLC 0.67150 -4.99951 3.62953 1600000 394141 0.003045 ECMGC 0.45531 -15.17877 -2.03415 1600000 158956 0.002516 ECMLI 0.64045 -4.17371 4.59952 1600000 330670 0.003629 ECMGI 0.48215 -11.00808 0.61148 1600000 108432 0.003689 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 72 92 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 IL 1 1 2 1 6 1 11 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 12 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 57 U A - - MP 3 2 3 7 6 2 16 72 92 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.455 -4.286 -4.263 -0.562 -3.150 -4.803 1.183 -3.864 -4.266 -0.345 -4.626 -2.176 3.441 -4.595 -0.820 -3.062 ML 4 2 3 7 6 1 10 71 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 9 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 4 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 11 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 11 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 56 G U - - MP 9 8 6 13 6 2 15 70 90 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.760 -2.487 -3.938 1.041 -4.771 -5.501 -0.350 -3.943 -3.564 1.162 -4.094 3.220 -0.704 -4.673 -2.292 -2.610 ML 10 8 6 13 6 1 9 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 9 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 4 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 11 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 11 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 55 C G - - MP 15 14 6 19 6 2 14 68 88 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 16 14 6 19 6 1 8 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 8 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 3 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 10 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 10 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 54 C G - - MP 21 20 6 25 6 2 13 66 86 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 22 20 6 25 6 1 8 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 8 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 3 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 9 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 10 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 53 A U - - MP 27 26 6 31 6 2 11 64 84 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.995 -2.976 -3.997 3.449 -4.439 -5.522 -0.125 -4.025 -3.882 0.859 -4.439 -0.420 -0.541 -4.675 -2.065 -2.820 ML 28 26 6 31 6 1 6 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 7 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 3 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 9 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 9 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 52 A U - - MP 33 32 6 37 4 2 10 62 82 -6.974 -8.219 -0.075 -4.673 -3.995 -2.976 -3.997 3.449 -4.439 -5.522 -0.125 -4.025 -3.882 0.859 -4.439 -0.420 -0.541 -4.675 -2.065 -2.820 ML 34 32 6 37 4 1 5 62 81 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 6 61 81 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 2 60 79 -12.737 -14.007 -2.036 -0.404 IL 37 37 5 37 4 1 6 62 81 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 8 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 51 - U - - MR 39 38 6 41 5 1 9 60 80 -7.190 -0.036 -7.006 -7.218 -8.110 -1.693 -1.653 -2.436 1.673 D 40 38 6 41 5 0 2 59 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 41 41 3 41 5 1 6 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 50 G C - - MP 42 41 3 46 6 2 10 59 79 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.962 -3.200 -5.085 0.052 -5.542 -4.779 -0.852 -5.341 -4.469 3.687 -4.790 -0.908 -1.231 -4.611 -2.901 -3.958 ML 43 41 3 46 6 1 4 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 3 46 6 1 4 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 3 46 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 5 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 6 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 49 G C - - MP 48 47 6 52 6 2 9 57 77 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.962 -3.200 -5.085 0.052 -5.542 -4.779 -0.852 -5.341 -4.469 3.687 -4.790 -0.908 -1.231 -4.611 -2.901 -3.958 ML 49 47 6 52 6 1 4 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 3 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 0 54 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 5 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 5 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 9 48 U A - - MP 54 53 6 58 6 2 8 55 75 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.455 -4.286 -4.263 -0.562 -3.150 -4.803 1.183 -3.864 -4.266 -0.345 -4.626 -2.176 3.441 -4.595 -0.820 -3.062 ML 55 53 6 58 6 1 3 54 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 3 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 4 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 4 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 10 47 A U - - MP 60 59 6 64 6 2 7 53 73 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.995 -2.976 -3.997 3.449 -4.439 -5.522 -0.125 -4.025 -3.882 0.859 -4.439 -0.420 -0.541 -4.675 -2.065 -2.820 ML 61 59 6 64 6 1 2 53 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 2 52 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 4 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 3 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 11 46 U G - - MP 66 65 6 70 4 2 5 51 71 -7.067 -7.274 -0.049 -5.688 -4.322 -4.252 -3.971 -0.564 -2.660 -4.358 1.632 -3.453 -4.014 -0.411 -4.282 -2.246 0.752 -4.385 3.140 -2.874 ML 67 65 6 70 4 1 2 52 72 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 4 1 1 51 71 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 69 65 6 70 4 0 0 50 70 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 3 53 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 3 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - C - - - ML 72 71 6 74 3 1 4 49 68 -8.075 -0.019 -6.729 -0.636 1.284 -1.841 -0.637 D 73 71 6 74 3 0 0 48 67 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 2 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 75 74 3 77 3 1 3 48 67 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 76 74 3 77 3 0 0 47 66 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 2 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - U - - - ML 78 77 3 80 3 1 3 47 66 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 79 77 3 80 3 0 0 46 65 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - U - - - ML 81 80 3 83 3 1 3 46 65 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 82 80 3 83 3 0 0 45 64 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - A - - - ML 84 83 3 86 3 1 2 45 64 -8.075 -0.019 -6.729 1.763 -2.596 -2.205 -2.161 D 85 83 3 86 3 0 0 43 63 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - C - - - ML 87 86 3 89 3 1 1 44 63 -8.458 -0.017 -6.776 -2.012 1.690 -2.842 -1.371 D 88 86 3 89 3 0 0 42 62 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 45 - U - - MR 90 89 3 92 5 1 1 43 62 -7.190 -0.036 -7.006 -7.218 -8.110 -1.693 -1.653 -2.436 1.673 D 91 89 3 92 5 0 0 41 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 44 G C - - MP 93 92 3 97 6 2 2 42 61 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.962 -3.200 -5.085 0.052 -5.542 -4.779 -0.852 -5.341 -4.469 3.687 -4.790 -0.908 -1.231 -4.611 -2.901 -3.958 ML 94 92 3 97 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 43 U A - - MP 99 98 6 103 6 2 2 40 59 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -4.455 -4.286 -4.263 -0.562 -3.150 -4.803 1.183 -3.864 -4.266 -0.345 -4.626 -2.176 3.441 -4.595 -0.820 -3.062 ML 100 98 6 103 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 42 C G - - MP 105 104 6 109 4 2 2 38 57 -7.067 -7.274 -0.049 -5.688 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 106 104 6 109 4 1 1 38 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 40 59 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 111 110 6 113 3 1 1 35 54 -8.075 -0.019 -6.729 -0.289 -0.898 -0.836 1.060 D 112 110 6 113 3 0 0 34 53 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - A - - - ML 114 113 3 116 3 1 1 34 53 -8.075 -0.019 -6.729 1.763 -2.596 -2.205 -2.161 D 115 113 3 116 3 0 0 33 52 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - C - - - ML 117 116 3 119 3 1 1 33 52 -8.075 -0.019 -6.729 -2.012 1.690 -2.842 -1.371 D 118 116 3 119 3 0 0 32 51 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - A - - - ML 120 119 3 122 3 1 1 32 51 -8.075 -0.019 -6.729 1.175 -0.509 -1.258 -0.686 D 121 119 3 122 3 0 0 31 50 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - U - - - ML 123 122 3 125 3 1 1 31 49 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 124 122 3 125 3 0 0 30 49 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - U - - - ML 126 125 3 128 3 1 1 30 48 -8.458 -0.017 -6.776 -0.926 -0.231 -1.679 1.208 D 127 125 3 128 3 0 0 28 47 -5.620 -0.734 -1.403 IL 128 128 3 128 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 41 - U - - MR 129 128 3 131 3 1 1 29 47 -8.458 -0.017 -6.776 -1.693 -1.653 -2.436 1.673 D 130 128 3 131 3 0 0 27 46 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 29 48 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 40 - u - - MR 132 131 3 134 3 1 1 28 46 -8.458 -0.017 -6.776 -0.318 -0.587 0.291 0.388 D 133 131 3 134 3 0 0 26 45 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 28 47 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 39 - U - - MR 135 134 3 137 3 1 1 27 45 -8.458 -0.017 -6.776 -1.693 -1.653 -2.436 1.673 D 136 134 3 137 3 0 0 25 44 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 38 - g - - MR 138 137 3 140 3 1 1 26 44 -8.458 -0.017 -6.776 -0.319 -0.442 0.474 0.102 D 139 137 3 140 3 0 0 24 43 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 37 - u - - MR 141 140 3 143 3 1 1 25 43 -8.458 -0.017 -6.776 -0.093 -0.229 -0.476 0.575 D 142 140 3 143 3 0 0 23 42 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 36 - g - - MR 144 143 3 146 3 1 1 24 42 -8.458 -0.017 -6.776 -0.108 -0.536 0.753 -0.521 D 145 143 3 146 3 0 0 22 41 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 35 - C - - MR 147 146 3 149 5 1 1 23 41 -7.190 -0.036 -7.006 -7.218 -8.110 -1.018 1.108 -1.845 0.100 D 148 146 3 149 5 0 0 21 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 27 34 G U - - MP 150 149 3 154 6 2 2 22 40 -9.154 -9.093 -0.020 -7.870 -8.150 -8.545 -3.760 -2.487 -3.938 1.041 -4.771 -5.501 -0.350 -3.943 -3.564 1.162 -4.094 3.220 -0.704 -4.673 -2.292 -2.610 ML 151 149 3 154 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 28 33 C G - - MP 156 155 6 160 4 2 2 19 38 -7.067 -7.274 -0.049 -5.688 -4.794 -4.721 -4.442 -0.932 -3.108 -4.821 3.620 -3.943 -4.500 -0.724 -4.734 -2.672 0.380 -4.846 -0.821 -3.332 ML 157 155 6 160 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 29 - U - - - ML 162 161 6 164 3 1 1 16 35 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 163 161 6 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 30 - G - - - ML 165 164 3 167 3 1 1 15 33 -8.075 -0.019 -6.729 -1.816 -3.071 1.772 -2.459 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 31 - U - - - ML 168 167 3 170 3 1 1 13 31 -8.075 -0.019 -6.729 -1.693 -1.653 -2.436 1.673 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 32 - U - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.693 -1.653 -2.436 1.673 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME AHBV_epsilon ACC RF01313 DESC Avian HBV RNA encapsidation signal epsilon LENG 57 MAXL 138 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 21:09:14 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF01313/CM NSEQ 10 EFFN 2.885742 CKSUM 3424850640 STATS LOCAL MSV -8.2408 0.71932 STATS LOCAL VITERBI -8.3550 0.71932 STATS LOCAL FORWARD -3.8012 0.71932 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65819 1.50536 1.46744 1.02984 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 0.00000 * 1 3.30260 2.12712 3.06113 0.22665 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 2 2.04091 3.15754 0.25067 3.01026 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 3 3.47005 0.18441 3.26536 2.31157 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 4 3.46251 0.18503 3.26154 2.31020 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 5 0.25302 3.08377 2.05491 3.00264 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 6 0.25323 3.08260 2.05465 3.00103 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 7 2.73114 3.46844 0.13892 3.39955 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 8 2.73769 3.47696 0.13768 3.41114 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 9 3.25199 2.12308 3.03686 0.23111 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 10 0.25387 3.07912 2.05387 2.99626 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 11 3.15376 1.70099 2.97683 0.32317 11 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 12 1.95012 0.40881 2.88171 1.98584 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 13 2.84355 2.76838 3.36932 0.16889 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 14 2.84355 2.76838 3.36932 0.16889 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 15 2.84355 2.76838 3.36932 0.16889 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 16 0.11891 3.48564 3.18623 3.21520 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 17 3.14428 0.15015 3.71777 2.63059 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 18 2.74691 3.48900 0.13596 3.42759 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 19 3.26361 2.12402 3.04249 0.23006 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 20 3.45460 0.18569 3.25752 2.30876 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 21 1.64051 2.10148 2.00804 0.59858 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 22 0.11891 3.48564 3.18623 3.21520 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 23 3.14428 0.15015 3.71777 2.63059 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 24 0.51518 1.74714 2.38705 1.99192 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 25 2.84355 2.76838 3.36932 0.16889 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 26 2.18118 1.55727 2.71065 0.49448 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 27 2.03590 3.14576 0.25310 2.99544 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 28 3.45295 0.18583 3.25668 2.30846 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 29 2.84355 2.76838 3.36932 0.16889 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 30 2.94912 3.85866 0.11183 3.43200 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 31 2.84355 2.76838 3.36932 0.16889 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 32 2.84355 2.76838 3.36932 0.16889 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 33 2.59214 3.42925 0.15921 3.22099 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 34 3.21460 2.11254 2.94582 0.24037 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 35 2.26227 0.54445 2.85510 1.35412 35 C - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 36 1.51925 1.76926 0.78950 1.85410 36 g - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 37 1.47406 1.54080 1.71415 0.97636 37 u - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 38 1.67863 1.70220 0.99589 1.34058 38 g - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 39 2.84355 2.76838 3.36932 0.16889 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 40 1.67090 1.82121 1.13435 1.11334 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 41 2.84355 2.76838 3.36932 0.16889 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 42 2.59070 3.42712 0.15954 3.21852 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 43 0.26041 3.23512 1.96111 3.01175 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 44 3.63972 0.16080 3.33836 2.44433 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 45 2.84355 2.76838 3.36932 0.16889 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 46 2.26817 3.15836 0.22483 2.89400 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 47 3.22001 2.37700 2.88971 0.20872 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 48 0.26131 3.22918 1.96025 3.00496 48 A - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 49 3.61739 0.16235 3.32806 2.44019 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 50 3.62357 0.16192 3.33093 2.44134 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 51 2.84355 2.76838 3.36932 0.16889 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 52 3.22538 2.37780 2.89193 0.20821 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 53 3.22865 2.37829 2.89329 0.20790 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 54 2.59283 3.43028 0.15906 3.22218 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 55 2.59590 3.43484 0.15837 3.22747 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 56 3.22686 2.11355 2.95132 0.23922 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 57 0.25776 3.25291 1.96365 3.03212 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.01881 3.98278 * 1.46634 0.26236 0.00000 * //